RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 HIST1H4AP62805 103 aaKnown RBP9.67□□□□□ -0.86
CCDC28B-201ENST00000373602 UQCRQO14949 82 aa9.66□□□□□ -0.86
CCDC28B-201ENST00000373602 H0Y9P7 68 aa9.62□□□□□ -0.87
CCDC28B-201ENST00000373602 ATOX1O00244 68 aa9.62□□□□□ -0.87
CCDC28B-201ENST00000373602 CRIPTQ9P021 101 aa9.58□□□□□ -0.88
CCDC28B-201ENST00000373602 KRTAP10-5P60370 271 aa9.56□□□□□ -0.88
CCDC28B-201ENST00000373602 IMUPQ9GZP8 106 aa9.56□□□□□ -0.88
CCDC28B-201ENST00000373602 LINC00643Q86TS7 51 aa9.55□□□□□ -0.88
CCDC28B-201ENST00000373602 NDUFC1O43677 76 aa9.53□□□□□ -0.88
CCDC28B-201ENST00000373602 H0YAA0 97 aa9.5□□□□□ -0.89
CCDC28B-201ENST00000373602 A8MUN3 132 aa9.49□□□□□ -0.89
CCDC28B-201ENST00000373602 LINC00208Q96KT6 92 aa9.46□□□□□ -0.9
CCDC28B-201ENST00000373602 OCR1Q9BZK8 76 aa9.42□□□□□ -0.9
CCDC28B-201ENST00000373602 MP68P56378 58 aa9.39□□□□□ -0.91
CCDC28B-201ENST00000373602 ADM2Q7Z4H4 148 aa9.37□□□□□ -0.91
CCDC28B-201ENST00000373602 A0A1B0GV90 55 aa9.36□□□□□ -0.91
CCDC28B-201ENST00000373602 NEBP20929 6669 aa9.29□□□□□ -0.92
CCDC28B-201ENST00000373602 H3BPC8 53 aa9.26□□□□□ -0.93
CCDC28B-201ENST00000373602 KRTAP5-9P26371 169 aa9.26□□□□□ -0.93
CCDC28B-201ENST00000373602 MUC12Q9UKN1 5478 aa9.24□□□□□ -0.93
CCDC28B-201ENST00000373602 J3QR89 54 aa9.21□□□□□ -0.94
CCDC28B-201ENST00000373602 DMAC1Q96GE9 116 aa9.19□□□□□ -0.94
CCDC28B-201ENST00000373602 SCGB1A1P11684 91 aa9.16□□□□□ -0.94
CCDC28B-201ENST00000373602 P0C880 135 aa9.15□□□□□ -0.94
CCDC28B-201ENST00000373602 PRO2289Q9P1D8 64 aa9.14□□□□□ -0.95
CCDC28B-201ENST00000373602 MT1XP80297 61 aa9.13□□□□□ -0.95
CCDC28B-201ENST00000373602 C20orf197Q8N268 126 aa9.13□□□□□ -0.95
CCDC28B-201ENST00000373602 PLAC4Q8WY50 150 aa9.13□□□□□ -0.95
CCDC28B-201ENST00000373602 R4GN34 69 aa9.13□□□□□ -0.95
CCDC28B-201ENST00000373602 KRTAP3-2Q9BYR7 98 aa9.07□□□□□ -0.96
CCDC28B-201ENST00000373602 KMT2DO14686 5537 aa9.06□□□□□ -0.96
CCDC28B-201ENST00000373602 M0QZ58 72 aa9.06□□□□□ -0.96
CCDC28B-201ENST00000373602 KRTAP20-1Q3LI63 56 aa9.04□□□□□ -0.96
CCDC28B-201ENST00000373602 TRAV7A0A075B6U4 112 aa8.99□□□□□ -0.97
CCDC28B-201ENST00000373602 ACYP2P14621 99 aa8.94□□□□□ -0.98
CCDC28B-201ENST00000373602 SPRR2FQ96RM1 72 aa8.94□□□□□ -0.98
CCDC28B-201ENST00000373602 KRTAP12-2P59991 146 aa8.93□□□□□ -0.98
CCDC28B-201ENST00000373602 MDN1Q9NU22 5596 aa8.92□□□□□ -0.98
CCDC28B-201ENST00000373602 LINC01554Q52M75 96 aa8.92□□□□□ -0.98
CCDC28B-201ENST00000373602 MT-ATP8P03928 68 aa8.91□□□□□ -0.98
CCDC28B-201ENST00000373602 SMIM20Q8N5G0 67 aa8.89□□□□□ -0.99
CCDC28B-201ENST00000373602 KRTAP8-1Q8IUC2 63 aa8.88□□□□□ -0.99
CCDC28B-201ENST00000373602 SPTSSBQ8NFR3 76 aa8.84□□□□□ -0.99
CCDC28B-201ENST00000373602 SPRR2EP22531 72 aa8.83□□□□□ -1
CCDC28B-201ENST00000373602 SPRR2BP35325 72 aa8.83□□□□□ -1
CCDC28B-201ENST00000373602 SPRR2AP35326 72 aa8.83□□□□□ -1
CCDC28B-201ENST00000373602 K7ERU9 68 aa8.81□□□□□ -1
CCDC28B-201ENST00000373602 KRTAP2-3P0C7H8 128 aa8.79□□□□□ -1
CCDC28B-201ENST00000373602 KRTAP2-4Q9BYR9 128 aa8.79□□□□□ -1
CCDC28B-201ENST00000373602 KRTAP4-8A0A0G2JLE6 195 aa8.76□□□□□ -1.01
CCDC28B-201ENST00000373602 KRTAP4-8Q9BYQ9 185 aa8.76□□□□□ -1.01
CCDC28B-201ENST00000373602 CHKB-CPT1BH3BT56 60 aa8.75□□□□□ -1.01
CCDC28B-201ENST00000373602 LCE1AQ5T7P2 110 aa8.72□□□□□ -1.01
CCDC28B-201ENST00000373602 SNURFQ9Y675 71 aa8.72□□□□□ -1.01
CCDC28B-201ENST00000373602 KRTAP10-7P60409 375 aaPredicted RBP8.71□□□□□ -1.02
CCDC28B-201ENST00000373602 KRTAP10-12P60413 245 aa8.67□□□□□ -1.02
CCDC28B-201ENST00000373602 SPANXA2-OT1Q8N9U9 137 aa8.64□□□□□ -1.03
CCDC28B-201ENST00000373602 SERP2Q8N6R1 65 aa8.55□□□□□ -1.04
CCDC28B-201ENST00000373602 SPRR2DP22532 72 aa8.54□□□□□ -1.04
CCDC28B-201ENST00000373602 KRTAP13-4Q3LI77 160 aa8.51□□□□□ -1.05
CCDC28B-201ENST00000373602 KRTAP2-2Q9BYT5 123 aa8.51□□□□□ -1.05
CCDC28B-201ENST00000373602 KRTAP2-1Q9BYU5 128 aa8.51□□□□□ -1.05
CCDC28B-201ENST00000373602 COA5Q86WW8 74 aa8.39□□□□□ -1.07
CCDC28B-201ENST00000373602 CAMK2N1Q7Z7J9 78 aa8.38□□□□□ -1.07
CCDC28B-201ENST00000373602 LCE3BQ5TA77 95 aa8.32□□□□□ -1.08
CCDC28B-201ENST00000373602 SEC61GP60059 68 aa8.28□□□□□ -1.08
CCDC28B-201ENST00000373602 SERP1Q9Y6X1 66 aa8.28□□□□□ -1.08
CCDC28B-201ENST00000373602 COX7CP15954 63 aa8.26□□□□□ -1.09
CCDC28B-201ENST00000373602 A0A0D9SG42 100 aa8.22□□□□□ -1.09
CCDC28B-201ENST00000373602 SPATA8Q6RVD6 105 aa8.19□□□□□ -1.1
CCDC28B-201ENST00000373602 H7BZZ5 65 aa8.17□□□□□ -1.1
CCDC28B-201ENST00000373602 KRTAP19-7Q3SYF9 63 aa8.17□□□□□ -1.1
CCDC28B-201ENST00000373602 A0A1B0GU33 70 aa8.16□□□□□ -1.1
CCDC28B-201ENST00000373602 CYSTM1Q9H1C7 97 aa8.15□□□□□ -1.1
CCDC28B-201ENST00000373602 SPINT4Q6UDR6 99 aa8.11□□□□□ -1.11
CCDC28B-201ENST00000373602 MT1EP04732 61 aa8.1□□□□□ -1.11
CCDC28B-201ENST00000373602 LCE5AQ5TCM9 118 aa8.09□□□□□ -1.11
CCDC28B-201ENST00000373602 KRTAP12-1P59990 96 aa8.07□□□□□ -1.12
CCDC28B-201ENST00000373602 KRTAP19-3Q7Z4W3 81 aa8.05□□□□□ -1.12
CCDC28B-201ENST00000373602 A0A1B0GU69 56 aa7.96□□□□□ -1.14
CCDC28B-201ENST00000373602 SMIM26A0A096LP01 95 aa7.93□□□□□ -1.14
CCDC28B-201ENST00000373602 KRTAP19-5Q3LI72 72 aa7.93□□□□□ -1.14
CCDC28B-201ENST00000373602 DSTQ03001 7570 aaKnown RBP7.88□□□□□ -1.15
CCDC28B-201ENST00000373602 ANAPC13Q9BS18 74 aa7.87□□□□□ -1.15
CCDC28B-201ENST00000373602 A8MU10 97 aa7.86□□□□□ -1.15
CCDC28B-201ENST00000373602 MT1GP13640 62 aa7.86□□□□□ -1.15
CCDC28B-201ENST00000373602 PP632Q6XCG6 107 aa7.77□□□□□ -1.17
CCDC28B-201ENST00000373602 CCDC179H3BU77 68 aa7.75□□□□□ -1.17
CCDC28B-201ENST00000373602 KRTAP4-9Q9BYQ8 210 aa7.75□□□□□ -1.17
CCDC28B-201ENST00000373602 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
CCDC28B-201ENST00000373602 MT1LQ93083 61 aa7.73□□□□□ -1.17
CCDC28B-201ENST00000373602 MT1MQ8N339 61 aa7.72□□□□□ -1.17
CCDC28B-201ENST00000373602 TNP1P09430 55 aa7.71□□□□□ -1.18
CCDC28B-201ENST00000373602 ATP5EP56381 51 aaPredicted RBP7.7□□□□□ -1.18
CCDC28B-201ENST00000373602 LCE3AQ5TA76 89 aa7.7□□□□□ -1.18
CCDC28B-201ENST00000373602 PRR15LQ9BU68 103 aa7.7□□□□□ -1.18
CCDC28B-201ENST00000373602 LINC01558Q9Y6Z2 57 aa7.62□□□□□ -1.19
CCDC28B-201ENST00000373602 LCE1DQ5T752 114 aa7.57□□□□□ -1.2
CCDC28B-201ENST00000373602 GPR98Q8WXG9 6306 aa7.56□□□□□ -1.2
CCDC28B-201ENST00000373602 LCE4AQ5TA78 99 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms