RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 KRTAP13-3Q3SY46 172 aa3.04□□□□□ -1.92
EPHA4-202ENST00000409854 SPATA8Q6RVD6 105 aa3.03□□□□□ -1.92
EPHA4-202ENST00000409854 ABCA13Q86UQ4 5058 aa3.03□□□□□ -1.92
EPHA4-202ENST00000409854 SPINK7P58062 85 aa3.02□□□□□ -1.93
EPHA4-202ENST00000409854 Q5W150 140 aa3.02□□□□□ -1.93
EPHA4-202ENST00000409854 CSAG1Q6PB30 78 aa3.02□□□□□ -1.93
EPHA4-202ENST00000409854 C20orf166-AS1Q96NR2 134 aa3.02□□□□□ -1.93
EPHA4-202ENST00000409854 A8MUU9 505 aa3.01□□□□□ -1.93
EPHA4-202ENST00000409854 MIR22HGQ0VDD5 57 aa3.01□□□□□ -1.93
EPHA4-202ENST00000409854 C9orf92A6NGG3 77 aa3□□□□□ -1.93
EPHA4-202ENST00000409854 UQCR11O14957 56 aa2.99□□□□□ -1.93
EPHA4-202ENST00000409854 ADM2Q7Z4H4 148 aa2.99□□□□□ -1.93
EPHA4-202ENST00000409854 K7ERS5 55 aa2.99□□□□□ -1.93
EPHA4-202ENST00000409854 DMBT1Q9UGM3 2413 aaPredicted RBP2.98□□□□□ -1.93
EPHA4-202ENST00000409854 KRTAP25-1Q3LHN0 102 aa2.98□□□□□ -1.93
EPHA4-202ENST00000409854 DMAC1Q96GE9 116 aa2.97□□□□□ -1.93
EPHA4-202ENST00000409854 TPRXLQ17RH7 258 aa2.97□□□□□ -1.93
EPHA4-202ENST00000409854 IGKV2-30P06310 120 aa2.96□□□□□ -1.93
EPHA4-202ENST00000409854 XP32Q5T750 250 aa2.96□□□□□ -1.93
EPHA4-202ENST00000409854 RPL37P61927 97 aaKnown RBP2.95□□□□□ -1.94
EPHA4-202ENST00000409854 IGKV2D-30A0A075B6S6 120 aa2.93□□□□□ -1.94
EPHA4-202ENST00000409854 PCLOQ9Y6V0 5065 aa2.93□□□□□ -1.94
EPHA4-202ENST00000409854 P0C880 135 aa2.91□□□□□ -1.94
EPHA4-202ENST00000409854 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
EPHA4-202ENST00000409854 HRES1P13985 223 aa2.91□□□□□ -1.94
EPHA4-202ENST00000409854 A0A1B0GU69 56 aa2.9□□□□□ -1.95
EPHA4-202ENST00000409854 ACYP2P14621 99 aa2.88□□□□□ -1.95
EPHA4-202ENST00000409854 LPAP08519 4548 aa2.88□□□□□ -1.95
EPHA4-202ENST00000409854 LRP2P98164 4655 aa2.87□□□□□ -1.95
EPHA4-202ENST00000409854 CAMK2N1Q7Z7J9 78 aa2.86□□□□□ -1.95
EPHA4-202ENST00000409854 MUC17Q685J3 4493 aa2.84□□□□□ -1.95
EPHA4-202ENST00000409854 KRTAP3-1Q9BYR8 98 aa2.84□□□□□ -1.96
EPHA4-202ENST00000409854 COX6B2Q6YFQ2 88 aa2.83□□□□□ -1.96
EPHA4-202ENST00000409854 HMCN2Q8NDA2 5059 aa2.83□□□□□ -1.96
EPHA4-202ENST00000409854 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
EPHA4-202ENST00000409854 HERC1Q15751 4861 aa2.81□□□□□ -1.96
EPHA4-202ENST00000409854 KRTAP15-1Q3LI76 137 aa2.81□□□□□ -1.96
EPHA4-202ENST00000409854 KRTAP4-1Q9BYQ7 146 aa2.8□□□□□ -1.96
EPHA4-202ENST00000409854 SPINT4Q6UDR6 99 aa2.78□□□□□ -1.96
EPHA4-202ENST00000409854 KRTAP19-2Q3LHN2 52 aa2.76□□□□□ -1.97
EPHA4-202ENST00000409854 H1FX-AS1Q4G0G2 97 aa2.76□□□□□ -1.97
EPHA4-202ENST00000409854 S4R3F8 94 aa2.74□□□□□ -1.97
EPHA4-202ENST00000409854 A0A1B0GU33 70 aa2.68□□□□□ -1.98
EPHA4-202ENST00000409854 RNF213Q63HN8 5207 aa2.67□□□□□ -1.98
EPHA4-202ENST00000409854 A0A0D9SG42 100 aa2.67□□□□□ -1.98
EPHA4-202ENST00000409854 MUC2Q02817 5179 aa2.66□□□□□ -1.98
EPHA4-202ENST00000409854 UBR4Q5T4S7 5183 aa2.66□□□□□ -1.98
EPHA4-202ENST00000409854 CRIPTQ9P021 101 aa2.66□□□□□ -1.98
EPHA4-202ENST00000409854 FLGP20930 4061 aaPredicted RBP2.66□□□□□ -1.98
EPHA4-202ENST00000409854 H0YAA0 97 aa2.65□□□□□ -1.99
EPHA4-202ENST00000409854 KRTAP10-6P60371 365 aaPredicted RBP2.64□□□□□ -1.99
EPHA4-202ENST00000409854 MT1HP80294 61 aa2.61□□□□□ -1.99
EPHA4-202ENST00000409854 KRTAP23-1A1A580 65 aa2.6□□□□□ -1.99
EPHA4-202ENST00000409854 PRO2289Q9P1D8 64 aa2.59□□□□□ -1.99
EPHA4-202ENST00000409854 FAT4Q6V0I7 4981 aa2.57□□□□□ -2
EPHA4-202ENST00000409854 KRTAP13-4Q3LI77 160 aa2.56□□□□□ -2
EPHA4-202ENST00000409854 PLAC4Q8WY50 150 aa2.55□□□□□ -2
EPHA4-202ENST00000409854 M0QZ58 72 aa2.54□□□□□ -2
EPHA4-202ENST00000409854 M0R2T5 61 aa2.53□□□□□ -2
EPHA4-202ENST00000409854 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
EPHA4-202ENST00000409854 MT2AP02795 61 aa2.51□□□□□ -2.01
EPHA4-202ENST00000409854 R4GN34 69 aa2.5□□□□□ -2.01
EPHA4-202ENST00000409854 INE1O15225 51 aa2.49□□□□□ -2.01
EPHA4-202ENST00000409854 MT1FP04733 61 aa2.49□□□□□ -2.01
EPHA4-202ENST00000409854 SPRR2GQ9BYE4 73 aa2.47□□□□□ -2.01
EPHA4-202ENST00000409854 KRTAP12-1P59990 96 aa2.47□□□□□ -2.01
EPHA4-202ENST00000409854 C10orf95Q9H7T3 257 aa2.47□□□□□ -2.01
EPHA4-202ENST00000409854 KRTAP19-1Q8IUB9 90 aa2.46□□□□□ -2.02
EPHA4-202ENST00000409854 KRTAP10-10P60014 251 aa2.45□□□□□ -2.02
EPHA4-202ENST00000409854 KRTAP12-2P59991 146 aa2.45□□□□□ -2.02
EPHA4-202ENST00000409854 KRTAP9-3Q9BYQ3 159 aa2.43□□□□□ -2.02
EPHA4-202ENST00000409854 KRTAP19-8Q3LI54 63 aa2.41□□□□□ -2.02
EPHA4-202ENST00000409854 PP632Q6XCG6 107 aa2.38□□□□□ -2.03
EPHA4-202ENST00000409854 MT1BP07438 61 aa2.37□□□□□ -2.03
EPHA4-202ENST00000409854 SPRR5A0A1B0GTR4 108 aa2.31□□□□□ -2.04
EPHA4-202ENST00000409854 MT1XP80297 61 aa2.29□□□□□ -2.04
EPHA4-202ENST00000409854 KRTAP10-5P60370 271 aa2.29□□□□□ -2.04
EPHA4-202ENST00000409854 FSIP2Q5CZC0 6907 aa2.28□□□□□ -2.04
EPHA4-202ENST00000409854 KRTAP9-9Q9BYP9 154 aa2.28□□□□□ -2.04
EPHA4-202ENST00000409854 KRTAP9-4Q9BYQ2 154 aa2.28□□□□□ -2.04
EPHA4-202ENST00000409854 LOC100996750A0A140TA64 210 aa2.27□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP4-6Q9BYQ5 205 aa2.27□□□□□ -2.05
EPHA4-202ENST00000409854 USH2AO75445 5202 aa2.27□□□□□ -2.05
EPHA4-202ENST00000409854 LCE4AQ5TA78 99 aa2.26□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP9-6A0A140TA67 174 aa2.25□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP9-7A8MTY7 169 aa2.25□□□□□ -2.05
EPHA4-202ENST00000409854 TNP1P09430 55 aa2.24□□□□□ -2.05
EPHA4-202ENST00000409854 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP19-6Q3LI70 58 aa2.22□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP4-12Q9BQ66 201 aa2.22□□□□□ -2.05
EPHA4-202ENST00000409854 KRTAP19-4Q3LI73 84 aa2.2□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP10-7P60409 375 aaPredicted RBP2.19□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.19□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP10-12P60413 245 aa2.18□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP4-8Q9BYQ9 185 aa2.18□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP9-2Q9BYQ4 174 aa2.17□□□□□ -2.06
EPHA4-202ENST00000409854 LCE3AQ5TA76 89 aa2.16□□□□□ -2.06
EPHA4-202ENST00000409854 KRTAP8-1Q8IUC2 63 aa2.13□□□□□ -2.07
EPHA4-202ENST00000409854 LCE5AQ5TCM9 118 aa2.1□□□□□ -2.07
EPHA4-202ENST00000409854 KRTAP4-8A0A0G2JLE6 195 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms