RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 KRTAP10-10P60014 251 aa1.44□□□□□ -2.18
CHD9-202ENST00000398510 KRTAP1-4P0C5Y4 121 aa1.43□□□□□ -2.18
CHD9-202ENST00000398510 MT3P25713 68 aa1.43□□□□□ -2.18
CHD9-202ENST00000398510 A0A1B0GVY2 172 aa1.42□□□□□ -2.18
CHD9-202ENST00000398510 DNAH1Q9P2D7 4330 aa1.41□□□□□ -2.18
CHD9-202ENST00000398510 DNAH2Q9P225 4427 aa1.4□□□□□ -2.19
CHD9-202ENST00000398510 KRTAP11-1Q8IUC1 163 aa1.4□□□□□ -2.19
CHD9-202ENST00000398510 LCE2AQ5TA79 106 aaPredicted RBP1.4□□□□□ -2.19
CHD9-202ENST00000398510 KRTAP13-4Q3LI77 160 aa1.4□□□□□ -2.19
CHD9-202ENST00000398510 PKD1P98161 4303 aa1.39□□□□□ -2.19
CHD9-202ENST00000398510 HUWE1Q7Z6Z7 4374 aaKnown RBP1.38□□□□□ -2.19
CHD9-202ENST00000398510 LORP23490 312 aaPredicted RBP1.38□□□□□ -2.19
CHD9-202ENST00000398510 PKHD1P08F94 4074 aa1.38□□□□□ -2.19
CHD9-202ENST00000398510 RYR1P21817 5038 aa1.37□□□□□ -2.19
CHD9-202ENST00000398510 STARD9Q9P2P6 4700 aa1.36□□□□□ -2.19
CHD9-202ENST00000398510 INE1O15225 51 aa1.36□□□□□ -2.19
CHD9-202ENST00000398510 VPS13DQ5THJ4 4388 aa1.35□□□□□ -2.19
CHD9-202ENST00000398510 RYR3Q15413 4870 aa1.35□□□□□ -2.19
CHD9-202ENST00000398510 FAT2Q9NYQ8 4349 aa1.34□□□□□ -2.19
CHD9-202ENST00000398510 PKHD1L1Q86WI1 4243 aa1.34□□□□□ -2.19
CHD9-202ENST00000398510 KRTAP7-1Q8IUC3 87 aa1.34□□□□□ -2.2
CHD9-202ENST00000398510 DNAH9Q9NYC9 4486 aa1.34□□□□□ -2.2
CHD9-202ENST00000398510 PLECQ15149 4684 aaKnown RBP1.33□□□□□ -2.2
CHD9-202ENST00000398510 DNAH11Q96DT5 4516 aa1.31□□□□□ -2.2
CHD9-202ENST00000398510 DNAH17Q9UFH2 4485 aa1.31□□□□□ -2.2
CHD9-202ENST00000398510 LCE2CQ5TA81 110 aa1.31□□□□□ -2.2
CHD9-202ENST00000398510 LCE2BO14633 110 aa1.31□□□□□ -2.2
CHD9-202ENST00000398510 KRTAP10-12P60413 245 aa1.31□□□□□ -2.2
CHD9-202ENST00000398510 HYDINQ4G0P3 5121 aa1.3□□□□□ -2.2
CHD9-202ENST00000398510 KMT2CQ8NEZ4 4911 aaKnown RBP1.29□□□□□ -2.2
CHD9-202ENST00000398510 KRTAP15-1Q3LI76 137 aa1.28□□□□□ -2.2
CHD9-202ENST00000398510 TNXBP22105 4242 aa1.28□□□□□ -2.2
CHD9-202ENST00000398510 KRTAP3-1Q9BYR8 98 aa1.28□□□□□ -2.21
CHD9-202ENST00000398510 KRTAP12-2P59991 146 aa1.27□□□□□ -2.21
CHD9-202ENST00000398510 OBSCNQ5VST9 7968 aa1.27□□□□□ -2.21
CHD9-202ENST00000398510 DNAH8Q96JB1 4490 aa1.27□□□□□ -2.21
CHD9-202ENST00000398510 PCLOQ9Y6V0 5065 aa1.26□□□□□ -2.21
CHD9-202ENST00000398510 DNAH5Q8TE73 4624 aa1.26□□□□□ -2.21
CHD9-202ENST00000398510 KRTAP12-1P59990 96 aa1.25□□□□□ -2.21
CHD9-202ENST00000398510 SACSQ9NZJ4 4579 aa1.24□□□□□ -2.21
CHD9-202ENST00000398510 MYCBP2O75592 4640 aa1.24□□□□□ -2.21
CHD9-202ENST00000398510 FAT3Q8TDW7 4589 aa1.22□□□□□ -2.21
CHD9-202ENST00000398510 HSPG2P98160 4391 aa1.21□□□□□ -2.22
CHD9-202ENST00000398510 KRTAP8-1Q8IUC2 63 aa1.21□□□□□ -2.22
CHD9-202ENST00000398510 KRTAP12-3P60328 96 aa1.21□□□□□ -2.22
CHD9-202ENST00000398510 FLGP20930 4061 aaPredicted RBP1.21□□□□□ -2.22
CHD9-202ENST00000398510 KRTAP10-6P60371 365 aaPredicted RBP1.2□□□□□ -2.22
CHD9-202ENST00000398510 MT1HL1P0DM35 61 aa1.19□□□□□ -2.22
CHD9-202ENST00000398510 KRTAP10-7P60409 375 aaPredicted RBP1.19□□□□□ -2.22
CHD9-202ENST00000398510 LRP1BQ9NZR2 4599 aa1.19□□□□□ -2.22
CHD9-202ENST00000398510 APOBP04114 4563 aaKnown RBP1.18□□□□□ -2.22
CHD9-202ENST00000398510 LRP1Q07954 4544 aaKnown RBP1.17□□□□□ -2.22
CHD9-202ENST00000398510 EPPK1P58107 5090 aaKnown RBP1.16□□□□□ -2.22
CHD9-202ENST00000398510 SPRR2GQ9BYE4 73 aa1.16□□□□□ -2.22
CHD9-202ENST00000398510 KMT2DO14686 5537 aa1.15□□□□□ -2.22
CHD9-202ENST00000398510 KRTAP10-4P60372 401 aaPredicted RBP1.15□□□□□ -2.23
CHD9-202ENST00000398510 DYNC1H1Q14204 4646 aaKnown RBP1.15□□□□□ -2.23
CHD9-202ENST00000398510 MUC12Q9UKN1 5478 aa1.15□□□□□ -2.23
CHD9-202ENST00000398510 FAT1Q14517 4588 aa1.14□□□□□ -2.23
CHD9-202ENST00000398510 ABCA13Q86UQ4 5058 aa1.12□□□□□ -2.23
CHD9-202ENST00000398510 RYR2Q92736 4967 aa1.12□□□□□ -2.23
CHD9-202ENST00000398510 LPAP08519 4548 aa1.12□□□□□ -2.23
CHD9-202ENST00000398510 SYNE1Q8NF91 8797 aaKnown RBP1.12□□□□□ -2.23
CHD9-202ENST00000398510 KRTAP12-4P60329 112 aa1.11□□□□□ -2.23
CHD9-202ENST00000398510 DSTQ03001 7570 aaKnown RBP1.1□□□□□ -2.23
CHD9-202ENST00000398510 UBR4Q5T4S7 5183 aa1.1□□□□□ -2.23
CHD9-202ENST00000398510 KIAA1109Q2LD37 5005 aa1.09□□□□□ -2.23
CHD9-202ENST00000398510 SPRR2FQ96RM1 72 aa1.08□□□□□ -2.24
CHD9-202ENST00000398510 LCE5AQ5TCM9 118 aa1.08□□□□□ -2.24
CHD9-202ENST00000398510 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
CHD9-202ENST00000398510 LCE3AQ5TA76 89 aa1.08□□□□□ -2.24
CHD9-202ENST00000398510 MT1HP80294 61 aa1.08□□□□□ -2.24
CHD9-202ENST00000398510 HERC1Q15751 4861 aa1.08□□□□□ -2.24
CHD9-202ENST00000398510 MDN1Q9NU22 5596 aa1.07□□□□□ -2.24
CHD9-202ENST00000398510 KRTAP4-5Q9BYR2 181 aa1.06□□□□□ -2.24
CHD9-202ENST00000398510 LCE3CQ5T5A8 94 aa1.06□□□□□ -2.24
CHD9-202ENST00000398510 KRTAP2-2Q9BYT5 123 aa1.06□□□□□ -2.24
CHD9-202ENST00000398510 CRCT1Q9UGL9 99 aa1.05□□□□□ -2.24
CHD9-202ENST00000398510 KRTAP9-6A0A140TA67 174 aa1.05□□□□□ -2.24
CHD9-202ENST00000398510 RNF213Q63HN8 5207 aa1.05□□□□□ -2.24
CHD9-202ENST00000398510 MUC2Q02817 5179 aa1.05□□□□□ -2.24
CHD9-202ENST00000398510 KRTAP10-5P60370 271 aa1.04□□□□□ -2.24
CHD9-202ENST00000398510 SPRR2DP22532 72 aa1.04□□□□□ -2.24
CHD9-202ENST00000398510 LRP2P98164 4655 aa1.03□□□□□ -2.24
CHD9-202ENST00000398510 SPRR2EP22531 72 aa1.03□□□□□ -2.24
CHD9-202ENST00000398510 SPRR2BP35325 72 aa1.03□□□□□ -2.24
CHD9-202ENST00000398510 SPRR2AP35326 72 aa1.03□□□□□ -2.24
CHD9-202ENST00000398510 FAT4Q6V0I7 4981 aa1.03□□□□□ -2.24
CHD9-202ENST00000398510 BIRC6Q9NR09 4857 aa1.02□□□□□ -2.25
CHD9-202ENST00000398510 MT1GP13640 62 aa1.01□□□□□ -2.25
CHD9-202ENST00000398510 MT2AP02795 61 aa1.01□□□□□ -2.25
CHD9-202ENST00000398510 KRTAP19-8Q3LI54 63 aa1□□□□□ -2.25
CHD9-202ENST00000398510 MT1FP04733 61 aa1□□□□□ -2.25
CHD9-202ENST00000398510 KRTAP9-4Q9BYQ2 154 aa1□□□□□ -2.25
CHD9-202ENST00000398510 KRTAP4-1Q9BYQ7 146 aa1□□□□□ -2.25
CHD9-202ENST00000398510 LCE1AQ5T7P2 110 aa1□□□□□ -2.25
CHD9-202ENST00000398510 KRTAP9-9Q9BYP9 154 aa1□□□□□ -2.25
CHD9-202ENST00000398510 HERC2O95714 4834 aa1□□□□□ -2.25
CHD9-202ENST00000398510 MUC17Q685J3 4493 aa1□□□□□ -2.25
CHD9-202ENST00000398510 MUC5BQ9HC84 5762 aaPredicted RBP0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms