RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 BIRC6Q9NR09 4857 aa4.8□□□□□ -1.64
RTN4-206ENST00000394611 FAT1Q14517 4588 aa4.8□□□□□ -1.64
RTN4-206ENST00000394611 HSPG2P98160 4391 aa4.79□□□□□ -1.64
RTN4-206ENST00000394611 VPS13BQ7Z7G8 4022 aa4.77□□□□□ -1.65
RTN4-206ENST00000394611 KRTAP17-1Q9BYP8 105 aa4.77□□□□□ -1.65
RTN4-206ENST00000394611 KRTAP16-1A8MUX0 517 aa4.76□□□□□ -1.65
RTN4-206ENST00000394611 KRTAP1-4P0C5Y4 121 aa4.72□□□□□ -1.65
RTN4-206ENST00000394611 S4R3F8 94 aa4.72□□□□□ -1.65
RTN4-206ENST00000394611 Q5VSD8 79 aa4.7□□□□□ -1.66
RTN4-206ENST00000394611 HERC2O95714 4834 aa4.69□□□□□ -1.66
RTN4-206ENST00000394611 KRTAP10-4P60372 401 aaPredicted RBP4.68□□□□□ -1.66
RTN4-206ENST00000394611 KRTAP4-5Q9BYR2 181 aa4.68□□□□□ -1.66
RTN4-206ENST00000394611 P0C880 135 aa4.68□□□□□ -1.66
RTN4-206ENST00000394611 ABCA13Q86UQ4 5058 aa4.65□□□□□ -1.66
RTN4-206ENST00000394611 M0QZ58 72 aa4.64□□□□□ -1.67
RTN4-206ENST00000394611 KRTAP3-1Q9BYR8 98 aa4.64□□□□□ -1.67
RTN4-206ENST00000394611 C20orf166-AS1Q96NR2 134 aa4.62□□□□□ -1.67
RTN4-206ENST00000394611 LRP1Q07954 4544 aaKnown RBP4.62□□□□□ -1.67
RTN4-206ENST00000394611 TPRXLQ17RH7 258 aa4.62□□□□□ -1.67
RTN4-206ENST00000394611 R4GN34 69 aa4.62□□□□□ -1.67
RTN4-206ENST00000394611 PKHD1L1Q86WI1 4243 aa4.62□□□□□ -1.67
RTN4-206ENST00000394611 MYCBP2O75592 4640 aa4.62□□□□□ -1.67
RTN4-206ENST00000394611 CAMK2N1Q7Z7J9 78 aa4.6□□□□□ -1.67
RTN4-206ENST00000394611 KRTAP13-4Q3LI77 160 aa4.59□□□□□ -1.67
RTN4-206ENST00000394611 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
RTN4-206ENST00000394611 FAT3Q8TDW7 4589 aa4.58□□□□□ -1.68
RTN4-206ENST00000394611 PCLOQ9Y6V0 5065 aa4.57□□□□□ -1.68
RTN4-206ENST00000394611 KRTAP12-2P59991 146 aa4.54□□□□□ -1.68
RTN4-206ENST00000394611 TNXBP22105 4242 aa4.52□□□□□ -1.69
RTN4-206ENST00000394611 KRTAP10-8P60410 259 aa4.52□□□□□ -1.69
RTN4-206ENST00000394611 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
RTN4-206ENST00000394611 MT1HL1P0DM35 61 aa4.49□□□□□ -1.69
RTN4-206ENST00000394611 J3QL48 77 aa4.46□□□□□ -1.7
RTN4-206ENST00000394611 KRTAP10-6P60371 365 aaPredicted RBP4.44□□□□□ -1.7
RTN4-206ENST00000394611 HERC1Q15751 4861 aa4.42□□□□□ -1.7
RTN4-206ENST00000394611 XP32Q5T750 250 aa4.42□□□□□ -1.7
RTN4-206ENST00000394611 PLAC4Q8WY50 150 aa4.4□□□□□ -1.71
RTN4-206ENST00000394611 KRTAP12-1P59990 96 aa4.38□□□□□ -1.71
RTN4-206ENST00000394611 RPS29P62273 56 aaKnown RBP4.35□□□□□ -1.71
RTN4-206ENST00000394611 KRTAP3-3Q9BYR6 98 aa4.34□□□□□ -1.71
RTN4-206ENST00000394611 KRTAP3-2Q9BYR7 98 aa4.32□□□□□ -1.72
RTN4-206ENST00000394611 LPAP08519 4548 aa4.31□□□□□ -1.72
RTN4-206ENST00000394611 KRTAP15-1Q3LI76 137 aa4.31□□□□□ -1.72
RTN4-206ENST00000394611 HMCN2Q8NDA2 5059 aa4.3□□□□□ -1.72
RTN4-206ENST00000394611 M0R2T5 61 aa4.28□□□□□ -1.72
RTN4-206ENST00000394611 LRP2P98164 4655 aa4.25□□□□□ -1.73
RTN4-206ENST00000394611 LORP23490 312 aaPredicted RBP4.18□□□□□ -1.74
RTN4-206ENST00000394611 UBR4Q5T4S7 5183 aa4.17□□□□□ -1.74
RTN4-206ENST00000394611 SEC61BP60468 96 aaKnown RBP4.17□□□□□ -1.74
RTN4-206ENST00000394611 TNP1P09430 55 aa4.13□□□□□ -1.75
RTN4-206ENST00000394611 MUC2Q02817 5179 aa4.1□□□□□ -1.75
RTN4-206ENST00000394611 RNF213Q63HN8 5207 aa4.1□□□□□ -1.75
RTN4-206ENST00000394611 MUC17Q685J3 4493 aa4.09□□□□□ -1.75
RTN4-206ENST00000394611 KRTAP4-1Q9BYQ7 146 aa4.05□□□□□ -1.76
RTN4-206ENST00000394611 PP632Q6XCG6 107 aa3.99□□□□□ -1.77
RTN4-206ENST00000394611 FAT4Q6V0I7 4981 aa3.93□□□□□ -1.78
RTN4-206ENST00000394611 KRTAP10-10P60014 251 aa3.89□□□□□ -1.79
RTN4-206ENST00000394611 KRTAP19-2Q3LHN2 52 aa3.89□□□□□ -1.79
RTN4-206ENST00000394611 LCE2CQ5TA81 110 aa3.86□□□□□ -1.79
RTN4-206ENST00000394611 FLGP20930 4061 aaPredicted RBP3.82□□□□□ -1.8
RTN4-206ENST00000394611 MT1HP80294 61 aa3.8□□□□□ -1.8
RTN4-206ENST00000394611 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
RTN4-206ENST00000394611 LCE2AQ5TA79 106 aaPredicted RBP3.76□□□□□ -1.81
RTN4-206ENST00000394611 OBSCNQ5VST9 7968 aa3.74□□□□□ -1.81
RTN4-206ENST00000394611 FSIP2Q5CZC0 6907 aa3.65□□□□□ -1.83
RTN4-206ENST00000394611 KRTAP9-8Q9BYQ0 159 aa3.63□□□□□ -1.83
RTN4-206ENST00000394611 MT2AP02795 61 aa3.6□□□□□ -1.83
RTN4-206ENST00000394611 PRO2289Q9P1D8 64 aa3.6□□□□□ -1.83
RTN4-206ENST00000394611 MT1FP04733 61 aa3.59□□□□□ -1.83
RTN4-206ENST00000394611 KRTAP12-3P60328 96 aa3.58□□□□□ -1.84
RTN4-206ENST00000394611 KRTAP10-12P60413 245 aa3.56□□□□□ -1.84
RTN4-206ENST00000394611 CRCT1Q9UGL9 99 aa3.56□□□□□ -1.84
RTN4-206ENST00000394611 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
RTN4-206ENST00000394611 KRTAP9-3Q9BYQ3 159 aa3.5□□□□□ -1.85
RTN4-206ENST00000394611 KMT2DO14686 5537 aa3.48□□□□□ -1.85
RTN4-206ENST00000394611 USH2AO75445 5202 aa3.47□□□□□ -1.85
RTN4-206ENST00000394611 INE1O15225 51 aa3.47□□□□□ -1.85
RTN4-206ENST00000394611 KRTAP9-2Q9BYQ4 174 aa3.46□□□□□ -1.86
RTN4-206ENST00000394611 LCE2BO14633 110 aa3.45□□□□□ -1.86
RTN4-206ENST00000394611 LCE2DQ5TA82 110 aaPredicted RBP3.45□□□□□ -1.86
RTN4-206ENST00000394611 KRTAP19-1Q8IUB9 90 aa3.45□□□□□ -1.86
RTN4-206ENST00000394611 DSTQ03001 7570 aaKnown RBP3.42□□□□□ -1.86
RTN4-206ENST00000394611 SPRR2GQ9BYE4 73 aa3.41□□□□□ -1.86
RTN4-206ENST00000394611 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.87
RTN4-206ENST00000394611 SSPOA2VEC9 5147 aa3.38□□□□□ -1.87
RTN4-206ENST00000394611 SPRR5A0A1B0GTR4 108 aa3.37□□□□□ -1.87
RTN4-206ENST00000394611 KRTAP23-1A1A580 65 aa3.35□□□□□ -1.87
RTN4-206ENST00000394611 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
RTN4-206ENST00000394611 MT1BP07438 61 aa3.35□□□□□ -1.87
RTN4-206ENST00000394611 KRTAP19-8Q3LI54 63 aa3.34□□□□□ -1.87
RTN4-206ENST00000394611 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
RTN4-206ENST00000394611 KRTAP8-1Q8IUC2 63 aa3.31□□□□□ -1.88
RTN4-206ENST00000394611 KRTAP4-8A0A0G2JLE6 195 aa3.31□□□□□ -1.88
RTN4-206ENST00000394611 KRTAP4-8Q9BYQ9 185 aa3.31□□□□□ -1.88
RTN4-206ENST00000394611 KRTAP4-7Q9BYR0 210 aa3.31□□□□□ -1.88
RTN4-206ENST00000394611 KRTAP10-5P60370 271 aa3.29□□□□□ -1.88
RTN4-206ENST00000394611 MT1XP80297 61 aa3.27□□□□□ -1.89
RTN4-206ENST00000394611 KRTAP9-6A0A140TA67 174 aa3.25□□□□□ -1.89
RTN4-206ENST00000394611 KRTAP19-6Q3LI70 58 aa3.24□□□□□ -1.89
RTN4-206ENST00000394611 LCE3CQ5T5A8 94 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms