RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 KRTAP3-3Q9BYR6 98 aa8.18□□□□□ -1.1
CKAP4-201ENST00000378026 DYNC1H1Q14204 4646 aaKnown RBP8.15□□□□□ -1.11
CKAP4-201ENST00000378026 NDUFAF8A1L188 74 aa8.14□□□□□ -1.11
CKAP4-201ENST00000378026 KRTAP3-2Q9BYR7 98 aa8.14□□□□□ -1.11
CKAP4-201ENST00000378026 KRTAP10-8P60410 259 aa8.08□□□□□ -1.12
CKAP4-201ENST00000378026 S4R3F8 94 aa8.07□□□□□ -1.12
CKAP4-201ENST00000378026 PKHD1L1Q86WI1 4243 aa8.07□□□□□ -1.12
CKAP4-201ENST00000378026 KRTAP12-2P59991 146 aa8.07□□□□□ -1.12
CKAP4-201ENST00000378026 MYCBP2O75592 4640 aa8.04□□□□□ -1.12
CKAP4-201ENST00000378026 APOBP04114 4563 aaKnown RBP8.03□□□□□ -1.12
CKAP4-201ENST00000378026 HSPG2P98160 4391 aa8.02□□□□□ -1.13
CKAP4-201ENST00000378026 KRTAP15-1Q3LI76 137 aa8.02□□□□□ -1.13
CKAP4-201ENST00000378026 KRTAP10-4P60372 401 aaPredicted RBP7.99□□□□□ -1.13
CKAP4-201ENST00000378026 LRP1Q07954 4544 aaKnown RBP7.98□□□□□ -1.13
CKAP4-201ENST00000378026 FAT3Q8TDW7 4589 aa7.95□□□□□ -1.14
CKAP4-201ENST00000378026 KRTAP12-1P59990 96 aa7.92□□□□□ -1.14
CKAP4-201ENST00000378026 XP32Q5T750 250 aa7.87□□□□□ -1.15
CKAP4-201ENST00000378026 LPAP08519 4548 aa7.79□□□□□ -1.16
CKAP4-201ENST00000378026 A0A1B0GVY2 172 aa7.79□□□□□ -1.16
CKAP4-201ENST00000378026 TNXBP22105 4242 aa7.77□□□□□ -1.17
CKAP4-201ENST00000378026 M0QZ58 72 aa7.69□□□□□ -1.18
CKAP4-201ENST00000378026 KMT2CQ8NEZ4 4911 aaKnown RBP7.69□□□□□ -1.18
CKAP4-201ENST00000378026 LRP2P98164 4655 aa7.63□□□□□ -1.19
CKAP4-201ENST00000378026 Q5VSD8 79 aa7.63□□□□□ -1.19
CKAP4-201ENST00000378026 R4GN34 69 aa7.58□□□□□ -1.2
CKAP4-201ENST00000378026 PLAC4Q8WY50 150 aa7.55□□□□□ -1.2
CKAP4-201ENST00000378026 RYR2Q92736 4967 aa7.52□□□□□ -1.21
CKAP4-201ENST00000378026 LORP23490 312 aaPredicted RBP7.46□□□□□ -1.22
CKAP4-201ENST00000378026 KRTAP17-1Q9BYP8 105 aa7.45□□□□□ -1.22
CKAP4-201ENST00000378026 KIAA1109Q2LD37 5005 aa7.43□□□□□ -1.22
CKAP4-201ENST00000378026 RYR1P21817 5038 aa7.42□□□□□ -1.22
CKAP4-201ENST00000378026 MT1HL1P0DM35 61 aa7.4□□□□□ -1.22
CKAP4-201ENST00000378026 LUZP6Q538Z0 58 aa7.4□□□□□ -1.23
CKAP4-201ENST00000378026 A0A0A0MQY5 61 aa7.38□□□□□ -1.23
CKAP4-201ENST00000378026 RYR3Q15413 4870 aa7.34□□□□□ -1.24
CKAP4-201ENST00000378026 ABCA13Q86UQ4 5058 aa7.31□□□□□ -1.24
CKAP4-201ENST00000378026 CAMK2N1Q7Z7J9 78 aa7.29□□□□□ -1.24
CKAP4-201ENST00000378026 KRTAP21-3Q3LHN1 58 aa7.16□□□□□ -1.26
CKAP4-201ENST00000378026 PP632Q6XCG6 107 aa7.15□□□□□ -1.27
CKAP4-201ENST00000378026 MUC2Q02817 5179 aa7.11□□□□□ -1.27
CKAP4-201ENST00000378026 KRTAP4-1Q9BYQ7 146 aa7.11□□□□□ -1.27
CKAP4-201ENST00000378026 MUC17Q685J3 4493 aa7.11□□□□□ -1.27
CKAP4-201ENST00000378026 EPPK1P58107 5090 aaKnown RBP7.08□□□□□ -1.28
CKAP4-201ENST00000378026 SEC61BP60468 96 aaKnown RBP7.07□□□□□ -1.28
CKAP4-201ENST00000378026 KRTAP4-5Q9BYR2 181 aa6.98□□□□□ -1.29
CKAP4-201ENST00000378026 TNP1P09430 55 aa6.96□□□□□ -1.29
CKAP4-201ENST00000378026 KRTAP19-2Q3LHN2 52 aa6.88□□□□□ -1.31
CKAP4-201ENST00000378026 SPRR5A0A1B0GTR4 108 aa6.79□□□□□ -1.32
CKAP4-201ENST00000378026 J3QL48 77 aa6.78□□□□□ -1.32
CKAP4-201ENST00000378026 FAT4Q6V0I7 4981 aa6.72□□□□□ -1.33
CKAP4-201ENST00000378026 PCLOQ9Y6V0 5065 aa6.72□□□□□ -1.33
CKAP4-201ENST00000378026 FLGP20930 4061 aaPredicted RBP6.71□□□□□ -1.33
CKAP4-201ENST00000378026 HERC2O95714 4834 aa6.69□□□□□ -1.34
CKAP4-201ENST00000378026 KRTAP23-1A1A580 65 aa6.69□□□□□ -1.34
CKAP4-201ENST00000378026 LCE3AQ5TA76 89 aa6.6□□□□□ -1.35
CKAP4-201ENST00000378026 HERC1Q15751 4861 aa6.56□□□□□ -1.36
CKAP4-201ENST00000378026 RNF213Q63HN8 5207 aa6.48□□□□□ -1.37
CKAP4-201ENST00000378026 KRTAP19-1Q8IUB9 90 aa6.47□□□□□ -1.37
CKAP4-201ENST00000378026 M0R2T5 61 aa6.45□□□□□ -1.38
CKAP4-201ENST00000378026 PRO2289Q9P1D8 64 aa6.45□□□□□ -1.38
CKAP4-201ENST00000378026 BIRC6Q9NR09 4857 aa6.45□□□□□ -1.38
CKAP4-201ENST00000378026 SPRR2GQ9BYE4 73 aa6.44□□□□□ -1.38
CKAP4-201ENST00000378026 HMCN2Q8NDA2 5059 aa6.36□□□□□ -1.39
CKAP4-201ENST00000378026 LCE2CQ5TA81 110 aa6.34□□□□□ -1.39
CKAP4-201ENST00000378026 KRTAP10-10P60014 251 aa6.32□□□□□ -1.4
CKAP4-201ENST00000378026 INE1O15225 51 aa6.29□□□□□ -1.4
CKAP4-201ENST00000378026 KRTAP8-1Q8IUC2 63 aa6.28□□□□□ -1.4
CKAP4-201ENST00000378026 UBR4Q5T4S7 5183 aa6.24□□□□□ -1.41
CKAP4-201ENST00000378026 MT1FP04733 61 aa6.24□□□□□ -1.41
CKAP4-201ENST00000378026 KRTAP12-3P60328 96 aa6.23□□□□□ -1.41
CKAP4-201ENST00000378026 MT2AP02795 61 aa6.19□□□□□ -1.42
CKAP4-201ENST00000378026 MT1HP80294 61 aa6.17□□□□□ -1.42
CKAP4-201ENST00000378026 KRTAP10-12P60413 245 aa6.16□□□□□ -1.42
CKAP4-201ENST00000378026 KRTAP10-5P60370 271 aa6.15□□□□□ -1.43
CKAP4-201ENST00000378026 MT1XP80297 61 aa6.13□□□□□ -1.43
CKAP4-201ENST00000378026 KRTAP10-7P60409 375 aaPredicted RBP6.08□□□□□ -1.44
CKAP4-201ENST00000378026 KRTAP9-8Q9BYQ0 159 aa6.08□□□□□ -1.44
CKAP4-201ENST00000378026 MT1BP07438 61 aa6.07□□□□□ -1.44
CKAP4-201ENST00000378026 KRTAP19-8Q3LI54 63 aa6.05□□□□□ -1.44
CKAP4-201ENST00000378026 KMT2DO14686 5537 aa5.98□□□□□ -1.45
CKAP4-201ENST00000378026 USH2AO75445 5202 aa5.94□□□□□ -1.46
CKAP4-201ENST00000378026 KRTAP19-5Q3LI72 72 aa5.88□□□□□ -1.47
CKAP4-201ENST00000378026 LCE3CQ5T5A8 94 aa5.85□□□□□ -1.47
CKAP4-201ENST00000378026 KRTAP9-3Q9BYQ3 159 aa5.78□□□□□ -1.48
CKAP4-201ENST00000378026 KRTAP9-6A8MVA2 160 aa5.75□□□□□ -1.49
CKAP4-201ENST00000378026 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
CKAP4-201ENST00000378026 KRTAP4-8Q9BYQ9 185 aa5.7□□□□□ -1.5
CKAP4-201ENST00000378026 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
CKAP4-201ENST00000378026 LCE2BO14633 110 aa5.57□□□□□ -1.52
CKAP4-201ENST00000378026 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
CKAP4-201ENST00000378026 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
CKAP4-201ENST00000378026 KRTAP2-1Q9BYU5 128 aa5.54□□□□□ -1.52
CKAP4-201ENST00000378026 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
CKAP4-201ENST00000378026 FSIP2Q5CZC0 6907 aa5.43□□□□□ -1.54
CKAP4-201ENST00000378026 MT1LQ93083 61 aa5.32□□□□□ -1.56
CKAP4-201ENST00000378026 LOC100996750A0A140TA64 210 aa5.26□□□□□ -1.57
CKAP4-201ENST00000378026 MT1EP04732 61 aa5.25□□□□□ -1.57
CKAP4-201ENST00000378026 LCE2DQ5TA82 110 aaPredicted RBP5.24□□□□□ -1.57
CKAP4-201ENST00000378026 DSTQ03001 7570 aaKnown RBP5.2□□□□□ -1.58
CKAP4-201ENST00000378026 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms