RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 MUC2Q02817 5179 aa4.9□□□□□ -1.63
UBR4-201ENST00000375218 LY6G6CO95867 125 aa4.89□□□□□ -1.63
UBR4-201ENST00000375218 H3BNG1 76 aa4.88□□□□□ -1.63
UBR4-201ENST00000375218 LINC01556Q5JQF7 62 aa4.87□□□□□ -1.63
UBR4-201ENST00000375218 DSCR10P59022 87 aa4.86□□□□□ -1.63
UBR4-201ENST00000375218 PRLHP81277 87 aa4.84□□□□□ -1.64
UBR4-201ENST00000375218 PLAC4Q8WY50 150 aa4.83□□□□□ -1.64
UBR4-201ENST00000375218 HERC1Q15751 4861 aa4.83□□□□□ -1.64
UBR4-201ENST00000375218 GVQW2A0A096LPI5 108 aaPredicted RBP4.83□□□□□ -1.64
UBR4-201ENST00000375218 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
UBR4-201ENST00000375218 IGFL1Q6UW32 110 aa4.79□□□□□ -1.64
UBR4-201ENST00000375218 C10orf95Q9H7T3 257 aa4.79□□□□□ -1.64
UBR4-201ENST00000375218 KRTAP29-1A8MX34 341 aaPredicted RBP4.79□□□□□ -1.64
UBR4-201ENST00000375218 LRP2P98164 4655 aa4.77□□□□□ -1.65
UBR4-201ENST00000375218 HERC2O95714 4834 aa4.75□□□□□ -1.65
UBR4-201ENST00000375218 SPINK6Q6UWN8 80 aa4.75□□□□□ -1.65
UBR4-201ENST00000375218 KRTAP10-4P60372 401 aaPredicted RBP4.74□□□□□ -1.65
UBR4-201ENST00000375218 KRTAP10-2P60368 255 aa4.74□□□□□ -1.65
UBR4-201ENST00000375218 KRTAP13-1Q8IUC0 172 aa4.72□□□□□ -1.65
UBR4-201ENST00000375218 INE1O15225 51 aa4.71□□□□□ -1.66
UBR4-201ENST00000375218 SPRR1AP35321 89 aa4.71□□□□□ -1.66
UBR4-201ENST00000375218 TP53AIP1Q9HCN2 124 aa4.68□□□□□ -1.66
UBR4-201ENST00000375218 A0A1B0GVY2 172 aa4.67□□□□□ -1.66
UBR4-201ENST00000375218 MUC17Q685J3 4493 aa4.67□□□□□ -1.66
UBR4-201ENST00000375218 MRPL34Q9BQ48 92 aaKnown RBP4.67□□□□□ -1.66
UBR4-201ENST00000375218 H0YAA0 97 aa4.66□□□□□ -1.66
UBR4-201ENST00000375218 IGLV5-48A0A075B6I7 105 aa4.63□□□□□ -1.67
UBR4-201ENST00000375218 Q6ZSA8 131 aa4.63□□□□□ -1.67
UBR4-201ENST00000375218 BIRC6Q9NR09 4857 aa4.63□□□□□ -1.67
UBR4-201ENST00000375218 KRTAP10-1P60331 282 aa4.6□□□□□ -1.67
UBR4-201ENST00000375218 ANAPC11Q9NYG5 84 aa4.6□□□□□ -1.67
UBR4-201ENST00000375218 RNF213Q63HN8 5207 aa4.59□□□□□ -1.68
UBR4-201ENST00000375218 HMCN2Q8NDA2 5059 aa4.58□□□□□ -1.68
UBR4-201ENST00000375218 FLGP20930 4061 aaPredicted RBP4.57□□□□□ -1.68
UBR4-201ENST00000375218 FAT4Q6V0I7 4981 aa4.56□□□□□ -1.68
UBR4-201ENST00000375218 UBR4Q5T4S7 5183 aa4.55□□□□□ -1.68
UBR4-201ENST00000375218 PP632Q6XCG6 107 aa4.55□□□□□ -1.68
UBR4-201ENST00000375218 KRTAP1-4P0C5Y4 121 aa4.54□□□□□ -1.68
UBR4-201ENST00000375218 KRTAP4-5Q9BYR2 181 aa4.53□□□□□ -1.68
UBR4-201ENST00000375218 SPINK1P00995 79 aa4.49□□□□□ -1.69
UBR4-201ENST00000375218 KRTAP13-2Q52LG2 175 aa4.49□□□□□ -1.69
UBR4-201ENST00000375218 DMBT1Q9UGM3 2413 aaPredicted RBP4.46□□□□□ -1.69
UBR4-201ENST00000375218 XP32Q5T750 250 aa4.45□□□□□ -1.7
UBR4-201ENST00000375218 MMP24-AS1A0A0U1RRL7 71 aa4.44□□□□□ -1.7
UBR4-201ENST00000375218 H1FX-AS1Q4G0G2 97 aa4.44□□□□□ -1.7
UBR4-201ENST00000375218 RPL37P61927 97 aaKnown RBP4.44□□□□□ -1.7
UBR4-201ENST00000375218 SPRR1BP22528 89 aa4.43□□□□□ -1.7
UBR4-201ENST00000375218 SMR3BP02814 79 aaPredicted RBP4.39□□□□□ -1.71
UBR4-201ENST00000375218 KRTAP12-2P59991 146 aa4.39□□□□□ -1.71
UBR4-201ENST00000375218 MT1HL1P0DM35 61 aa4.34□□□□□ -1.72
UBR4-201ENST00000375218 COX6B2Q6YFQ2 88 aa4.34□□□□□ -1.72
UBR4-201ENST00000375218 KRTAP13-3Q3SY46 172 aa4.33□□□□□ -1.72
UBR4-201ENST00000375218 C9orf92A6NGG3 77 aa4.31□□□□□ -1.72
UBR4-201ENST00000375218 A0A0D9SG42 100 aa4.28□□□□□ -1.72
UBR4-201ENST00000375218 KRTAP19-2Q3LHN2 52 aa4.2□□□□□ -1.74
UBR4-201ENST00000375218 KRTAP13-4Q3LI77 160 aa4.15□□□□□ -1.75
UBR4-201ENST00000375218 LCE5AQ5TCM9 118 aa4.15□□□□□ -1.75
UBR4-201ENST00000375218 KRTAP4-1Q9BYQ7 146 aa4.15□□□□□ -1.75
UBR4-201ENST00000375218 S4R3F8 94 aa4.11□□□□□ -1.75
UBR4-201ENST00000375218 Q5VSD8 79 aa4.08□□□□□ -1.76
UBR4-201ENST00000375218 KRTAP10-6P60371 365 aaPredicted RBP4.05□□□□□ -1.76
UBR4-201ENST00000375218 USH2AO75445 5202 aa4.03□□□□□ -1.76
UBR4-201ENST00000375218 KRTAP12-1P59990 96 aa4.02□□□□□ -1.77
UBR4-201ENST00000375218 KRTAP2-2Q9BYT5 123 aa3.98□□□□□ -1.77
UBR4-201ENST00000375218 RPS29P62273 56 aaKnown RBP3.97□□□□□ -1.77
UBR4-201ENST00000375218 KRTAP9-4Q9BYQ2 154 aa3.97□□□□□ -1.77
UBR4-201ENST00000375218 KRTAP19-4Q3LI73 84 aa3.97□□□□□ -1.77
UBR4-201ENST00000375218 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
UBR4-201ENST00000375218 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
UBR4-201ENST00000375218 KRTAP9-6A0A140TA67 174 aa3.81□□□□□ -1.8
UBR4-201ENST00000375218 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
UBR4-201ENST00000375218 KMT2DO14686 5537 aa3.79□□□□□ -1.8
UBR4-201ENST00000375218 M0QZ58 72 aa3.78□□□□□ -1.8
UBR4-201ENST00000375218 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
UBR4-201ENST00000375218 KRTAP9-2Q9BYQ4 174 aa3.74□□□□□ -1.81
UBR4-201ENST00000375218 LCE4AQ5TA78 99 aa3.72□□□□□ -1.81
UBR4-201ENST00000375218 KRTAP9-9Q9BYP9 154 aa3.72□□□□□ -1.81
UBR4-201ENST00000375218 LCE1AQ5T7P2 110 aa3.71□□□□□ -1.82
UBR4-201ENST00000375218 KRTAP9-7A8MTY7 169 aa3.67□□□□□ -1.82
UBR4-201ENST00000375218 M0R2T5 61 aa3.67□□□□□ -1.82
UBR4-201ENST00000375218 SSPOA2VEC9 5147 aa3.66□□□□□ -1.82
UBR4-201ENST00000375218 KRTAP9-8Q9BYQ0 159 aa3.63□□□□□ -1.83
UBR4-201ENST00000375218 MT1HP80294 61 aa3.62□□□□□ -1.83
UBR4-201ENST00000375218 KRTAP10-10P60014 251 aa3.61□□□□□ -1.83
UBR4-201ENST00000375218 LOC100996750A0A140TA64 210 aa3.61□□□□□ -1.83
UBR4-201ENST00000375218 KRTAP4-6Q9BYQ5 205 aa3.61□□□□□ -1.83
UBR4-201ENST00000375218 FSIP2Q5CZC0 6907 aa3.59□□□□□ -1.83
UBR4-201ENST00000375218 MT3P25713 68 aa3.55□□□□□ -1.84
UBR4-201ENST00000375218 KRTAP19-1Q8IUB9 90 aa3.54□□□□□ -1.84
UBR4-201ENST00000375218 LCE1DQ5T752 114 aa3.54□□□□□ -1.84
UBR4-201ENST00000375218 MT1FP04733 61 aa3.53□□□□□ -1.85
UBR4-201ENST00000375218 LCE3EQ5T5B0 92 aa3.53□□□□□ -1.85
UBR4-201ENST00000375218 CRCT1Q9UGL9 99 aa3.5□□□□□ -1.85
UBR4-201ENST00000375218 KRTAP6-3Q3LI67 103 aa3.49□□□□□ -1.85
UBR4-201ENST00000375218 MT2AP02795 61 aa3.46□□□□□ -1.86
UBR4-201ENST00000375218 KRTAP9-3Q9BYQ3 159 aa3.45□□□□□ -1.86
UBR4-201ENST00000375218 TNP1P09430 55 aa3.42□□□□□ -1.86
UBR4-201ENST00000375218 FCGBPQ9Y6R7 5405 aaPredicted RBP3.42□□□□□ -1.86
UBR4-201ENST00000375218 MT1BP07438 61 aa3.38□□□□□ -1.87
UBR4-201ENST00000375218 KRTAP12-4P60329 112 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms