RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 KRTAP13-3Q3SY46 172 aa5.33□□□□□ -1.56
RTN3-206ENST00000377819 PKD1P98161 4303 aa5.33□□□□□ -1.56
RTN3-206ENST00000377819 KRTAP13-4Q3LI77 160 aa5.33□□□□□ -1.56
RTN3-206ENST00000377819 PKD1L1Q8TDX9 2849 aa5.32□□□□□ -1.56
RTN3-206ENST00000377819 DNAH8Q96JB1 4490 aa5.31□□□□□ -1.56
RTN3-206ENST00000377819 FBN3Q75N90 2809 aa5.31□□□□□ -1.56
RTN3-206ENST00000377819 DNHD1Q96M86 4753 aa5.31□□□□□ -1.56
RTN3-206ENST00000377819 DNAH11Q96DT5 4516 aa5.29□□□□□ -1.56
RTN3-206ENST00000377819 FAT2Q9NYQ8 4349 aa5.27□□□□□ -1.57
RTN3-206ENST00000377819 TGP01266 2768 aa5.25□□□□□ -1.57
RTN3-206ENST00000377819 ALMS1Q8TCU4 4167 aa5.21□□□□□ -1.58
RTN3-206ENST00000377819 PKHD1L1Q86WI1 4243 aa5.21□□□□□ -1.58
RTN3-206ENST00000377819 PKHD1P08F94 4074 aa5.21□□□□□ -1.58
RTN3-206ENST00000377819 KMT2AQ03164 3969 aa5.2□□□□□ -1.58
RTN3-206ENST00000377819 INE1O15225 51 aa5.19□□□□□ -1.58
RTN3-206ENST00000377819 DNAH5Q8TE73 4624 aa5.17□□□□□ -1.58
RTN3-206ENST00000377819 HYDINQ4G0P3 5121 aa5.12□□□□□ -1.59
RTN3-206ENST00000377819 KRTAP12-1P59990 96 aa5.11□□□□□ -1.59
RTN3-206ENST00000377819 CRCT1Q9UGL9 99 aa5.11□□□□□ -1.59
RTN3-206ENST00000377819 MEGF8Q7Z7M0 2845 aa5.09□□□□□ -1.6
RTN3-206ENST00000377819 SACSQ9NZJ4 4579 aa5.06□□□□□ -1.6
RTN3-206ENST00000377819 VPS13BQ7Z7G8 4022 aa5□□□□□ -1.61
RTN3-206ENST00000377819 FAT3Q8TDW7 4589 aa4.96□□□□□ -1.62
RTN3-206ENST00000377819 APOBP04114 4563 aaKnown RBP4.93□□□□□ -1.62
RTN3-206ENST00000377819 RYR2Q92736 4967 aa4.92□□□□□ -1.62
RTN3-206ENST00000377819 KRTAP10-12P60413 245 aa4.91□□□□□ -1.62
RTN3-206ENST00000377819 DYNC1H1Q14204 4646 aaKnown RBP4.9□□□□□ -1.62
RTN3-206ENST00000377819 HSPG2P98160 4391 aa4.86□□□□□ -1.63
RTN3-206ENST00000377819 LRP1BQ9NZR2 4599 aa4.85□□□□□ -1.63
RTN3-206ENST00000377819 TNXBP22105 4242 aa4.83□□□□□ -1.64
RTN3-206ENST00000377819 KRTAP10-6P60371 365 aaPredicted RBP4.82□□□□□ -1.64
RTN3-206ENST00000377819 KMT2CQ8NEZ4 4911 aaKnown RBP4.8□□□□□ -1.64
RTN3-206ENST00000377819 KRTAP12-3P60328 96 aa4.8□□□□□ -1.64
RTN3-206ENST00000377819 KRTAP10-5P60370 271 aa4.79□□□□□ -1.64
RTN3-206ENST00000377819 RYR3Q15413 4870 aa4.77□□□□□ -1.65
RTN3-206ENST00000377819 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
RTN3-206ENST00000377819 FAT1Q14517 4588 aa4.67□□□□□ -1.66
RTN3-206ENST00000377819 KRTAP23-1A1A580 65 aa4.63□□□□□ -1.67
RTN3-206ENST00000377819 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
RTN3-206ENST00000377819 RYR1P21817 5038 aa4.57□□□□□ -1.68
RTN3-206ENST00000377819 KRTAP10-4P60372 401 aaPredicted RBP4.56□□□□□ -1.68
RTN3-206ENST00000377819 LCE3AQ5TA76 89 aa4.53□□□□□ -1.68
RTN3-206ENST00000377819 KRTAP10-7P60409 375 aaPredicted RBP4.51□□□□□ -1.69
RTN3-206ENST00000377819 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
RTN3-206ENST00000377819 EPPK1P58107 5090 aaKnown RBP4.49□□□□□ -1.69
RTN3-206ENST00000377819 KRTAP3-2Q9BYR7 98 aa4.46□□□□□ -1.7
RTN3-206ENST00000377819 KRTAP17-1Q9BYP8 105 aa4.44□□□□□ -1.7
RTN3-206ENST00000377819 LRP1Q07954 4544 aaKnown RBP4.44□□□□□ -1.7
RTN3-206ENST00000377819 MT1HL1P0DM35 61 aa4.42□□□□□ -1.7
RTN3-206ENST00000377819 MUC17Q685J3 4493 aa4.39□□□□□ -1.71
RTN3-206ENST00000377819 KRTAP3-3Q9BYR6 98 aa4.37□□□□□ -1.71
RTN3-206ENST00000377819 ABCA13Q86UQ4 5058 aa4.36□□□□□ -1.71
RTN3-206ENST00000377819 HERC2O95714 4834 aa4.34□□□□□ -1.71
RTN3-206ENST00000377819 MYCBP2O75592 4640 aa4.31□□□□□ -1.72
RTN3-206ENST00000377819 BIRC6Q9NR09 4857 aa4.3□□□□□ -1.72
RTN3-206ENST00000377819 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
RTN3-206ENST00000377819 SPRR2FQ96RM1 72 aa4.24□□□□□ -1.73
RTN3-206ENST00000377819 LPAP08519 4548 aa4.21□□□□□ -1.74
RTN3-206ENST00000377819 FLGP20930 4061 aaPredicted RBP4.17□□□□□ -1.74
RTN3-206ENST00000377819 KRTAP19-4Q3LI73 84 aa4.16□□□□□ -1.74
RTN3-206ENST00000377819 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.75
RTN3-206ENST00000377819 KRTAP4-5Q9BYR2 181 aa4.13□□□□□ -1.75
RTN3-206ENST00000377819 PCLOQ9Y6V0 5065 aa4.09□□□□□ -1.76
RTN3-206ENST00000377819 HMCN2Q8NDA2 5059 aa4.06□□□□□ -1.76
RTN3-206ENST00000377819 KRTAP19-2Q3LHN2 52 aa4.05□□□□□ -1.76
RTN3-206ENST00000377819 LRP2P98164 4655 aa4.04□□□□□ -1.76
RTN3-206ENST00000377819 KRTAP12-4P60329 112 aa4□□□□□ -1.77
RTN3-206ENST00000377819 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
RTN3-206ENST00000377819 KRTAP19-5Q3LI72 72 aa3.98□□□□□ -1.77
RTN3-206ENST00000377819 MT2AP02795 61 aa3.94□□□□□ -1.78
RTN3-206ENST00000377819 SPRR2EP22531 72 aa3.93□□□□□ -1.78
RTN3-206ENST00000377819 SPRR2BP35325 72 aa3.93□□□□□ -1.78
RTN3-206ENST00000377819 SPRR2AP35326 72 aa3.93□□□□□ -1.78
RTN3-206ENST00000377819 SPRR2GQ9BYE4 73 aa3.93□□□□□ -1.78
RTN3-206ENST00000377819 MT1HP80294 61 aa3.9□□□□□ -1.78
RTN3-206ENST00000377819 LCE3BQ5TA77 95 aa3.9□□□□□ -1.79
RTN3-206ENST00000377819 HERC1Q15751 4861 aa3.87□□□□□ -1.79
RTN3-206ENST00000377819 SPRR2DP22532 72 aa3.82□□□□□ -1.8
RTN3-206ENST00000377819 LCE2BO14633 110 aa3.81□□□□□ -1.8
RTN3-206ENST00000377819 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
RTN3-206ENST00000377819 MT1FP04733 61 aa3.78□□□□□ -1.8
RTN3-206ENST00000377819 LCE3EQ5T5B0 92 aa3.76□□□□□ -1.81
RTN3-206ENST00000377819 KRTAP4-1Q9BYQ7 146 aa3.74□□□□□ -1.81
RTN3-206ENST00000377819 MUC2Q02817 5179 aa3.74□□□□□ -1.81
RTN3-206ENST00000377819 LCE2CQ5TA81 110 aa3.71□□□□□ -1.81
RTN3-206ENST00000377819 MT1GP13640 62 aa3.7□□□□□ -1.82
RTN3-206ENST00000377819 RNF213Q63HN8 5207 aa3.68□□□□□ -1.82
RTN3-206ENST00000377819 OBSCNQ5VST9 7968 aa3.67□□□□□ -1.82
RTN3-206ENST00000377819 UBR4Q5T4S7 5183 aa3.63□□□□□ -1.83
RTN3-206ENST00000377819 LCE2DQ5TA82 110 aaPredicted RBP3.62□□□□□ -1.83
RTN3-206ENST00000377819 KRTAP19-8Q3LI54 63 aa3.58□□□□□ -1.84
RTN3-206ENST00000377819 MT3P25713 68 aa3.56□□□□□ -1.84
RTN3-206ENST00000377819 FAT4Q6V0I7 4981 aa3.54□□□□□ -1.84
RTN3-206ENST00000377819 SPRR5A0A1B0GTR4 108 aa3.52□□□□□ -1.85
RTN3-206ENST00000377819 LCE1BQ5T7P3 118 aa3.49□□□□□ -1.85
RTN3-206ENST00000377819 KRTAP19-1Q8IUB9 90 aa3.46□□□□□ -1.85
RTN3-206ENST00000377819 LCE2AQ5TA79 106 aaPredicted RBP3.43□□□□□ -1.86
RTN3-206ENST00000377819 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
RTN3-206ENST00000377819 MT1XP80297 61 aa3.42□□□□□ -1.86
RTN3-206ENST00000377819 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms