RNA–Protein interactions for RNA: ENST00000379361.4

PTCHD1-201, Transcript of patched domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD1, Length 13,714 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1-201ENST00000379361 CSMD3Q7Z407 3707 aa5.25□□□□□ -1.57
PTCHD1-201ENST00000379361 VPS13BQ7Z7G8 4022 aa5.25□□□□□ -1.57
PTCHD1-201ENST00000379361 VPS13DQ5THJ4 4388 aa5.19□□□□□ -1.58
PTCHD1-201ENST00000379361 DNAH10Q8IVF4 4471 aa5.17□□□□□ -1.58
PTCHD1-201ENST00000379361 CUBNO60494 3623 aa5.15□□□□□ -1.58
PTCHD1-201ENST00000379361 MUC3AQ02505 3323 aa5.12□□□□□ -1.59
PTCHD1-201ENST00000379361 ANK3Q12955 4377 aaKnown RBP5.1□□□□□ -1.59
PTCHD1-201ENST00000379361 KRTAP10-6P60371 365 aaPredicted RBP5.09□□□□□ -1.59
PTCHD1-201ENST00000379361 SVEP1Q4LDE5 3571 aa5.07□□□□□ -1.6
PTCHD1-201ENST00000379361 PKHD1P08F94 4074 aa5.05□□□□□ -1.6
PTCHD1-201ENST00000379361 KRTAP23-1A1A580 65 aa5.04□□□□□ -1.6
PTCHD1-201ENST00000379361 KRTAP12-3P60328 96 aa5.01□□□□□ -1.61
PTCHD1-201ENST00000379361 KRTAP3-1Q9BYR8 98 aa4.99□□□□□ -1.61
PTCHD1-201ENST00000379361 KRTAP8-1Q8IUC2 63 aa4.94□□□□□ -1.62
PTCHD1-201ENST00000379361 PKHD1L1Q86WI1 4243 aa4.93□□□□□ -1.62
PTCHD1-201ENST00000379361 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
PTCHD1-201ENST00000379361 DNAH11Q96DT5 4516 aa4.89□□□□□ -1.63
PTCHD1-201ENST00000379361 CSMD2Q7Z408 3487 aa4.89□□□□□ -1.63
PTCHD1-201ENST00000379361 DNAH17Q9UFH2 4485 aa4.83□□□□□ -1.64
PTCHD1-201ENST00000379361 LORP23490 312 aaPredicted RBP4.8□□□□□ -1.64
PTCHD1-201ENST00000379361 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
PTCHD1-201ENST00000379361 MT1HL1P0DM35 61 aa4.74□□□□□ -1.65
PTCHD1-201ENST00000379361 FAT2Q9NYQ8 4349 aa4.72□□□□□ -1.65
PTCHD1-201ENST00000379361 KRTAP3-2Q9BYR7 98 aa4.7□□□□□ -1.66
PTCHD1-201ENST00000379361 KRTAP3-3Q9BYR6 98 aa4.66□□□□□ -1.66
PTCHD1-201ENST00000379361 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
PTCHD1-201ENST00000379361 DYNC2H1Q8NCM8 4307 aaKnown RBP4.64□□□□□ -1.67
PTCHD1-201ENST00000379361 DNAH8Q96JB1 4490 aa4.63□□□□□ -1.67
PTCHD1-201ENST00000379361 SACSQ9NZJ4 4579 aa4.62□□□□□ -1.67
PTCHD1-201ENST00000379361 DNAH9Q9NYC9 4486 aa4.56□□□□□ -1.68
PTCHD1-201ENST00000379361 PLECQ15149 4684 aaKnown RBP4.55□□□□□ -1.68
PTCHD1-201ENST00000379361 KRTAP4-5Q9BYR2 181 aa4.55□□□□□ -1.68
PTCHD1-201ENST00000379361 SPRR2FQ96RM1 72 aa4.52□□□□□ -1.69
PTCHD1-201ENST00000379361 LRP1Q07954 4544 aaKnown RBP4.5□□□□□ -1.69
PTCHD1-201ENST00000379361 DYNC1H1Q14204 4646 aaKnown RBP4.48□□□□□ -1.69
PTCHD1-201ENST00000379361 PKD1P98161 4303 aa4.46□□□□□ -1.7
PTCHD1-201ENST00000379361 TNXBP22105 4242 aa4.45□□□□□ -1.7
PTCHD1-201ENST00000379361 KRTAP19-4Q3LI73 84 aa4.43□□□□□ -1.7
PTCHD1-201ENST00000379361 DNAH5Q8TE73 4624 aa4.42□□□□□ -1.7
PTCHD1-201ENST00000379361 KRTAP10-4P60372 401 aaPredicted RBP4.38□□□□□ -1.71
PTCHD1-201ENST00000379361 FAT3Q8TDW7 4589 aa4.37□□□□□ -1.71
PTCHD1-201ENST00000379361 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
PTCHD1-201ENST00000379361 KRTAP19-5Q3LI72 72 aa4.32□□□□□ -1.72
PTCHD1-201ENST00000379361 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 MT1HP80294 61 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 SPRR2EP22531 72 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 SPRR2BP35325 72 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 SPRR2AP35326 72 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 HSPG2P98160 4391 aa4.29□□□□□ -1.72
PTCHD1-201ENST00000379361 SPRR2GQ9BYE4 73 aa4.26□□□□□ -1.73
PTCHD1-201ENST00000379361 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
PTCHD1-201ENST00000379361 STARD9Q9P2P6 4700 aa4.19□□□□□ -1.74
PTCHD1-201ENST00000379361 SPRR2DP22532 72 aa4.19□□□□□ -1.74
PTCHD1-201ENST00000379361 LCE3BQ5TA77 95 aa4.16□□□□□ -1.74
PTCHD1-201ENST00000379361 LCE2BO14633 110 aa4.15□□□□□ -1.74
PTCHD1-201ENST00000379361 RYR1P21817 5038 aa4.14□□□□□ -1.75
PTCHD1-201ENST00000379361 MT2AP02795 61 aa4.13□□□□□ -1.75
PTCHD1-201ENST00000379361 FAT1Q14517 4588 aa4.1□□□□□ -1.75
PTCHD1-201ENST00000379361 LRP1BQ9NZR2 4599 aa4.09□□□□□ -1.75
PTCHD1-201ENST00000379361 KRTAP4-1Q9BYQ7 146 aa4.06□□□□□ -1.76
PTCHD1-201ENST00000379361 MT1FP04733 61 aa4.04□□□□□ -1.76
PTCHD1-201ENST00000379361 MYCBP2O75592 4640 aa4.02□□□□□ -1.77
PTCHD1-201ENST00000379361 RYR3Q15413 4870 aa3.99□□□□□ -1.77
PTCHD1-201ENST00000379361 LCE2CQ5TA81 110 aa3.97□□□□□ -1.77
PTCHD1-201ENST00000379361 MT1GP13640 62 aa3.92□□□□□ -1.78
PTCHD1-201ENST00000379361 LCE3DQ9BYE3 92 aa3.9□□□□□ -1.78
PTCHD1-201ENST00000379361 DNHD1Q96M86 4753 aa3.87□□□□□ -1.79
PTCHD1-201ENST00000379361 LCE2DQ5TA82 110 aaPredicted RBP3.86□□□□□ -1.79
PTCHD1-201ENST00000379361 PCLOQ9Y6V0 5065 aa3.85□□□□□ -1.79
PTCHD1-201ENST00000379361 BIRC6Q9NR09 4857 aa3.82□□□□□ -1.8
PTCHD1-201ENST00000379361 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
PTCHD1-201ENST00000379361 KRTAP19-8Q3LI54 63 aa3.81□□□□□ -1.8
PTCHD1-201ENST00000379361 MT1XP80297 61 aa3.77□□□□□ -1.81
PTCHD1-201ENST00000379361 KRTAP19-1Q8IUB9 90 aa3.7□□□□□ -1.82
PTCHD1-201ENST00000379361 MUC17Q685J3 4493 aa3.68□□□□□ -1.82
PTCHD1-201ENST00000379361 KRTAP19-3Q7Z4W3 81 aa3.67□□□□□ -1.82
PTCHD1-201ENST00000379361 MT4P47944 62 aa3.66□□□□□ -1.82
PTCHD1-201ENST00000379361 MT3P25713 68 aa3.65□□□□□ -1.82
PTCHD1-201ENST00000379361 HYDINQ4G0P3 5121 aa3.65□□□□□ -1.83
PTCHD1-201ENST00000379361 HERC2O95714 4834 aa3.62□□□□□ -1.83
PTCHD1-201ENST00000379361 RYR2Q92736 4967 aa3.61□□□□□ -1.83
PTCHD1-201ENST00000379361 LRP2P98164 4655 aa3.6□□□□□ -1.83
PTCHD1-201ENST00000379361 LCE1DQ5T752 114 aa3.59□□□□□ -1.83
PTCHD1-201ENST00000379361 SPRR5A0A1B0GTR4 108 aa3.59□□□□□ -1.84
PTCHD1-201ENST00000379361 MT1LQ93083 61 aa3.57□□□□□ -1.84
PTCHD1-201ENST00000379361 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
PTCHD1-201ENST00000379361 KRTAP4-8A0A0G2JLE6 195 aa3.56□□□□□ -1.84
PTCHD1-201ENST00000379361 KRTAP4-8Q9BYQ9 185 aa3.56□□□□□ -1.84
PTCHD1-201ENST00000379361 HMCN2Q8NDA2 5059 aa3.53□□□□□ -1.84
PTCHD1-201ENST00000379361 MT1BP07438 61 aa3.53□□□□□ -1.84
PTCHD1-201ENST00000379361 PRM1P04553 51 aa3.51□□□□□ -1.85
PTCHD1-201ENST00000379361 KRTAP9-8Q9BYQ0 159 aa3.5□□□□□ -1.85
PTCHD1-201ENST00000379361 KRTAP9-3Q9BYQ3 159 aa3.5□□□□□ -1.85
PTCHD1-201ENST00000379361 LPAP08519 4548 aa3.5□□□□□ -1.85
PTCHD1-201ENST00000379361 HERC1Q15751 4861 aa3.47□□□□□ -1.85
PTCHD1-201ENST00000379361 KMT2CQ8NEZ4 4911 aaKnown RBP3.45□□□□□ -1.86
PTCHD1-201ENST00000379361 EPPK1P58107 5090 aaKnown RBP3.42□□□□□ -1.86
PTCHD1-201ENST00000379361 MT1EP04732 61 aa3.41□□□□□ -1.86
PTCHD1-201ENST00000379361 KRTAP9-2Q9BYQ4 174 aa3.41□□□□□ -1.86
PTCHD1-201ENST00000379361 LCE5AQ5TCM9 118 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms