RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 ROMO1P60602 79 aa5.21□□□□□ -1.57
UBE2D3-208ENST00000394803 APOBP04114 4563 aaKnown RBP5.21□□□□□ -1.57
UBE2D3-208ENST00000394803 S4R3F8 94 aa5.2□□□□□ -1.58
UBE2D3-208ENST00000394803 KIAA1109Q2LD37 5005 aa5.2□□□□□ -1.58
UBE2D3-208ENST00000394803 KRTAP10-8P60410 259 aa5.17□□□□□ -1.58
UBE2D3-208ENST00000394803 RYR1P21817 5038 aa5.17□□□□□ -1.58
UBE2D3-208ENST00000394803 FAT1Q14517 4588 aa5.16□□□□□ -1.58
UBE2D3-208ENST00000394803 KRTAP10-6P60371 365 aaPredicted RBP5.15□□□□□ -1.58
UBE2D3-208ENST00000394803 FLG2Q5D862 2391 aaPredicted RBP5.15□□□□□ -1.59
UBE2D3-208ENST00000394803 XP32Q5T750 250 aa5.13□□□□□ -1.59
UBE2D3-208ENST00000394803 HSPG2P98160 4391 aa5.13□□□□□ -1.59
UBE2D3-208ENST00000394803 BIRC6Q9NR09 4857 aa5.12□□□□□ -1.59
UBE2D3-208ENST00000394803 KRTAP17-1Q9BYP8 105 aa5.12□□□□□ -1.59
UBE2D3-208ENST00000394803 Q5VSD8 79 aa5.1□□□□□ -1.59
UBE2D3-208ENST00000394803 LCE2BO14633 110 aa5.09□□□□□ -1.59
UBE2D3-208ENST00000394803 A0A0D9SG42 100 aa5.08□□□□□ -1.6
UBE2D3-208ENST00000394803 H3BS24 57 aa5.06□□□□□ -1.6
UBE2D3-208ENST00000394803 KRTAP13-4Q3LI77 160 aa5.06□□□□□ -1.6
UBE2D3-208ENST00000394803 TNXBP22105 4242 aa5.04□□□□□ -1.6
UBE2D3-208ENST00000394803 FAT3Q8TDW7 4589 aa5.04□□□□□ -1.6
UBE2D3-208ENST00000394803 CRIPTQ9P021 101 aa5.04□□□□□ -1.6
UBE2D3-208ENST00000394803 ABCA13Q86UQ4 5058 aa5.03□□□□□ -1.6
UBE2D3-208ENST00000394803 M0QZ58 72 aa5.03□□□□□ -1.6
UBE2D3-208ENST00000394803 HERC2O95714 4834 aa5.01□□□□□ -1.61
UBE2D3-208ENST00000394803 P0C880 135 aa5.01□□□□□ -1.61
UBE2D3-208ENST00000394803 KRTAP4-5Q9BYR2 181 aa5.01□□□□□ -1.61
UBE2D3-208ENST00000394803 MYCBP2O75592 4640 aa5□□□□□ -1.61
UBE2D3-208ENST00000394803 DMBT1Q9UGM3 2413 aaPredicted RBP4.99□□□□□ -1.61
UBE2D3-208ENST00000394803 LRP1Q07954 4544 aaKnown RBP4.99□□□□□ -1.61
UBE2D3-208ENST00000394803 TPRXLQ17RH7 258 aa4.98□□□□□ -1.61
UBE2D3-208ENST00000394803 SPINT4Q6UDR6 99 aa4.98□□□□□ -1.61
UBE2D3-208ENST00000394803 KRTAP12-1P59990 96 aa4.95□□□□□ -1.62
UBE2D3-208ENST00000394803 KRTAP12-2P59991 146 aa4.95□□□□□ -1.62
UBE2D3-208ENST00000394803 PCLOQ9Y6V0 5065 aa4.94□□□□□ -1.62
UBE2D3-208ENST00000394803 MT1HL1P0DM35 61 aa4.92□□□□□ -1.62
UBE2D3-208ENST00000394803 C10orf95Q9H7T3 257 aa4.87□□□□□ -1.63
UBE2D3-208ENST00000394803 LCE2AQ5TA79 106 aaPredicted RBP4.86□□□□□ -1.63
UBE2D3-208ENST00000394803 R4GN34 69 aa4.83□□□□□ -1.64
UBE2D3-208ENST00000394803 SEC61BP60468 96 aaKnown RBP4.82□□□□□ -1.64
UBE2D3-208ENST00000394803 KRTAP15-1Q3LI76 137 aa4.82□□□□□ -1.64
UBE2D3-208ENST00000394803 HERC1Q15751 4861 aa4.77□□□□□ -1.65
UBE2D3-208ENST00000394803 LCE2CQ5TA81 110 aa4.73□□□□□ -1.65
UBE2D3-208ENST00000394803 NDUFAF8A1L188 74 aa4.71□□□□□ -1.66
UBE2D3-208ENST00000394803 PP632Q6XCG6 107 aa4.68□□□□□ -1.66
UBE2D3-208ENST00000394803 LPAP08519 4548 aa4.67□□□□□ -1.66
UBE2D3-208ENST00000394803 LORP23490 312 aaPredicted RBP4.66□□□□□ -1.66
UBE2D3-208ENST00000394803 LRP2P98164 4655 aa4.63□□□□□ -1.67
UBE2D3-208ENST00000394803 HMCN2Q8NDA2 5059 aa4.62□□□□□ -1.67
UBE2D3-208ENST00000394803 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
UBE2D3-208ENST00000394803 CAMK2N1Q7Z7J9 78 aa4.61□□□□□ -1.67
UBE2D3-208ENST00000394803 KRTAP4-1Q9BYQ7 146 aa4.53□□□□□ -1.68
UBE2D3-208ENST00000394803 MUC17Q685J3 4493 aa4.53□□□□□ -1.68
UBE2D3-208ENST00000394803 KRTAP23-1A1A580 65 aa4.52□□□□□ -1.69
UBE2D3-208ENST00000394803 LUZP6Q538Z0 58 aa4.52□□□□□ -1.69
UBE2D3-208ENST00000394803 UBR4Q5T4S7 5183 aa4.52□□□□□ -1.69
UBE2D3-208ENST00000394803 KRTAP19-2Q3LHN2 52 aa4.51□□□□□ -1.69
UBE2D3-208ENST00000394803 TNP1P09430 55 aa4.48□□□□□ -1.69
UBE2D3-208ENST00000394803 MUC2Q02817 5179 aa4.46□□□□□ -1.7
UBE2D3-208ENST00000394803 RNF213Q63HN8 5207 aa4.46□□□□□ -1.7
UBE2D3-208ENST00000394803 A0A0A0MQY5 61 aa4.37□□□□□ -1.71
UBE2D3-208ENST00000394803 LOC100996750A0A140TA64 210 aa4.37□□□□□ -1.71
UBE2D3-208ENST00000394803 KRTAP4-6Q9BYQ5 205 aa4.37□□□□□ -1.71
UBE2D3-208ENST00000394803 FLGP20930 4061 aaPredicted RBP4.34□□□□□ -1.71
UBE2D3-208ENST00000394803 SPRR2GQ9BYE4 73 aa4.3□□□□□ -1.72
UBE2D3-208ENST00000394803 SPRR5A0A1B0GTR4 108 aa4.29□□□□□ -1.72
UBE2D3-208ENST00000394803 FAT4Q6V0I7 4981 aa4.28□□□□□ -1.72
UBE2D3-208ENST00000394803 M0R2T5 61 aa4.21□□□□□ -1.74
UBE2D3-208ENST00000394803 KRTAP19-1Q8IUB9 90 aa4.18□□□□□ -1.74
UBE2D3-208ENST00000394803 KRTAP10-10P60014 251 aa4.11□□□□□ -1.75
UBE2D3-208ENST00000394803 MT1HP80294 61 aa4.11□□□□□ -1.75
UBE2D3-208ENST00000394803 LCE3AQ5TA76 89 aa4.11□□□□□ -1.75
UBE2D3-208ENST00000394803 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
UBE2D3-208ENST00000394803 KRTAP8-1Q8IUC2 63 aa4.08□□□□□ -1.76
UBE2D3-208ENST00000394803 MT2AP02795 61 aa4.07□□□□□ -1.76
UBE2D3-208ENST00000394803 MT1FP04733 61 aa4.05□□□□□ -1.76
UBE2D3-208ENST00000394803 KRTAP4-8Q9BYQ9 185 aa4.04□□□□□ -1.76
UBE2D3-208ENST00000394803 KRTAP9-8Q9BYQ0 159 aa4.02□□□□□ -1.77
UBE2D3-208ENST00000394803 KRTAP10-12P60413 245 aa3.98□□□□□ -1.77
UBE2D3-208ENST00000394803 PRO2289Q9P1D8 64 aa3.97□□□□□ -1.77
UBE2D3-208ENST00000394803 INE1O15225 51 aa3.97□□□□□ -1.77
UBE2D3-208ENST00000394803 KRTAP12-3P60328 96 aa3.97□□□□□ -1.77
UBE2D3-208ENST00000394803 KRTAP10-5P60370 271 aa3.97□□□□□ -1.77
UBE2D3-208ENST00000394803 MT1BP07438 61 aa3.96□□□□□ -1.78
UBE2D3-208ENST00000394803 MT1XP80297 61 aa3.95□□□□□ -1.78
UBE2D3-208ENST00000394803 KRTAP9-2Q9BYQ4 174 aa3.92□□□□□ -1.78
UBE2D3-208ENST00000394803 KRTAP9-6A0A140TA67 174 aa3.9□□□□□ -1.79
UBE2D3-208ENST00000394803 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.79
UBE2D3-208ENST00000394803 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.89□□□□□ -1.79
UBE2D3-208ENST00000394803 LCE3BQ5TA77 95 aa3.87□□□□□ -1.79
UBE2D3-208ENST00000394803 KRTAP9-3Q9BYQ3 159 aa3.85□□□□□ -1.79
UBE2D3-208ENST00000394803 KRTAP10-7P60409 375 aaPredicted RBP3.81□□□□□ -1.8
UBE2D3-208ENST00000394803 FSIP2Q5CZC0 6907 aa3.76□□□□□ -1.81
UBE2D3-208ENST00000394803 USH2AO75445 5202 aa3.75□□□□□ -1.81
UBE2D3-208ENST00000394803 KRTAP19-4Q3LI73 84 aa3.74□□□□□ -1.81
UBE2D3-208ENST00000394803 LCE3CQ5T5A8 94 aa3.74□□□□□ -1.81
UBE2D3-208ENST00000394803 KRTAP9-9Q9BYP9 154 aa3.72□□□□□ -1.81
UBE2D3-208ENST00000394803 KRTAP9-4Q9BYQ2 154 aa3.72□□□□□ -1.81
UBE2D3-208ENST00000394803 KRTAP19-5Q3LI72 72 aa3.71□□□□□ -1.82
UBE2D3-208ENST00000394803 KRTAP4-8A0A0G2JLE6 195 aa3.7□□□□□ -1.82
UBE2D3-208ENST00000394803 SSPOA2VEC9 5147 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms