RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 LRP1Q07954 4544 aaKnown RBP7.51□□□□□ -1.21
MSH5-201ENST00000375703 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
MSH5-201ENST00000375703 K7ERS5 55 aa7.48□□□□□ -1.21
MSH5-201ENST00000375703 KRTAP25-1Q3LHN0 102 aa7.48□□□□□ -1.21
MSH5-201ENST00000375703 XP32Q5T750 250 aa7.48□□□□□ -1.21
MSH5-201ENST00000375703 KMT2CQ8NEZ4 4911 aaKnown RBP7.46□□□□□ -1.22
MSH5-201ENST00000375703 HSPG2P98160 4391 aa7.44□□□□□ -1.22
MSH5-201ENST00000375703 CRIPTQ9P021 101 aa7.44□□□□□ -1.22
MSH5-201ENST00000375703 P0C880 135 aa7.43□□□□□ -1.22
MSH5-201ENST00000375703 KRTAP10-6P60371 365 aaPredicted RBP7.43□□□□□ -1.22
MSH5-201ENST00000375703 S4R3F8 94 aa7.42□□□□□ -1.22
MSH5-201ENST00000375703 DMBT1Q9UGM3 2413 aaPredicted RBP7.4□□□□□ -1.22
MSH5-201ENST00000375703 KRTAP3-2Q9BYR7 98 aa7.38□□□□□ -1.23
MSH5-201ENST00000375703 KRTAP13-4Q3LI77 160 aa7.36□□□□□ -1.23
MSH5-201ENST00000375703 KRTAP17-1Q9BYP8 105 aa7.35□□□□□ -1.23
MSH5-201ENST00000375703 A0A0D9SG42 100 aa7.34□□□□□ -1.23
MSH5-201ENST00000375703 MYCBP2O75592 4640 aa7.33□□□□□ -1.24
MSH5-201ENST00000375703 MT1HL1P0DM35 61 aa7.31□□□□□ -1.24
MSH5-201ENST00000375703 RYR1P21817 5038 aa7.26□□□□□ -1.25
MSH5-201ENST00000375703 A0A0A0MQY5 61 aa7.2□□□□□ -1.26
MSH5-201ENST00000375703 NDUFAF8A1L188 74 aa7.2□□□□□ -1.26
MSH5-201ENST00000375703 RYR3Q15413 4870 aa7.19□□□□□ -1.26
MSH5-201ENST00000375703 SPINT4Q6UDR6 99 aa7.19□□□□□ -1.26
MSH5-201ENST00000375703 TPRXLQ17RH7 258 aa7.18□□□□□ -1.26
MSH5-201ENST00000375703 LPAP08519 4548 aa7.17□□□□□ -1.26
MSH5-201ENST00000375703 KIAA1109Q2LD37 5005 aa7.14□□□□□ -1.27
MSH5-201ENST00000375703 KRTAP12-2P59991 146 aa7.13□□□□□ -1.27
MSH5-201ENST00000375703 LRP2P98164 4655 aa7.11□□□□□ -1.27
MSH5-201ENST00000375703 KRTAP12-1P59990 96 aa7.08□□□□□ -1.28
MSH5-201ENST00000375703 M0QZ58 72 aa7.07□□□□□ -1.28
MSH5-201ENST00000375703 C10orf95Q9H7T3 257 aa7.04□□□□□ -1.28
MSH5-201ENST00000375703 KRTAP15-1Q3LI76 137 aa6.97□□□□□ -1.29
MSH5-201ENST00000375703 KRTAP4-5Q9BYR2 181 aa6.96□□□□□ -1.3
MSH5-201ENST00000375703 EPPK1P58107 5090 aaKnown RBP6.93□□□□□ -1.3
MSH5-201ENST00000375703 ABCA13Q86UQ4 5058 aa6.92□□□□□ -1.3
MSH5-201ENST00000375703 SEC61BP60468 96 aaKnown RBP6.92□□□□□ -1.3
MSH5-201ENST00000375703 R4GN34 69 aa6.9□□□□□ -1.3
MSH5-201ENST00000375703 MUC17Q685J3 4493 aa6.82□□□□□ -1.32
MSH5-201ENST00000375703 KRTAP4-1Q9BYQ7 146 aa6.82□□□□□ -1.32
MSH5-201ENST00000375703 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
MSH5-201ENST00000375703 J3QL48 77 aa6.78□□□□□ -1.32
MSH5-201ENST00000375703 LUZP6Q538Z0 58 aa6.77□□□□□ -1.33
MSH5-201ENST00000375703 KRTAP19-2Q3LHN2 52 aa6.69□□□□□ -1.34
MSH5-201ENST00000375703 HERC2O95714 4834 aa6.57□□□□□ -1.36
MSH5-201ENST00000375703 CAMK2N1Q7Z7J9 78 aa6.56□□□□□ -1.36
MSH5-201ENST00000375703 MUC2Q02817 5179 aa6.49□□□□□ -1.37
MSH5-201ENST00000375703 PLAC4Q8WY50 150 aa6.48□□□□□ -1.37
MSH5-201ENST00000375703 FLGP20930 4061 aaPredicted RBP6.45□□□□□ -1.38
MSH5-201ENST00000375703 PP632Q6XCG6 107 aa6.45□□□□□ -1.38
MSH5-201ENST00000375703 BIRC6Q9NR09 4857 aa6.41□□□□□ -1.38
MSH5-201ENST00000375703 TNP1P09430 55 aa6.32□□□□□ -1.4
MSH5-201ENST00000375703 HERC1Q15751 4861 aa6.28□□□□□ -1.4
MSH5-201ENST00000375703 PCLOQ9Y6V0 5065 aa6.28□□□□□ -1.4
MSH5-201ENST00000375703 LCE2CQ5TA81 110 aa6.27□□□□□ -1.41
MSH5-201ENST00000375703 KRTAP23-1A1A580 65 aa6.22□□□□□ -1.41
MSH5-201ENST00000375703 HMCN2Q8NDA2 5059 aa6.22□□□□□ -1.41
MSH5-201ENST00000375703 SPRR2GQ9BYE4 73 aa6.2□□□□□ -1.42
MSH5-201ENST00000375703 M0R2T5 61 aa6.19□□□□□ -1.42
MSH5-201ENST00000375703 KRTAP19-1Q8IUB9 90 aa6.16□□□□□ -1.42
MSH5-201ENST00000375703 FAT4Q6V0I7 4981 aa6.15□□□□□ -1.42
MSH5-201ENST00000375703 MT1HP80294 61 aa6.11□□□□□ -1.43
MSH5-201ENST00000375703 KRTAP10-10P60014 251 aa6.05□□□□□ -1.44
MSH5-201ENST00000375703 MT1FP04733 61 aa6.03□□□□□ -1.44
MSH5-201ENST00000375703 MT2AP02795 61 aa6.02□□□□□ -1.45
MSH5-201ENST00000375703 SPRR5A0A1B0GTR4 108 aa6□□□□□ -1.45
MSH5-201ENST00000375703 KRTAP9-8Q9BYQ0 159 aa5.98□□□□□ -1.45
MSH5-201ENST00000375703 LCE3AQ5TA76 89 aa5.96□□□□□ -1.46
MSH5-201ENST00000375703 RNF213Q63HN8 5207 aa5.96□□□□□ -1.46
MSH5-201ENST00000375703 KRTAP19-8Q3LI54 63 aa5.91□□□□□ -1.46
MSH5-201ENST00000375703 UBR4Q5T4S7 5183 aa5.91□□□□□ -1.46
MSH5-201ENST00000375703 MT1BP07438 61 aa5.83□□□□□ -1.48
MSH5-201ENST00000375703 KRTAP10-5P60370 271 aa5.82□□□□□ -1.48
MSH5-201ENST00000375703 MT1XP80297 61 aa5.81□□□□□ -1.48
MSH5-201ENST00000375703 KRTAP8-1Q8IUC2 63 aa5.81□□□□□ -1.48
MSH5-201ENST00000375703 PRO2289Q9P1D8 64 aa5.8□□□□□ -1.48
MSH5-201ENST00000375703 KRTAP9-3Q9BYQ3 159 aa5.73□□□□□ -1.49
MSH5-201ENST00000375703 KRTAP10-12P60413 245 aa5.71□□□□□ -1.5
MSH5-201ENST00000375703 KRTAP12-3P60328 96 aa5.68□□□□□ -1.5
MSH5-201ENST00000375703 KRTAP10-7P60409 375 aaPredicted RBP5.66□□□□□ -1.5
MSH5-201ENST00000375703 INE1O15225 51 aa5.53□□□□□ -1.52
MSH5-201ENST00000375703 LCE2BO14633 110 aa5.49□□□□□ -1.53
MSH5-201ENST00000375703 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
MSH5-201ENST00000375703 LCE3CQ5T5A8 94 aa5.35□□□□□ -1.55
MSH5-201ENST00000375703 LCE2AQ5TA79 106 aaPredicted RBP5.33□□□□□ -1.56
MSH5-201ENST00000375703 USH2AO75445 5202 aa5.31□□□□□ -1.56
MSH5-201ENST00000375703 KRTAP4-8A0A0G2JLE6 195 aa5.31□□□□□ -1.56
MSH5-201ENST00000375703 KRTAP4-8Q9BYQ9 185 aa5.31□□□□□ -1.56
MSH5-201ENST00000375703 KMT2DO14686 5537 aa5.27□□□□□ -1.57
MSH5-201ENST00000375703 KRTAP19-7Q3SYF9 63 aa5.17□□□□□ -1.58
MSH5-201ENST00000375703 KRTAP9-6A8MVA2 160 aa5.14□□□□□ -1.59
MSH5-201ENST00000375703 KRTAP4-7Q9BYR0 210 aa5.09□□□□□ -1.59
MSH5-201ENST00000375703 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
MSH5-201ENST00000375703 MT1LQ93083 61 aa5.03□□□□□ -1.6
MSH5-201ENST00000375703 MT1EP04732 61 aa5.02□□□□□ -1.61
MSH5-201ENST00000375703 KRTAP2-3P0C7H8 128 aa4.98□□□□□ -1.61
MSH5-201ENST00000375703 KRTAP2-4Q9BYR9 128 aa4.98□□□□□ -1.61
MSH5-201ENST00000375703 KRTAP2-1Q9BYU5 128 aa4.98□□□□□ -1.61
MSH5-201ENST00000375703 SSPOA2VEC9 5147 aa4.95□□□□□ -1.62
MSH5-201ENST00000375703 LCE2DQ5TA82 110 aaPredicted RBP4.95□□□□□ -1.62
MSH5-201ENST00000375703 KRTAP19-6Q3LI70 58 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms