RNA–Protein interactions for RNA: ENST00000381020.7

CDX2-201, Transcript of caudal type homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX2, Length 4,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-201ENST00000381020 VPS13BQ7Z7G8 4022 aa6.43□□□□□ -1.38
CDX2-201ENST00000381020 TPRXLQ17RH7 258 aa6.42□□□□□ -1.38
CDX2-201ENST00000381020 H0YAA0 97 aa6.39□□□□□ -1.39
CDX2-201ENST00000381020 MT1HL1P0DM35 61 aa6.38□□□□□ -1.39
CDX2-201ENST00000381020 KRTAP4-5Q9BYR2 181 aa6.37□□□□□ -1.39
CDX2-201ENST00000381020 PKHD1P08F94 4074 aa6.36□□□□□ -1.39
CDX2-201ENST00000381020 KIAA1109Q2LD37 5005 aa6.36□□□□□ -1.39
CDX2-201ENST00000381020 CAMK2N1Q7Z7J9 78 aa6.35□□□□□ -1.39
CDX2-201ENST00000381020 SACSQ9NZJ4 4579 aa6.34□□□□□ -1.39
CDX2-201ENST00000381020 MYCBP2O75592 4640 aa6.34□□□□□ -1.39
CDX2-201ENST00000381020 ROMO1P60602 79 aa6.34□□□□□ -1.4
CDX2-201ENST00000381020 P0C880 135 aa6.33□□□□□ -1.4
CDX2-201ENST00000381020 LRP1Q07954 4544 aaKnown RBP6.28□□□□□ -1.4
CDX2-201ENST00000381020 FAT2Q9NYQ8 4349 aa6.28□□□□□ -1.4
CDX2-201ENST00000381020 APOBP04114 4563 aaKnown RBP6.28□□□□□ -1.4
CDX2-201ENST00000381020 RYR1P21817 5038 aa6.28□□□□□ -1.4
CDX2-201ENST00000381020 KMT2CQ8NEZ4 4911 aaKnown RBP6.26□□□□□ -1.41
CDX2-201ENST00000381020 RYR3Q15413 4870 aa6.25□□□□□ -1.41
CDX2-201ENST00000381020 KRTAP25-1Q3LHN0 102 aa6.21□□□□□ -1.41
CDX2-201ENST00000381020 FAT3Q8TDW7 4589 aa6.19□□□□□ -1.42
CDX2-201ENST00000381020 RYR2Q92736 4967 aa6.18□□□□□ -1.42
CDX2-201ENST00000381020 C10orf95Q9H7T3 257 aa6.18□□□□□ -1.42
CDX2-201ENST00000381020 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.43
CDX2-201ENST00000381020 PKD1P98161 4303 aa6.14□□□□□ -1.43
CDX2-201ENST00000381020 NDUFAF8A1L188 74 aa6.12□□□□□ -1.43
CDX2-201ENST00000381020 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
CDX2-201ENST00000381020 KRTAP3-3Q9BYR6 98 aa6.11□□□□□ -1.43
CDX2-201ENST00000381020 KRTAP13-4Q3LI77 160 aa6.1□□□□□ -1.43
CDX2-201ENST00000381020 LUZP6Q538Z0 58 aa6.09□□□□□ -1.43
CDX2-201ENST00000381020 KRTAP12-2P59991 146 aa6.02□□□□□ -1.45
CDX2-201ENST00000381020 KRTAP3-2Q9BYR7 98 aa6□□□□□ -1.45
CDX2-201ENST00000381020 PLAC4Q8WY50 150 aa5.98□□□□□ -1.45
CDX2-201ENST00000381020 HSPG2P98160 4391 aa5.96□□□□□ -1.46
CDX2-201ENST00000381020 KRTAP12-1P59990 96 aa5.94□□□□□ -1.46
CDX2-201ENST00000381020 LRP2P98164 4655 aa5.93□□□□□ -1.46
CDX2-201ENST00000381020 KRTAP10-10P60014 251 aa5.88□□□□□ -1.47
CDX2-201ENST00000381020 HERC2O95714 4834 aa5.87□□□□□ -1.47
CDX2-201ENST00000381020 EPPK1P58107 5090 aaKnown RBP5.86□□□□□ -1.47
CDX2-201ENST00000381020 KRTAP4-1Q9BYQ7 146 aa5.85□□□□□ -1.47
CDX2-201ENST00000381020 TNP1P09430 55 aa5.79□□□□□ -1.48
CDX2-201ENST00000381020 LORP23490 312 aaPredicted RBP5.78□□□□□ -1.48
CDX2-201ENST00000381020 A0A0A0MQY5 61 aa5.77□□□□□ -1.49
CDX2-201ENST00000381020 LPAP08519 4548 aa5.76□□□□□ -1.49
CDX2-201ENST00000381020 PKHD1L1Q86WI1 4243 aa5.75□□□□□ -1.49
CDX2-201ENST00000381020 TNXBP22105 4242 aa5.69□□□□□ -1.5
CDX2-201ENST00000381020 ABCA13Q86UQ4 5058 aa5.66□□□□□ -1.5
CDX2-201ENST00000381020 PP632Q6XCG6 107 aa5.59□□□□□ -1.51
CDX2-201ENST00000381020 BIRC6Q9NR09 4857 aa5.59□□□□□ -1.52
CDX2-201ENST00000381020 MUC2Q02817 5179 aa5.53□□□□□ -1.52
CDX2-201ENST00000381020 HERC1Q15751 4861 aa5.47□□□□□ -1.53
CDX2-201ENST00000381020 MT1HP80294 61 aa5.4□□□□□ -1.54
CDX2-201ENST00000381020 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
CDX2-201ENST00000381020 RNF213Q63HN8 5207 aa5.37□□□□□ -1.55
CDX2-201ENST00000381020 PCLOQ9Y6V0 5065 aa5.36□□□□□ -1.55
CDX2-201ENST00000381020 FAT4Q6V0I7 4981 aa5.31□□□□□ -1.56
CDX2-201ENST00000381020 KRTAP15-1Q3LI76 137 aa5.31□□□□□ -1.56
CDX2-201ENST00000381020 MT2AP02795 61 aa5.31□□□□□ -1.56
CDX2-201ENST00000381020 MT1FP04733 61 aa5.29□□□□□ -1.56
CDX2-201ENST00000381020 KRTAP19-2Q3LHN2 52 aa5.26□□□□□ -1.57
CDX2-201ENST00000381020 LCE2CQ5TA81 110 aa5.24□□□□□ -1.57
CDX2-201ENST00000381020 UBR4Q5T4S7 5183 aa5.24□□□□□ -1.57
CDX2-201ENST00000381020 SPRR2GQ9BYE4 73 aa5.22□□□□□ -1.57
CDX2-201ENST00000381020 MUC17Q685J3 4493 aa5.21□□□□□ -1.57
CDX2-201ENST00000381020 LCE3AQ5TA76 89 aa5.18□□□□□ -1.58
CDX2-201ENST00000381020 KRTAP19-1Q8IUB9 90 aa5.18□□□□□ -1.58
CDX2-201ENST00000381020 HMCN2Q8NDA2 5059 aa5.16□□□□□ -1.58
CDX2-201ENST00000381020 FLGP20930 4061 aaPredicted RBP5.16□□□□□ -1.58
CDX2-201ENST00000381020 KRTAP10-12P60413 245 aa5.16□□□□□ -1.58
CDX2-201ENST00000381020 FSIP2Q5CZC0 6907 aa5.13□□□□□ -1.59
CDX2-201ENST00000381020 KRTAP9-8Q9BYQ0 159 aa5.08□□□□□ -1.6
CDX2-201ENST00000381020 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
CDX2-201ENST00000381020 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
CDX2-201ENST00000381020 MT1BP07438 61 aa4.94□□□□□ -1.62
CDX2-201ENST00000381020 KRTAP19-8Q3LI54 63 aa4.94□□□□□ -1.62
CDX2-201ENST00000381020 MT1XP80297 61 aa4.89□□□□□ -1.63
CDX2-201ENST00000381020 KRTAP9-3Q9BYQ3 159 aa4.89□□□□□ -1.63
CDX2-201ENST00000381020 KRTAP10-7P60409 375 aaPredicted RBP4.88□□□□□ -1.63
CDX2-201ENST00000381020 KRTAP10-5P60370 271 aa4.87□□□□□ -1.63
CDX2-201ENST00000381020 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
CDX2-201ENST00000381020 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
CDX2-201ENST00000381020 USH2AO75445 5202 aa4.78□□□□□ -1.64
CDX2-201ENST00000381020 LCE2BO14633 110 aa4.77□□□□□ -1.65
CDX2-201ENST00000381020 KRTAP19-5Q3LI72 72 aa4.77□□□□□ -1.65
CDX2-201ENST00000381020 CRCT1Q9UGL9 99 aa4.76□□□□□ -1.65
CDX2-201ENST00000381020 KRTAP4-8A0A0G2JLE6 195 aa4.72□□□□□ -1.65
CDX2-201ENST00000381020 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
CDX2-201ENST00000381020 SYNE1Q8NF91 8797 aaKnown RBP4.7□□□□□ -1.66
CDX2-201ENST00000381020 LCE2AQ5TA79 106 aaPredicted RBP4.62□□□□□ -1.67
CDX2-201ENST00000381020 KMT2DO14686 5537 aa4.61□□□□□ -1.67
CDX2-201ENST00000381020 LCE3CQ5T5A8 94 aa4.56□□□□□ -1.68
CDX2-201ENST00000381020 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
CDX2-201ENST00000381020 SPRR5A0A1B0GTR4 108 aa4.49□□□□□ -1.69
CDX2-201ENST00000381020 SPRR2FQ96RM1 72 aa4.48□□□□□ -1.69
CDX2-201ENST00000381020 KRTAP4-7Q9BYR0 210 aa4.44□□□□□ -1.7
CDX2-201ENST00000381020 INE1O15225 51 aa4.43□□□□□ -1.7
CDX2-201ENST00000381020 FCGBPQ9Y6R7 5405 aaPredicted RBP4.39□□□□□ -1.71
CDX2-201ENST00000381020 KRTAP19-6Q3LI70 58 aa4.29□□□□□ -1.72
CDX2-201ENST00000381020 MT1EP04732 61 aa4.29□□□□□ -1.72
CDX2-201ENST00000381020 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
CDX2-201ENST00000381020 MT1LQ93083 61 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms