RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 P0C880 135 aa5.84□□□□□ -1.47
SMAD9-202ENST00000379826 KRTAP10-10P60014 251 aa5.84□□□□□ -1.47
SMAD9-202ENST00000379826 NDUFAF8A1L188 74 aa5.83□□□□□ -1.48
SMAD9-202ENST00000379826 PRKDCP78527 4128 aaKnown RBP5.83□□□□□ -1.48
SMAD9-202ENST00000379826 DNAH5Q8TE73 4624 aa5.79□□□□□ -1.48
SMAD9-202ENST00000379826 KRTAP13-4Q3LI77 160 aa5.76□□□□□ -1.49
SMAD9-202ENST00000379826 VPS13BQ7Z7G8 4022 aa5.75□□□□□ -1.49
SMAD9-202ENST00000379826 KRTAP12-2P59991 146 aa5.75□□□□□ -1.49
SMAD9-202ENST00000379826 KRTAP10-8P60410 259 aa5.75□□□□□ -1.49
SMAD9-202ENST00000379826 LRP1BQ9NZR2 4599 aa5.74□□□□□ -1.49
SMAD9-202ENST00000379826 KRTAP10-6P60371 365 aaPredicted RBP5.69□□□□□ -1.5
SMAD9-202ENST00000379826 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
SMAD9-202ENST00000379826 PRO2289Q9P1D8 64 aa5.6□□□□□ -1.51
SMAD9-202ENST00000379826 KRTAP12-1P59990 96 aa5.6□□□□□ -1.51
SMAD9-202ENST00000379826 KRTAP10-4P60372 401 aaPredicted RBP5.59□□□□□ -1.51
SMAD9-202ENST00000379826 KRTAP3-2Q9BYR7 98 aa5.58□□□□□ -1.52
SMAD9-202ENST00000379826 HYDINQ4G0P3 5121 aa5.57□□□□□ -1.52
SMAD9-202ENST00000379826 SACSQ9NZJ4 4579 aa5.57□□□□□ -1.52
SMAD9-202ENST00000379826 KRTAP4-5Q9BYR2 181 aa5.57□□□□□ -1.52
SMAD9-202ENST00000379826 FAT1Q14517 4588 aa5.53□□□□□ -1.52
SMAD9-202ENST00000379826 FAT2Q9NYQ8 4349 aa5.53□□□□□ -1.52
SMAD9-202ENST00000379826 DYNC1H1Q14204 4646 aaKnown RBP5.53□□□□□ -1.52
SMAD9-202ENST00000379826 PKD1P98161 4303 aa5.51□□□□□ -1.53
SMAD9-202ENST00000379826 DNHD1Q96M86 4753 aa5.49□□□□□ -1.53
SMAD9-202ENST00000379826 PKHD1P08F94 4074 aa5.43□□□□□ -1.54
SMAD9-202ENST00000379826 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
SMAD9-202ENST00000379826 MT1HL1P0DM35 61 aa5.37□□□□□ -1.55
SMAD9-202ENST00000379826 TNP1P09430 55 aa5.36□□□□□ -1.55
SMAD9-202ENST00000379826 APOBP04114 4563 aaKnown RBP5.36□□□□□ -1.55
SMAD9-202ENST00000379826 PKHD1L1Q86WI1 4243 aa5.32□□□□□ -1.56
SMAD9-202ENST00000379826 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
SMAD9-202ENST00000379826 FAT3Q8TDW7 4589 aa5.3□□□□□ -1.56
SMAD9-202ENST00000379826 LRP1Q07954 4544 aaKnown RBP5.26□□□□□ -1.57
SMAD9-202ENST00000379826 MYCBP2O75592 4640 aa5.26□□□□□ -1.57
SMAD9-202ENST00000379826 LORP23490 312 aaPredicted RBP5.26□□□□□ -1.57
SMAD9-202ENST00000379826 TNXBP22105 4242 aa5.19□□□□□ -1.58
SMAD9-202ENST00000379826 HSPG2P98160 4391 aa5.15□□□□□ -1.59
SMAD9-202ENST00000379826 KRTAP17-1Q9BYP8 105 aa5.12□□□□□ -1.59
SMAD9-202ENST00000379826 RYR2Q92736 4967 aa5.11□□□□□ -1.59
SMAD9-202ENST00000379826 LPAP08519 4548 aa5.05□□□□□ -1.6
SMAD9-202ENST00000379826 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
SMAD9-202ENST00000379826 RYR1P21817 5038 aa5.05□□□□□ -1.6
SMAD9-202ENST00000379826 KMT2CQ8NEZ4 4911 aaKnown RBP5.03□□□□□ -1.6
SMAD9-202ENST00000379826 LRP2P98164 4655 aa4.96□□□□□ -1.62
SMAD9-202ENST00000379826 RYR3Q15413 4870 aa4.96□□□□□ -1.62
SMAD9-202ENST00000379826 KIAA1109Q2LD37 5005 aa4.9□□□□□ -1.62
SMAD9-202ENST00000379826 LCE3AQ5TA76 89 aa4.83□□□□□ -1.64
SMAD9-202ENST00000379826 KRTAP8-1Q8IUC2 63 aa4.77□□□□□ -1.65
SMAD9-202ENST00000379826 CRCT1Q9UGL9 99 aa4.75□□□□□ -1.65
SMAD9-202ENST00000379826 KRTAP23-1A1A580 65 aa4.72□□□□□ -1.65
SMAD9-202ENST00000379826 MT1HP80294 61 aa4.71□□□□□ -1.66
SMAD9-202ENST00000379826 ABCA13Q86UQ4 5058 aa4.68□□□□□ -1.66
SMAD9-202ENST00000379826 KRTAP10-12P60413 245 aa4.67□□□□□ -1.66
SMAD9-202ENST00000379826 BIRC6Q9NR09 4857 aa4.67□□□□□ -1.66
SMAD9-202ENST00000379826 EPPK1P58107 5090 aaKnown RBP4.67□□□□□ -1.66
SMAD9-202ENST00000379826 MUC17Q685J3 4493 aa4.65□□□□□ -1.66
SMAD9-202ENST00000379826 KRTAP12-3P60328 96 aa4.62□□□□□ -1.67
SMAD9-202ENST00000379826 SPRR2FQ96RM1 72 aa4.59□□□□□ -1.67
SMAD9-202ENST00000379826 SPRR2GQ9BYE4 73 aa4.58□□□□□ -1.68
SMAD9-202ENST00000379826 KRTAP9-2Q9BYQ4 174 aa4.58□□□□□ -1.68
SMAD9-202ENST00000379826 KRTAP9-6A0A140TA67 174 aa4.58□□□□□ -1.68
SMAD9-202ENST00000379826 MT1FP04733 61 aa4.55□□□□□ -1.68
SMAD9-202ENST00000379826 HERC2O95714 4834 aa4.54□□□□□ -1.68
SMAD9-202ENST00000379826 MT2AP02795 61 aa4.54□□□□□ -1.68
SMAD9-202ENST00000379826 KRTAP19-2Q3LHN2 52 aa4.53□□□□□ -1.68
SMAD9-202ENST00000379826 INE1O15225 51 aa4.52□□□□□ -1.69
SMAD9-202ENST00000379826 FLGP20930 4061 aaPredicted RBP4.52□□□□□ -1.69
SMAD9-202ENST00000379826 SPRR2EP22531 72 aa4.51□□□□□ -1.69
SMAD9-202ENST00000379826 SPRR2BP35325 72 aa4.51□□□□□ -1.69
SMAD9-202ENST00000379826 SPRR2AP35326 72 aa4.51□□□□□ -1.69
SMAD9-202ENST00000379826 KRTAP19-1Q8IUB9 90 aa4.49□□□□□ -1.69
SMAD9-202ENST00000379826 MUC2Q02817 5179 aa4.45□□□□□ -1.7
SMAD9-202ENST00000379826 HERC1Q15751 4861 aa4.42□□□□□ -1.7
SMAD9-202ENST00000379826 SPRR5A0A1B0GTR4 108 aa4.42□□□□□ -1.7
SMAD9-202ENST00000379826 LCE2CQ5TA81 110 aa4.4□□□□□ -1.7
SMAD9-202ENST00000379826 SPRR2DP22532 72 aa4.38□□□□□ -1.71
SMAD9-202ENST00000379826 KRTAP10-7P60409 375 aaPredicted RBP4.38□□□□□ -1.71
SMAD9-202ENST00000379826 MT1XP80297 61 aa4.34□□□□□ -1.72
SMAD9-202ENST00000379826 KRTAP10-5P60370 271 aa4.33□□□□□ -1.72
SMAD9-202ENST00000379826 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
SMAD9-202ENST00000379826 KRTAP9-8Q9BYQ0 159 aa4.3□□□□□ -1.72
SMAD9-202ENST00000379826 MT1BP07438 61 aa4.29□□□□□ -1.72
SMAD9-202ENST00000379826 KRTAP19-8Q3LI54 63 aa4.28□□□□□ -1.72
SMAD9-202ENST00000379826 PCLOQ9Y6V0 5065 aa4.24□□□□□ -1.73
SMAD9-202ENST00000379826 LCE3CQ5T5A8 94 aa4.24□□□□□ -1.73
SMAD9-202ENST00000379826 FAT4Q6V0I7 4981 aa4.23□□□□□ -1.73
SMAD9-202ENST00000379826 LCE2BO14633 110 aa4.21□□□□□ -1.74
SMAD9-202ENST00000379826 KRTAP9-7A8MTY7 169 aa4.2□□□□□ -1.74
SMAD9-202ENST00000379826 HMCN2Q8NDA2 5059 aa4.18□□□□□ -1.74
SMAD9-202ENST00000379826 LCE2DQ5TA82 110 aaPredicted RBP4.17□□□□□ -1.74
SMAD9-202ENST00000379826 KRTAP20-1Q3LI63 56 aa4.13□□□□□ -1.75
SMAD9-202ENST00000379826 RNF213Q63HN8 5207 aa4.13□□□□□ -1.75
SMAD9-202ENST00000379826 KRTAP9-3Q9BYQ3 159 aa4.13□□□□□ -1.75
SMAD9-202ENST00000379826 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
SMAD9-202ENST00000379826 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
SMAD9-202ENST00000379826 UBR4Q5T4S7 5183 aa4.06□□□□□ -1.76
SMAD9-202ENST00000379826 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
SMAD9-202ENST00000379826 KRTAP12-4P60329 112 aa3.98□□□□□ -1.77
SMAD9-202ENST00000379826 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.92□□□□□ -1.78
SMAD9-202ENST00000379826 LCE3BQ5TA77 95 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms