RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PRM1P04553 51 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 DEFB124Q8NES8 71 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 CHD8Q9HCK8 2581 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 NIPBLQ6KC79 2804 aaeCLIP1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 NCOR2Q9Y618 2525 aa1.03□□□□□ -2.25
HMGB1P13-201ENST00000406019 NOTCH1P46531 2555 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 MAP1AP78559 2803 aaPredicted RBP1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 CSMD1Q96PZ7 3565 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 PLECQ15149 4684 aaKnown RBP1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 HIVEP3Q5T1R4 2406 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 VPS13AQ96RL7 3174 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 CFAP47Q6ZTR5 3102 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 PKD1P98161 4303 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 H3BNG1 76 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 KRTAP19-3Q7Z4W3 81 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 SPEGQ15772 3267 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 LRRK2Q5S007 2527 aa1□□□□□ -2.25
HMGB1P13-201ENST00000406019 PTPN13Q12923 2485 aa1□□□□□ -2.25
HMGB1P13-201ENST00000406019 FLGP20930 4061 aaPredicted RBP1□□□□□ -2.25
HMGB1P13-201ENST00000406019 KALRNO60229 2985 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 FAM186AA6NE01 2351 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH9Q9NYC9 4486 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 NSD1Q96L73 2696 aaPredicted RBP0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 UNC79Q9P2D8 2635 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH1Q9P2D7 4330 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 CACNA1AO00555 2505 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH6Q9C0G6 4158 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 GOLGB1Q14789 3259 aaKnown RBP0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 ZANQ9Y493 2812 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 MXRA5Q9NR99 2828 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 FREM2Q5SZK8 3169 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 WDFY4Q6ZS81 3184 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 HUWE1Q7Z6Z7 4374 aaKnown RBP0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 SVEP1Q4LDE5 3571 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH17Q9UFH2 4485 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 SPG11Q96JI7 2443 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 LRP1Q07954 4544 aaKnown RBP0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 UTRNP46939 3433 aa0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 ANKHD1Q8IWZ3 2542 aaKnown RBP0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 CMYA5Q8N3K9 4069 aa0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 SETXQ7Z333 2677 aaKnown RBP0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 PKD1L1Q8TDX9 2849 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 XIRP2A4UGR9 3374 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 USP9XQ93008 2570 aaPredicted RBP0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 C9orf92A6NGG3 77 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 KRTAP8-1Q8IUC2 63 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 DNAH5Q8TE73 4624 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 TRRAPQ9Y4A5 3859 aa0.94□□□□□ -2.26
HMGB1P13-201ENST00000406019 ITPR2Q14571 2701 aa0.94□□□□□ -2.26
HMGB1P13-201ENST00000406019 TEP1Q99973 2627 aaKnown RBP0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 LINC01556Q5JQF7 62 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 CSMD2Q7Z408 3487 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 LAMA3Q16787 3333 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 GPR98Q8WXG9 6306 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 MTORP42345 2549 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 ZFYVE26Q68DK2 2539 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 USP34Q70CQ2 3546 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 TGP01266 2768 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 CFAP46Q8IYW2 2715 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 FAT1Q14517 4588 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 LPAP08519 4548 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 TEX15Q9BXT5 2789 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 SONP18583 2426 aaKnown RBP0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 ACANP16112 2415 aa0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 DYNC1H1Q14204 4646 aaKnown RBP0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 ASPMQ8IZT6 3477 aa0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 ACACBO00763 2458 aa0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 ANKRD11Q6UB99 2663 aaPredicted RBP0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 ADGRG4Q8IZF6 3080 aa0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 SMR3BP02814 79 aaPredicted RBP0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 FLNAP21333 2647 aaKnown RBP0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 LOC400499M0QZD8 3231 aa0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 PKHD1P08F94 4074 aa0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 FLNBO75369 2602 aaKnown RBP0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 TENM3Q9P273 2699 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 UNC80Q8N2C7 3258 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 CD52P31358 61 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 DEFB133Q30KQ1 61 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 UBR4Q5T4S7 5183 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 MYO18BQ8IUG5 2567 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 VPS13CQ709C8 3753 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 FASNP49327 2511 aaKnown RBP0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 TLN2Q9Y4G6 2542 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 EP400Q96L91 3159 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 HTN3P15516 51 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 MUC17Q685J3 4493 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 LAMA1P25391 3075 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 MYO15AQ9UKN7 3530 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 CENPFP49454 3210 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 U3KQA8 63 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 LAMA2P24043 3122 aaKnown RBP0.84□□□□□ -2.27
HMGB1P13-201ENST00000406019 PCLOQ9Y6V0 5065 aa0.84□□□□□ -2.27
HMGB1P13-201ENST00000406019 NBEAL1Q6ZS30 2694 aa0.84□□□□□ -2.28
HMGB1P13-201ENST00000406019 HRNRQ86YZ3 2850 aaPredicted RBP0.84□□□□□ -2.28
HMGB1P13-201ENST00000406019 MGAM2Q2M2H8 2515 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 DEFB4AO15263 64 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 DOPEY1Q5JWR5 2465 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 STAB2Q8WWQ8 2551 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 SYNE1Q8NF91 8797 aaKnown RBP0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 194.7 ms