RNA–Protein interactions for RNA: ENST00000400946.2

LINC01139-201, Transcript of long intergenic non-protein coding RNA 1139, humanhuman

TSL 1 (best) BASIC

Gene LINC01139, Length 1,537 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01139-201ENST00000400946 PKHD1P08F94 4074 aa4.9□□□□□ -1.63
LINC01139-201ENST00000400946 DYNC1H1Q14204 4646 aaKnown RBP4.9□□□□□ -1.63
LINC01139-201ENST00000400946 A6NN06 94 aa4.89□□□□□ -1.63
LINC01139-201ENST00000400946 LINC00304Q8N9R0 145 aa4.89□□□□□ -1.63
LINC01139-201ENST00000400946 A0A1B0GU69 56 aa4.88□□□□□ -1.63
LINC01139-201ENST00000400946 SPINK7P58062 85 aa4.88□□□□□ -1.63
LINC01139-201ENST00000400946 C7orf65Q6ZTY9 151 aa4.88□□□□□ -1.63
LINC01139-201ENST00000400946 A8MU10 97 aa4.87□□□□□ -1.63
LINC01139-201ENST00000400946 SPTSSBQ8NFR3 76 aa4.87□□□□□ -1.63
LINC01139-201ENST00000400946 HERC2O95714 4834 aa4.86□□□□□ -1.63
LINC01139-201ENST00000400946 SPATA8Q6RVD6 105 aa4.86□□□□□ -1.63
LINC01139-201ENST00000400946 KIAA1109Q2LD37 5005 aa4.86□□□□□ -1.63
LINC01139-201ENST00000400946 LINC01554Q52M75 96 aa4.85□□□□□ -1.63
LINC01139-201ENST00000400946 LRP1BQ9NZR2 4599 aa4.84□□□□□ -1.63
LINC01139-201ENST00000400946 DNAH5Q8TE73 4624 aa4.84□□□□□ -1.64
LINC01139-201ENST00000400946 C20orf166-AS1Q96NR2 134 aa4.83□□□□□ -1.64
LINC01139-201ENST00000400946 RETNLBQ9BQ08 111 aa4.83□□□□□ -1.64
LINC01139-201ENST00000400946 A8MUU9 505 aa4.82□□□□□ -1.64
LINC01139-201ENST00000400946 UQCR11O14957 56 aa4.82□□□□□ -1.64
LINC01139-201ENST00000400946 RYR1P21817 5038 aa4.8□□□□□ -1.64
LINC01139-201ENST00000400946 APOBP04114 4563 aaKnown RBP4.79□□□□□ -1.64
LINC01139-201ENST00000400946 HSPG2P98160 4391 aa4.79□□□□□ -1.64
LINC01139-201ENST00000400946 MIR22HGQ0VDD5 57 aa4.78□□□□□ -1.64
LINC01139-201ENST00000400946 KRTAP10-4P60372 401 aaPredicted RBP4.77□□□□□ -1.65
LINC01139-201ENST00000400946 Q8N1X5 172 aa4.76□□□□□ -1.65
LINC01139-201ENST00000400946 PCLOQ9Y6V0 5065 aa4.7□□□□□ -1.66
LINC01139-201ENST00000400946 ABCA13Q86UQ4 5058 aa4.7□□□□□ -1.66
LINC01139-201ENST00000400946 FAT1Q14517 4588 aa4.69□□□□□ -1.66
LINC01139-201ENST00000400946 SMR3BP02814 79 aaPredicted RBP4.69□□□□□ -1.66
LINC01139-201ENST00000400946 Q5VSD8 79 aa4.68□□□□□ -1.66
LINC01139-201ENST00000400946 COX6B2Q6YFQ2 88 aa4.67□□□□□ -1.66
LINC01139-201ENST00000400946 KRTAP23-1A1A580 65 aa4.67□□□□□ -1.66
LINC01139-201ENST00000400946 C9orf92A6NGG3 77 aa4.67□□□□□ -1.66
LINC01139-201ENST00000400946 KRTAP3-1Q9BYR8 98 aa4.66□□□□□ -1.66
LINC01139-201ENST00000400946 KRTAP10-8P60410 259 aa4.64□□□□□ -1.67
LINC01139-201ENST00000400946 VPS13BQ7Z7G8 4022 aa4.63□□□□□ -1.67
LINC01139-201ENST00000400946 A0A1B0GU33 70 aa4.62□□□□□ -1.67
LINC01139-201ENST00000400946 PRAC1Q96KF2 57 aa4.62□□□□□ -1.67
LINC01139-201ENST00000400946 H1FX-AS1Q4G0G2 97 aa4.61□□□□□ -1.67
LINC01139-201ENST00000400946 ADM2Q7Z4H4 148 aa4.61□□□□□ -1.67
LINC01139-201ENST00000400946 RPL37P61927 97 aaKnown RBP4.59□□□□□ -1.67
LINC01139-201ENST00000400946 H0YAA0 97 aa4.57□□□□□ -1.68
LINC01139-201ENST00000400946 MYCBP2O75592 4640 aa4.56□□□□□ -1.68
LINC01139-201ENST00000400946 K7ERS5 55 aa4.55□□□□□ -1.68
LINC01139-201ENST00000400946 FLG2Q5D862 2391 aaPredicted RBP4.55□□□□□ -1.68
LINC01139-201ENST00000400946 PKHD1L1Q86WI1 4243 aa4.55□□□□□ -1.68
LINC01139-201ENST00000400946 LRP1Q07954 4544 aaKnown RBP4.52□□□□□ -1.69
LINC01139-201ENST00000400946 FAT3Q8TDW7 4589 aa4.5□□□□□ -1.69
LINC01139-201ENST00000400946 HERC1Q15751 4861 aa4.5□□□□□ -1.69
LINC01139-201ENST00000400946 LUZP6Q538Z0 58 aa4.5□□□□□ -1.69
LINC01139-201ENST00000400946 DMBT1Q9UGM3 2413 aaPredicted RBP4.48□□□□□ -1.69
LINC01139-201ENST00000400946 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.48□□□□□ -1.69
LINC01139-201ENST00000400946 ROMO1P60602 79 aa4.47□□□□□ -1.69
LINC01139-201ENST00000400946 CSAG1Q6PB30 78 aa4.46□□□□□ -1.69
LINC01139-201ENST00000400946 S4R3F8 94 aa4.46□□□□□ -1.69
LINC01139-201ENST00000400946 MT1HL1P0DM35 61 aa4.46□□□□□ -1.7
LINC01139-201ENST00000400946 KRTAP10-6P60371 365 aaPredicted RBP4.45□□□□□ -1.7
LINC01139-201ENST00000400946 TPRXLQ17RH7 258 aa4.43□□□□□ -1.7
LINC01139-201ENST00000400946 KRTAP25-1Q3LHN0 102 aa4.42□□□□□ -1.7
LINC01139-201ENST00000400946 TNXBP22105 4242 aa4.4□□□□□ -1.71
LINC01139-201ENST00000400946 P0C880 135 aa4.36□□□□□ -1.71
LINC01139-201ENST00000400946 HMCN2Q8NDA2 5059 aa4.35□□□□□ -1.71
LINC01139-201ENST00000400946 M0QZ58 72 aa4.35□□□□□ -1.71
LINC01139-201ENST00000400946 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
LINC01139-201ENST00000400946 CAMK2N1Q7Z7J9 78 aa4.31□□□□□ -1.72
LINC01139-201ENST00000400946 A0A0D9SG42 100 aa4.26□□□□□ -1.73
LINC01139-201ENST00000400946 LRP2P98164 4655 aa4.24□□□□□ -1.73
LINC01139-201ENST00000400946 KRTAP12-1P59990 96 aa4.24□□□□□ -1.73
LINC01139-201ENST00000400946 UBR4Q5T4S7 5183 aa4.23□□□□□ -1.73
LINC01139-201ENST00000400946 KRTAP15-1Q3LI76 137 aa4.22□□□□□ -1.73
LINC01139-201ENST00000400946 LPAP08519 4548 aa4.21□□□□□ -1.73
LINC01139-201ENST00000400946 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
LINC01139-201ENST00000400946 CRIPTQ9P021 101 aa4.21□□□□□ -1.74
LINC01139-201ENST00000400946 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
LINC01139-201ENST00000400946 SPINT4Q6UDR6 99 aa4.16□□□□□ -1.74
LINC01139-201ENST00000400946 R4GN34 69 aa4.13□□□□□ -1.75
LINC01139-201ENST00000400946 KRTAP5-11Q6L8G4 156 aa4.11□□□□□ -1.75
LINC01139-201ENST00000400946 RNF213Q63HN8 5207 aa4.1□□□□□ -1.75
LINC01139-201ENST00000400946 KRTAP10-7P60409 375 aaPredicted RBP4.05□□□□□ -1.76
LINC01139-201ENST00000400946 KRTAP19-2Q3LHN2 52 aa4.05□□□□□ -1.76
LINC01139-201ENST00000400946 C10orf95Q9H7T3 257 aa4.05□□□□□ -1.76
LINC01139-201ENST00000400946 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
LINC01139-201ENST00000400946 MUC2Q02817 5179 aa4.03□□□□□ -1.76
LINC01139-201ENST00000400946 KRTAP4-1Q9BYQ7 146 aa4.03□□□□□ -1.76
LINC01139-201ENST00000400946 PP632Q6XCG6 107 aa4□□□□□ -1.77
LINC01139-201ENST00000400946 KRTAP5-9P26371 169 aa3.99□□□□□ -1.77
LINC01139-201ENST00000400946 FAT4Q6V0I7 4981 aa3.92□□□□□ -1.78
LINC01139-201ENST00000400946 PLAC4Q8WY50 150 aa3.86□□□□□ -1.79
LINC01139-201ENST00000400946 TNP1P09430 55 aa3.84□□□□□ -1.8
LINC01139-201ENST00000400946 PRO2289Q9P1D8 64 aa3.84□□□□□ -1.8
LINC01139-201ENST00000400946 SPRR2GQ9BYE4 73 aa3.81□□□□□ -1.8
LINC01139-201ENST00000400946 KRTAP5-1Q6L8H4 278 aa3.8□□□□□ -1.8
LINC01139-201ENST00000400946 KRTAP5-4Q6L8H1 288 aa3.79□□□□□ -1.8
LINC01139-201ENST00000400946 MT1HP80294 61 aa3.78□□□□□ -1.8
LINC01139-201ENST00000400946 LCE1AQ5T7P2 110 aa3.75□□□□□ -1.81
LINC01139-201ENST00000400946 FLGP20930 4061 aaPredicted RBP3.71□□□□□ -1.82
LINC01139-201ENST00000400946 KRTAP4-4Q9BYR3 166 aa3.7□□□□□ -1.82
LINC01139-201ENST00000400946 M0R2T5 61 aa3.69□□□□□ -1.82
LINC01139-201ENST00000400946 SPRR5A0A1B0GTR4 108 aa3.68□□□□□ -1.82
LINC01139-201ENST00000400946 KRTAP19-8Q3LI54 63 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms