RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 A0A1B0GU33 70 aa7.02□□□□□ -1.29
VPS54-203ENST00000409558 KRTAP10-8P60410 259 aa7.01□□□□□ -1.29
VPS54-203ENST00000409558 COX6B2Q6YFQ2 88 aa7□□□□□ -1.29
VPS54-203ENST00000409558 LPAP08519 4548 aa6.99□□□□□ -1.29
VPS54-203ENST00000409558 EPPK1P58107 5090 aaKnown RBP6.99□□□□□ -1.29
VPS54-203ENST00000409558 H0YAA0 97 aa6.98□□□□□ -1.29
VPS54-203ENST00000409558 LRP2P98164 4655 aa6.98□□□□□ -1.29
VPS54-203ENST00000409558 XP32Q5T750 250 aa6.97□□□□□ -1.29
VPS54-203ENST00000409558 CSAG1Q6PB30 78 aa6.94□□□□□ -1.3
VPS54-203ENST00000409558 H1FX-AS1Q4G0G2 97 aa6.91□□□□□ -1.3
VPS54-203ENST00000409558 TNXBP22105 4242 aa6.91□□□□□ -1.3
VPS54-203ENST00000409558 KRTAP4-5Q9BYR2 181 aa6.9□□□□□ -1.3
VPS54-203ENST00000409558 RPL37P61927 97 aaKnown RBP6.9□□□□□ -1.3
VPS54-203ENST00000409558 ABCA13Q86UQ4 5058 aa6.88□□□□□ -1.31
VPS54-203ENST00000409558 S4R3F8 94 aa6.86□□□□□ -1.31
VPS54-203ENST00000409558 MT1HL1P0DM35 61 aa6.84□□□□□ -1.31
VPS54-203ENST00000409558 P0C880 135 aa6.82□□□□□ -1.32
VPS54-203ENST00000409558 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
VPS54-203ENST00000409558 K7ERS5 55 aa6.79□□□□□ -1.32
VPS54-203ENST00000409558 KRTAP13-4Q3LI77 160 aa6.78□□□□□ -1.32
VPS54-203ENST00000409558 KRTAP3-3Q9BYR6 98 aa6.77□□□□□ -1.32
VPS54-203ENST00000409558 SPINT4Q6UDR6 99 aa6.77□□□□□ -1.33
VPS54-203ENST00000409558 J3QL48 77 aa6.75□□□□□ -1.33
VPS54-203ENST00000409558 MUC2Q02817 5179 aa6.73□□□□□ -1.33
VPS54-203ENST00000409558 KRTAP10-6P60371 365 aaPredicted RBP6.71□□□□□ -1.34
VPS54-203ENST00000409558 KRTAP3-2Q9BYR7 98 aa6.64□□□□□ -1.35
VPS54-203ENST00000409558 C10orf95Q9H7T3 257 aa6.63□□□□□ -1.35
VPS54-203ENST00000409558 HERC2O95714 4834 aa6.62□□□□□ -1.35
VPS54-203ENST00000409558 TPRXLQ17RH7 258 aa6.57□□□□□ -1.36
VPS54-203ENST00000409558 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
VPS54-203ENST00000409558 KRTAP25-1Q3LHN0 102 aa6.56□□□□□ -1.36
VPS54-203ENST00000409558 M0QZ58 72 aa6.54□□□□□ -1.36
VPS54-203ENST00000409558 ROMO1P60602 79 aa6.54□□□□□ -1.36
VPS54-203ENST00000409558 R4GN34 69 aa6.5□□□□□ -1.37
VPS54-203ENST00000409558 KRTAP4-1Q9BYQ7 146 aa6.48□□□□□ -1.37
VPS54-203ENST00000409558 HERC1Q15751 4861 aa6.47□□□□□ -1.37
VPS54-203ENST00000409558 SEC61BP60468 96 aaKnown RBP6.46□□□□□ -1.38
VPS54-203ENST00000409558 LORP23490 312 aaPredicted RBP6.44□□□□□ -1.38
VPS54-203ENST00000409558 KRTAP12-1P59990 96 aa6.41□□□□□ -1.38
VPS54-203ENST00000409558 FAT4Q6V0I7 4981 aa6.39□□□□□ -1.39
VPS54-203ENST00000409558 RNF213Q63HN8 5207 aa6.36□□□□□ -1.39
VPS54-203ENST00000409558 PCLOQ9Y6V0 5065 aa6.3□□□□□ -1.4
VPS54-203ENST00000409558 CAMK2N1Q7Z7J9 78 aa6.25□□□□□ -1.41
VPS54-203ENST00000409558 MUC17Q685J3 4493 aa6.25□□□□□ -1.41
VPS54-203ENST00000409558 M0R2T5 61 aa6.21□□□□□ -1.42
VPS54-203ENST00000409558 H3BS24 57 aa6.19□□□□□ -1.42
VPS54-203ENST00000409558 BIRC6Q9NR09 4857 aa6.19□□□□□ -1.42
VPS54-203ENST00000409558 UBR4Q5T4S7 5183 aa6.17□□□□□ -1.42
VPS54-203ENST00000409558 NDUFAF8A1L188 74 aa6.06□□□□□ -1.44
VPS54-203ENST00000409558 HMCN2Q8NDA2 5059 aa6.04□□□□□ -1.44
VPS54-203ENST00000409558 KRTAP19-2Q3LHN2 52 aa6.03□□□□□ -1.44
VPS54-203ENST00000409558 FLGP20930 4061 aaPredicted RBP5.95□□□□□ -1.46
VPS54-203ENST00000409558 KRTAP10-10P60014 251 aa5.89□□□□□ -1.47
VPS54-203ENST00000409558 KRTAP15-1Q3LI76 137 aa5.87□□□□□ -1.47
VPS54-203ENST00000409558 PLAC4Q8WY50 150 aa5.84□□□□□ -1.47
VPS54-203ENST00000409558 LCE2CQ5TA81 110 aa5.82□□□□□ -1.48
VPS54-203ENST00000409558 TNP1P09430 55 aa5.79□□□□□ -1.48
VPS54-203ENST00000409558 MT1HP80294 61 aa5.76□□□□□ -1.49
VPS54-203ENST00000409558 MT1FP04733 61 aa5.71□□□□□ -1.5
VPS54-203ENST00000409558 USH2AO75445 5202 aa5.71□□□□□ -1.5
VPS54-203ENST00000409558 KRTAP19-1Q8IUB9 90 aa5.69□□□□□ -1.5
VPS54-203ENST00000409558 MT2AP02795 61 aa5.66□□□□□ -1.5
VPS54-203ENST00000409558 LUZP6Q538Z0 58 aa5.64□□□□□ -1.51
VPS54-203ENST00000409558 PP632Q6XCG6 107 aa5.6□□□□□ -1.51
VPS54-203ENST00000409558 FSIP2Q5CZC0 6907 aa5.58□□□□□ -1.52
VPS54-203ENST00000409558 SPRR2GQ9BYE4 73 aa5.57□□□□□ -1.52
VPS54-203ENST00000409558 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
VPS54-203ENST00000409558 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
VPS54-203ENST00000409558 KMT2DO14686 5537 aa5.53□□□□□ -1.52
VPS54-203ENST00000409558 MT1BP07438 61 aa5.39□□□□□ -1.55
VPS54-203ENST00000409558 MT1XP80297 61 aa5.35□□□□□ -1.55
VPS54-203ENST00000409558 KRTAP10-7P60409 375 aaPredicted RBP5.35□□□□□ -1.55
VPS54-203ENST00000409558 KRTAP10-5P60370 271 aa5.34□□□□□ -1.55
VPS54-203ENST00000409558 KRTAP10-12P60413 245 aa5.31□□□□□ -1.56
VPS54-203ENST00000409558 KRTAP9-3Q9BYQ3 159 aa5.29□□□□□ -1.56
VPS54-203ENST00000409558 KRTAP19-8Q3LI54 63 aa5.27□□□□□ -1.57
VPS54-203ENST00000409558 KRTAP12-3P60328 96 aa5.24□□□□□ -1.57
VPS54-203ENST00000409558 LCE2BO14633 110 aa5.23□□□□□ -1.57
VPS54-203ENST00000409558 A0A0A0MQY5 61 aa5.2□□□□□ -1.58
VPS54-203ENST00000409558 KRTAP4-8A0A0G2JLE6 195 aa5.19□□□□□ -1.58
VPS54-203ENST00000409558 KRTAP4-8Q9BYQ9 185 aa5.19□□□□□ -1.58
VPS54-203ENST00000409558 PRO2289Q9P1D8 64 aa5.18□□□□□ -1.58
VPS54-203ENST00000409558 KRTAP23-1A1A580 65 aa5.17□□□□□ -1.58
VPS54-203ENST00000409558 KRTAP8-1Q8IUC2 63 aa5.13□□□□□ -1.59
VPS54-203ENST00000409558 KRTAP19-5Q3LI72 72 aa5.1□□□□□ -1.59
VPS54-203ENST00000409558 SPRR5A0A1B0GTR4 108 aa5.06□□□□□ -1.6
VPS54-203ENST00000409558 LCE2AQ5TA79 106 aaPredicted RBP4.99□□□□□ -1.61
VPS54-203ENST00000409558 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
VPS54-203ENST00000409558 SSPOA2VEC9 5147 aa4.96□□□□□ -1.61
VPS54-203ENST00000409558 DSTQ03001 7570 aaKnown RBP4.96□□□□□ -1.62
VPS54-203ENST00000409558 MUC12Q9UKN1 5478 aa4.9□□□□□ -1.63
VPS54-203ENST00000409558 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.64
VPS54-203ENST00000409558 FCGBPQ9Y6R7 5405 aaPredicted RBP4.83□□□□□ -1.64
VPS54-203ENST00000409558 CRCT1Q9UGL9 99 aa4.81□□□□□ -1.64
VPS54-203ENST00000409558 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
VPS54-203ENST00000409558 KRTAP19-7Q3SYF9 63 aa4.75□□□□□ -1.65
VPS54-203ENST00000409558 OBSCNQ5VST9 7968 aa4.7□□□□□ -1.66
VPS54-203ENST00000409558 SYNE1Q8NF91 8797 aaKnown RBP4.7□□□□□ -1.66
VPS54-203ENST00000409558 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
VPS54-203ENST00000409558 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms