RNA–Protein interactions for RNA: ENST00000379599.6

NHLRC3-201, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,275 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-201ENST00000379599 DNAH11Q96DT5 4516 aa4.21□□□□□ -1.74
NHLRC3-201ENST00000379599 DNAH6Q9C0G6 4158 aa4.2□□□□□ -1.74
NHLRC3-201ENST00000379599 HYDINQ4G0P3 5121 aa4.2□□□□□ -1.74
NHLRC3-201ENST00000379599 HECTD4Q9Y4D8 3996 aa4.17□□□□□ -1.74
NHLRC3-201ENST00000379599 KRTAP10-2P60368 255 aa4.17□□□□□ -1.74
NHLRC3-201ENST00000379599 DYNC2H1Q8NCM8 4307 aaKnown RBP4.15□□□□□ -1.74
NHLRC3-201ENST00000379599 PRO2289Q9P1D8 64 aa4.13□□□□□ -1.75
NHLRC3-201ENST00000379599 M0QZ58 72 aa4.13□□□□□ -1.75
NHLRC3-201ENST00000379599 SMR3BP02814 79 aaPredicted RBP4.11□□□□□ -1.75
NHLRC3-201ENST00000379599 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
NHLRC3-201ENST00000379599 DNAH5Q8TE73 4624 aa4.1□□□□□ -1.75
NHLRC3-201ENST00000379599 LRP1BQ9NZR2 4599 aa4.1□□□□□ -1.75
NHLRC3-201ENST00000379599 PKHD1P08F94 4074 aa4.09□□□□□ -1.75
NHLRC3-201ENST00000379599 KRTAP10-1P60331 282 aa4.09□□□□□ -1.76
NHLRC3-201ENST00000379599 RPS29P62273 56 aaKnown RBP4.08□□□□□ -1.76
NHLRC3-201ENST00000379599 LCE2AQ5TA79 106 aaPredicted RBP4.07□□□□□ -1.76
NHLRC3-201ENST00000379599 KMT2CQ8NEZ4 4911 aaKnown RBP4.06□□□□□ -1.76
NHLRC3-201ENST00000379599 R4GN34 69 aa4.06□□□□□ -1.76
NHLRC3-201ENST00000379599 FAT1Q14517 4588 aa4.06□□□□□ -1.76
NHLRC3-201ENST00000379599 SACSQ9NZJ4 4579 aa4.05□□□□□ -1.76
NHLRC3-201ENST00000379599 FAT2Q9NYQ8 4349 aa4.04□□□□□ -1.76
NHLRC3-201ENST00000379599 PP632Q6XCG6 107 aa4.02□□□□□ -1.77
NHLRC3-201ENST00000379599 VPS13BQ7Z7G8 4022 aa4.02□□□□□ -1.77
NHLRC3-201ENST00000379599 DYNC1H1Q14204 4646 aaKnown RBP3.99□□□□□ -1.77
NHLRC3-201ENST00000379599 PKD1P98161 4303 aa3.98□□□□□ -1.77
NHLRC3-201ENST00000379599 LORP23490 312 aaPredicted RBP3.95□□□□□ -1.78
NHLRC3-201ENST00000379599 INE1O15225 51 aa3.92□□□□□ -1.78
NHLRC3-201ENST00000379599 KRTAP21-3Q3LHN1 58 aa3.92□□□□□ -1.78
NHLRC3-201ENST00000379599 RYR3Q15413 4870 aa3.92□□□□□ -1.78
NHLRC3-201ENST00000379599 APOBP04114 4563 aaKnown RBP3.91□□□□□ -1.78
NHLRC3-201ENST00000379599 RYR2Q92736 4967 aa3.91□□□□□ -1.78
NHLRC3-201ENST00000379599 LRP1Q07954 4544 aaKnown RBP3.89□□□□□ -1.79
NHLRC3-201ENST00000379599 MYCBP2O75592 4640 aa3.88□□□□□ -1.79
NHLRC3-201ENST00000379599 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
NHLRC3-201ENST00000379599 KIAA1109Q2LD37 5005 aa3.87□□□□□ -1.79
NHLRC3-201ENST00000379599 EPPK1P58107 5090 aaKnown RBP3.81□□□□□ -1.8
NHLRC3-201ENST00000379599 A0A1B0GVY2 172 aa3.81□□□□□ -1.8
NHLRC3-201ENST00000379599 FAT3Q8TDW7 4589 aa3.8□□□□□ -1.8
NHLRC3-201ENST00000379599 Q5VSD8 79 aa3.78□□□□□ -1.8
NHLRC3-201ENST00000379599 RYR1P21817 5038 aa3.78□□□□□ -1.81
NHLRC3-201ENST00000379599 TNP1P09430 55 aa3.77□□□□□ -1.81
NHLRC3-201ENST00000379599 HSPG2P98160 4391 aa3.76□□□□□ -1.81
NHLRC3-201ENST00000379599 KRTAP17-1Q9BYP8 105 aa3.74□□□□□ -1.81
NHLRC3-201ENST00000379599 PKHD1L1Q86WI1 4243 aa3.72□□□□□ -1.81
NHLRC3-201ENST00000379599 KRTAP10-4P60372 401 aaPredicted RBP3.71□□□□□ -1.82
NHLRC3-201ENST00000379599 KRTAP4-5Q9BYR2 181 aa3.66□□□□□ -1.82
NHLRC3-201ENST00000379599 LPAP08519 4548 aa3.64□□□□□ -1.83
NHLRC3-201ENST00000379599 ABCA13Q86UQ4 5058 aa3.64□□□□□ -1.83
NHLRC3-201ENST00000379599 KRTAP23-1A1A580 65 aa3.64□□□□□ -1.83
NHLRC3-201ENST00000379599 TNXBP22105 4242 aa3.64□□□□□ -1.83
NHLRC3-201ENST00000379599 LRP2P98164 4655 aa3.63□□□□□ -1.83
NHLRC3-201ENST00000379599 HERC2O95714 4834 aa3.6□□□□□ -1.83
NHLRC3-201ENST00000379599 LOC100996750A0A140TA64 210 aa3.57□□□□□ -1.84
NHLRC3-201ENST00000379599 KRTAP4-6Q9BYQ5 205 aa3.57□□□□□ -1.84
NHLRC3-201ENST00000379599 MT1HL1P0DM35 61 aa3.55□□□□□ -1.84
NHLRC3-201ENST00000379599 MUC2Q02817 5179 aa3.55□□□□□ -1.84
NHLRC3-201ENST00000379599 HERC1Q15751 4861 aa3.53□□□□□ -1.84
NHLRC3-201ENST00000379599 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
NHLRC3-201ENST00000379599 PCLOQ9Y6V0 5065 aa3.44□□□□□ -1.86
NHLRC3-201ENST00000379599 BIRC6Q9NR09 4857 aa3.44□□□□□ -1.86
NHLRC3-201ENST00000379599 RNF213Q63HN8 5207 aa3.42□□□□□ -1.86
NHLRC3-201ENST00000379599 KRTAP10-10P60014 251 aa3.39□□□□□ -1.87
NHLRC3-201ENST00000379599 FAT4Q6V0I7 4981 aa3.37□□□□□ -1.87
NHLRC3-201ENST00000379599 UBR4Q5T4S7 5183 aa3.36□□□□□ -1.87
NHLRC3-201ENST00000379599 KRTAP4-1Q9BYQ7 146 aa3.34□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP4-8Q9BYQ9 185 aa3.31□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP8-1Q8IUC2 63 aa3.31□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.3□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP10-12P60413 245 aa3.29□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP9-2Q9BYQ4 174 aa3.29□□□□□ -1.88
NHLRC3-201ENST00000379599 HMCN2Q8NDA2 5059 aa3.28□□□□□ -1.88
NHLRC3-201ENST00000379599 KRTAP9-6A0A140TA67 174 aa3.27□□□□□ -1.89
NHLRC3-201ENST00000379599 MUC17Q685J3 4493 aa3.27□□□□□ -1.89
NHLRC3-201ENST00000379599 M0R2T5 61 aa3.23□□□□□ -1.89
NHLRC3-201ENST00000379599 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
NHLRC3-201ENST00000379599 KRTAP19-1Q8IUB9 90 aa3.2□□□□□ -1.9
NHLRC3-201ENST00000379599 KRTAP19-2Q3LHN2 52 aa3.17□□□□□ -1.9
NHLRC3-201ENST00000379599 FLGP20930 4061 aaPredicted RBP3.17□□□□□ -1.9
NHLRC3-201ENST00000379599 LCE3BQ5TA77 95 aa3.17□□□□□ -1.9
NHLRC3-201ENST00000379599 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
NHLRC3-201ENST00000379599 KRTAP9-4Q9BYQ2 154 aa3.13□□□□□ -1.91
NHLRC3-201ENST00000379599 KRTAP10-5P60370 271 aa3.12□□□□□ -1.91
NHLRC3-201ENST00000379599 SPRR2GQ9BYE4 73 aa3.11□□□□□ -1.91
NHLRC3-201ENST00000379599 LCE3CQ5T5A8 94 aa3.1□□□□□ -1.91
NHLRC3-201ENST00000379599 KRTAP2-3P0C7H8 128 aa3.05□□□□□ -1.92
NHLRC3-201ENST00000379599 KRTAP2-4Q9BYR9 128 aa3.05□□□□□ -1.92
NHLRC3-201ENST00000379599 KRTAP2-1Q9BYU5 128 aa3.05□□□□□ -1.92
NHLRC3-201ENST00000379599 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
NHLRC3-201ENST00000379599 LCE4AQ5TA78 99 aa3.04□□□□□ -1.92
NHLRC3-201ENST00000379599 FSIP2Q5CZC0 6907 aa3.03□□□□□ -1.92
NHLRC3-201ENST00000379599 KRTAP4-8A0A0G2JLE6 195 aa3.02□□□□□ -1.93
NHLRC3-201ENST00000379599 USH2AO75445 5202 aa3.01□□□□□ -1.93
NHLRC3-201ENST00000379599 KRTAP10-7P60409 375 aaPredicted RBP3□□□□□ -1.93
NHLRC3-201ENST00000379599 MT1HP80294 61 aa3□□□□□ -1.93
NHLRC3-201ENST00000379599 MT1XP80297 61 aa2.98□□□□□ -1.93
NHLRC3-201ENST00000379599 KRTAP19-5Q3LI72 72 aa2.98□□□□□ -1.93
NHLRC3-201ENST00000379599 KRTAP12-4P60329 112 aa2.96□□□□□ -1.94
NHLRC3-201ENST00000379599 LCE1DQ5T752 114 aa2.94□□□□□ -1.94
NHLRC3-201ENST00000379599 KRTAP9-7A8MTY7 169 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms