RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 Q8N1X5 172 aa6.21□□□□□ -1.41
CUX1-204ENST00000393824 A8MUU9 505 aa6.21□□□□□ -1.42
CUX1-204ENST00000393824 A0A0A0MQY5 61 aa6.19□□□□□ -1.42
CUX1-204ENST00000393824 LINC00304Q8N9R0 145 aa6.16□□□□□ -1.42
CUX1-204ENST00000393824 PCLOQ9Y6V0 5065 aa6.15□□□□□ -1.42
CUX1-204ENST00000393824 H0YAA0 97 aa6.15□□□□□ -1.42
CUX1-204ENST00000393824 DMBT1Q9UGM3 2413 aaPredicted RBP6.13□□□□□ -1.43
CUX1-204ENST00000393824 SPINK1P00995 79 aa6.13□□□□□ -1.43
CUX1-204ENST00000393824 TYMSOSQ8TAI1 123 aa6.1□□□□□ -1.43
CUX1-204ENST00000393824 A0A1B0GU33 70 aa6.07□□□□□ -1.44
CUX1-204ENST00000393824 MT1HL1P0DM35 61 aa6.07□□□□□ -1.44
CUX1-204ENST00000393824 KRTAP10-8P60410 259 aa6.05□□□□□ -1.44
CUX1-204ENST00000393824 H1FX-AS1Q4G0G2 97 aa6.03□□□□□ -1.44
CUX1-204ENST00000393824 RPS29P62273 56 aaKnown RBP6.02□□□□□ -1.45
CUX1-204ENST00000393824 HERC1Q15751 4861 aa6.01□□□□□ -1.45
CUX1-204ENST00000393824 C20orf166-AS1Q96NR2 134 aa6□□□□□ -1.45
CUX1-204ENST00000393824 CRIPTQ9P021 101 aa6□□□□□ -1.45
CUX1-204ENST00000393824 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
CUX1-204ENST00000393824 SPINT4Q6UDR6 99 aa5.98□□□□□ -1.45
CUX1-204ENST00000393824 K7ERS5 55 aa5.97□□□□□ -1.45
CUX1-204ENST00000393824 KRTAP3-1Q9BYR8 98 aa5.94□□□□□ -1.46
CUX1-204ENST00000393824 LPAP08519 4548 aa5.94□□□□□ -1.46
CUX1-204ENST00000393824 KRTAP15-1Q3LI76 137 aa5.91□□□□□ -1.46
CUX1-204ENST00000393824 COX6B2Q6YFQ2 88 aa5.9□□□□□ -1.47
CUX1-204ENST00000393824 LRP2P98164 4655 aa5.86□□□□□ -1.47
CUX1-204ENST00000393824 J3QL48 77 aa5.86□□□□□ -1.47
CUX1-204ENST00000393824 RPL37P61927 97 aaKnown RBP5.82□□□□□ -1.48
CUX1-204ENST00000393824 C9orf92A6NGG3 77 aa5.82□□□□□ -1.48
CUX1-204ENST00000393824 TPRXLQ17RH7 258 aa5.82□□□□□ -1.48
CUX1-204ENST00000393824 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
CUX1-204ENST00000393824 KRTAP10-6P60371 365 aaPredicted RBP5.75□□□□□ -1.49
CUX1-204ENST00000393824 LUZP6Q538Z0 58 aa5.74□□□□□ -1.49
CUX1-204ENST00000393824 MUC2Q02817 5179 aa5.73□□□□□ -1.49
CUX1-204ENST00000393824 KRTAP13-4Q3LI77 160 aa5.71□□□□□ -1.49
CUX1-204ENST00000393824 C10orf95Q9H7T3 257 aa5.69□□□□□ -1.5
CUX1-204ENST00000393824 UBR4Q5T4S7 5183 aa5.69□□□□□ -1.5
CUX1-204ENST00000393824 XP32Q5T750 250 aa5.69□□□□□ -1.5
CUX1-204ENST00000393824 KRTAP3-2Q9BYR7 98 aa5.68□□□□□ -1.5
CUX1-204ENST00000393824 KRTAP3-3Q9BYR6 98 aa5.67□□□□□ -1.5
CUX1-204ENST00000393824 A0A0D9SG42 100 aa5.66□□□□□ -1.5
CUX1-204ENST00000393824 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
CUX1-204ENST00000393824 S4R3F8 94 aa5.61□□□□□ -1.51
CUX1-204ENST00000393824 KRTAP12-2P59991 146 aa5.56□□□□□ -1.52
CUX1-204ENST00000393824 MUC17Q685J3 4493 aa5.53□□□□□ -1.52
CUX1-204ENST00000393824 KRTAP4-1Q9BYQ7 146 aa5.52□□□□□ -1.53
CUX1-204ENST00000393824 KRTAP12-1P59990 96 aa5.52□□□□□ -1.53
CUX1-204ENST00000393824 SEC61BP60468 96 aaKnown RBP5.52□□□□□ -1.53
CUX1-204ENST00000393824 FAT4Q6V0I7 4981 aa5.47□□□□□ -1.53
CUX1-204ENST00000393824 M0QZ58 72 aa5.41□□□□□ -1.54
CUX1-204ENST00000393824 PLAC4Q8WY50 150 aa5.35□□□□□ -1.55
CUX1-204ENST00000393824 KRTAP19-2Q3LHN2 52 aa5.33□□□□□ -1.56
CUX1-204ENST00000393824 FLGP20930 4061 aaPredicted RBP5.27□□□□□ -1.57
CUX1-204ENST00000393824 LCE2CQ5TA81 110 aa5.25□□□□□ -1.57
CUX1-204ENST00000393824 CAMK2N1Q7Z7J9 78 aa5.18□□□□□ -1.58
CUX1-204ENST00000393824 R4GN34 69 aa5.15□□□□□ -1.58
CUX1-204ENST00000393824 PP632Q6XCG6 107 aa5.13□□□□□ -1.59
CUX1-204ENST00000393824 MT1HP80294 61 aa5.12□□□□□ -1.59
CUX1-204ENST00000393824 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
CUX1-204ENST00000393824 LORP23490 312 aaPredicted RBP5.01□□□□□ -1.61
CUX1-204ENST00000393824 LCE2AQ5TA79 106 aaPredicted RBP5□□□□□ -1.61
CUX1-204ENST00000393824 M0R2T5 61 aa5□□□□□ -1.61
CUX1-204ENST00000393824 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
CUX1-204ENST00000393824 KRTAP9-8Q9BYQ0 159 aa4.92□□□□□ -1.62
CUX1-204ENST00000393824 KRTAP23-1A1A580 65 aa4.91□□□□□ -1.62
CUX1-204ENST00000393824 MT2AP02795 61 aa4.89□□□□□ -1.63
CUX1-204ENST00000393824 MT1FP04733 61 aa4.89□□□□□ -1.63
CUX1-204ENST00000393824 INE1O15225 51 aa4.82□□□□□ -1.64
CUX1-204ENST00000393824 TNP1P09430 55 aa4.82□□□□□ -1.64
CUX1-204ENST00000393824 KRTAP10-10P60014 251 aa4.8□□□□□ -1.64
CUX1-204ENST00000393824 USH2AO75445 5202 aa4.8□□□□□ -1.64
CUX1-204ENST00000393824 FSIP2Q5CZC0 6907 aa4.76□□□□□ -1.65
CUX1-204ENST00000393824 KRTAP19-1Q8IUB9 90 aa4.75□□□□□ -1.65
CUX1-204ENST00000393824 KRTAP9-3Q9BYQ3 159 aa4.74□□□□□ -1.65
CUX1-204ENST00000393824 SPRR2GQ9BYE4 73 aa4.68□□□□□ -1.66
CUX1-204ENST00000393824 LCE2BO14633 110 aa4.67□□□□□ -1.66
CUX1-204ENST00000393824 KRTAP9-2Q9BYQ4 174 aa4.6□□□□□ -1.67
CUX1-204ENST00000393824 MT1BP07438 61 aa4.58□□□□□ -1.68
CUX1-204ENST00000393824 LCE2DQ5TA82 110 aaPredicted RBP4.58□□□□□ -1.68
CUX1-204ENST00000393824 SSPOA2VEC9 5147 aa4.57□□□□□ -1.68
CUX1-204ENST00000393824 KRTAP19-8Q3LI54 63 aa4.56□□□□□ -1.68
CUX1-204ENST00000393824 LCE3AQ5TA76 89 aa4.5□□□□□ -1.69
CUX1-204ENST00000393824 KRTAP9-6A0A140TA67 174 aa4.44□□□□□ -1.7
CUX1-204ENST00000393824 KRTAP8-1Q8IUC2 63 aa4.44□□□□□ -1.7
CUX1-204ENST00000393824 MT1XP80297 61 aa4.41□□□□□ -1.7
CUX1-204ENST00000393824 KRTAP10-5P60370 271 aa4.4□□□□□ -1.71
CUX1-204ENST00000393824 FCGBPQ9Y6R7 5405 aaPredicted RBP4.38□□□□□ -1.71
CUX1-204ENST00000393824 KMT2DO14686 5537 aa4.37□□□□□ -1.71
CUX1-204ENST00000393824 CRCT1Q9UGL9 99 aa4.37□□□□□ -1.71
CUX1-204ENST00000393824 KRTAP19-6Q3LI70 58 aa4.32□□□□□ -1.72
CUX1-204ENST00000393824 KRTAP10-12P60413 245 aa4.3□□□□□ -1.72
CUX1-204ENST00000393824 KRTAP12-3P60328 96 aa4.28□□□□□ -1.72
CUX1-204ENST00000393824 KRTAP10-7P60409 375 aaPredicted RBP4.26□□□□□ -1.73
CUX1-204ENST00000393824 MACF1Q9UPN3 7388 aaKnown RBP4.21□□□□□ -1.74
CUX1-204ENST00000393824 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
CUX1-204ENST00000393824 KRTAP4-8A0A0G2JLE6 195 aa4.17□□□□□ -1.74
CUX1-204ENST00000393824 KRTAP4-8Q9BYQ9 185 aa4.17□□□□□ -1.74
CUX1-204ENST00000393824 LCE3CQ5T5A8 94 aa4.06□□□□□ -1.76
CUX1-204ENST00000393824 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.06□□□□□ -1.76
CUX1-204ENST00000393824 MUC12Q9UKN1 5478 aa4.04□□□□□ -1.76
CUX1-204ENST00000393824 KRTAP9-7A8MTY7 169 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms