RNA–Protein interactions for RNA: ENST00000371146.5

USP1-202, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP1, Length 3,507 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-202ENST00000371146 UBR4Q5T4S7 5183 aa3.97□□□□□ -1.77
USP1-202ENST00000371146 IGLV5-48A0A075B6I7 105 aa3.97□□□□□ -1.77
USP1-202ENST00000371146 K7EQZ3 153 aa3.96□□□□□ -1.77
USP1-202ENST00000371146 LUZP6Q538Z0 58 aa3.96□□□□□ -1.77
USP1-202ENST00000371146 K7ERS5 55 aa3.95□□□□□ -1.78
USP1-202ENST00000371146 HRES1P13985 223 aa3.95□□□□□ -1.78
USP1-202ENST00000371146 PKD1P98161 4303 aa3.94□□□□□ -1.78
USP1-202ENST00000371146 HECTD4Q9Y4D8 3996 aa3.94□□□□□ -1.78
USP1-202ENST00000371146 FSIP2Q5CZC0 6907 aa3.94□□□□□ -1.78
USP1-202ENST00000371146 DMAC1Q96GE9 116 aa3.93□□□□□ -1.78
USP1-202ENST00000371146 A8MUU9 505 aa3.92□□□□□ -1.78
USP1-202ENST00000371146 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
USP1-202ENST00000371146 LINC00472Q9H8W2 130 aa3.89□□□□□ -1.79
USP1-202ENST00000371146 SPRR1BP22528 89 aa3.88□□□□□ -1.79
USP1-202ENST00000371146 A0A1B0GU69 56 aa3.88□□□□□ -1.79
USP1-202ENST00000371146 Q5W150 140 aa3.87□□□□□ -1.79
USP1-202ENST00000371146 A0A1B0GVX0 72 aa3.86□□□□□ -1.79
USP1-202ENST00000371146 MUC2Q02817 5179 aa3.86□□□□□ -1.79
USP1-202ENST00000371146 KRTAP15-1Q3LI76 137 aa3.85□□□□□ -1.79
USP1-202ENST00000371146 TP53AIP1Q9HCN2 124 aa3.84□□□□□ -1.79
USP1-202ENST00000371146 XP32Q5T750 250 aa3.84□□□□□ -1.79
USP1-202ENST00000371146 LPAP08519 4548 aa3.83□□□□□ -1.8
USP1-202ENST00000371146 ACYP2P14621 99 aa3.82□□□□□ -1.8
USP1-202ENST00000371146 MRPL34Q9BQ48 92 aaKnown RBP3.81□□□□□ -1.8
USP1-202ENST00000371146 KRTAP13-3Q3SY46 172 aa3.79□□□□□ -1.8
USP1-202ENST00000371146 SPINT4Q6UDR6 99 aa3.78□□□□□ -1.8
USP1-202ENST00000371146 TPRXLQ17RH7 258 aa3.77□□□□□ -1.81
USP1-202ENST00000371146 CAMK2N1Q7Z7J9 78 aa3.74□□□□□ -1.81
USP1-202ENST00000371146 MMP24-AS1A0A0U1RRL7 71 aa3.74□□□□□ -1.81
USP1-202ENST00000371146 RPL37P61927 97 aaKnown RBP3.74□□□□□ -1.81
USP1-202ENST00000371146 FAT4Q6V0I7 4981 aa3.7□□□□□ -1.82
USP1-202ENST00000371146 RPS29P62273 56 aaKnown RBP3.68□□□□□ -1.82
USP1-202ENST00000371146 KRTAP4-1Q9BYQ7 146 aa3.65□□□□□ -1.83
USP1-202ENST00000371146 HMCN2Q8NDA2 5059 aa3.64□□□□□ -1.83
USP1-202ENST00000371146 H0YAA0 97 aa3.62□□□□□ -1.83
USP1-202ENST00000371146 PKHD1L1Q86WI1 4243 aa3.62□□□□□ -1.83
USP1-202ENST00000371146 KRTAP10-10P60014 251 aa3.61□□□□□ -1.83
USP1-202ENST00000371146 A0A1B0GU33 70 aa3.58□□□□□ -1.84
USP1-202ENST00000371146 CRIPTQ9P021 101 aa3.58□□□□□ -1.84
USP1-202ENST00000371146 S4R3F8 94 aa3.55□□□□□ -1.84
USP1-202ENST00000371146 TNXBP22105 4242 aa3.54□□□□□ -1.84
USP1-202ENST00000371146 A0A0D9SG42 100 aa3.51□□□□□ -1.85
USP1-202ENST00000371146 H1FX-AS1Q4G0G2 97 aa3.51□□□□□ -1.85
USP1-202ENST00000371146 PRO2289Q9P1D8 64 aa3.47□□□□□ -1.85
USP1-202ENST00000371146 R4GN34 69 aa3.45□□□□□ -1.86
USP1-202ENST00000371146 KRTAP23-1A1A580 65 aa3.44□□□□□ -1.86
USP1-202ENST00000371146 M0QZ58 72 aa3.43□□□□□ -1.86
USP1-202ENST00000371146 MT1HP80294 61 aa3.42□□□□□ -1.86
USP1-202ENST00000371146 C10orf95Q9H7T3 257 aa3.41□□□□□ -1.86
USP1-202ENST00000371146 PLAC4Q8WY50 150 aa3.39□□□□□ -1.87
USP1-202ENST00000371146 USH2AO75445 5202 aa3.38□□□□□ -1.87
USP1-202ENST00000371146 KRTAP3-1Q9BYR8 98 aa3.35□□□□□ -1.87
USP1-202ENST00000371146 KRTAP10-6P60371 365 aaPredicted RBP3.34□□□□□ -1.87
USP1-202ENST00000371146 KRTAP9-2Q9BYQ4 174 aa3.32□□□□□ -1.88
USP1-202ENST00000371146 LCE2CQ5TA81 110 aa3.3□□□□□ -1.88
USP1-202ENST00000371146 KRTAP3-2Q9BYR7 98 aa3.28□□□□□ -1.88
USP1-202ENST00000371146 MUC17Q685J3 4493 aa3.28□□□□□ -1.88
USP1-202ENST00000371146 INE1O15225 51 aa3.27□□□□□ -1.89
USP1-202ENST00000371146 LORP23490 312 aaPredicted RBP3.27□□□□□ -1.89
USP1-202ENST00000371146 MT1FP04733 61 aa3.26□□□□□ -1.89
USP1-202ENST00000371146 MT2AP02795 61 aa3.26□□□□□ -1.89
USP1-202ENST00000371146 LCE2AQ5TA79 106 aaPredicted RBP3.23□□□□□ -1.89
USP1-202ENST00000371146 KRTAP19-2Q3LHN2 52 aa3.22□□□□□ -1.89
USP1-202ENST00000371146 CRCT1Q9UGL9 99 aa3.18□□□□□ -1.9
USP1-202ENST00000371146 KRTAP12-2P59991 146 aa3.17□□□□□ -1.9
USP1-202ENST00000371146 KRTAP3-3Q9BYR6 98 aa3.17□□□□□ -1.9
USP1-202ENST00000371146 KRTAP13-4Q3LI77 160 aa3.16□□□□□ -1.9
USP1-202ENST00000371146 KRTAP9-8Q9BYQ0 159 aa3.16□□□□□ -1.9
USP1-202ENST00000371146 FLGP20930 4061 aaPredicted RBP3.14□□□□□ -1.91
USP1-202ENST00000371146 KRTAP9-6A0A140TA67 174 aa3.14□□□□□ -1.91
USP1-202ENST00000371146 SYNE2Q8WXH0 6885 aaKnown RBP3.12□□□□□ -1.91
USP1-202ENST00000371146 SSPOA2VEC9 5147 aa3.11□□□□□ -1.91
USP1-202ENST00000371146 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
USP1-202ENST00000371146 LCE2BO14633 110 aa3.1□□□□□ -1.91
USP1-202ENST00000371146 KRTAP12-1P59990 96 aa3.09□□□□□ -1.91
USP1-202ENST00000371146 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.92
USP1-202ENST00000371146 DSTQ03001 7570 aaKnown RBP3.08□□□□□ -1.92
USP1-202ENST00000371146 PP632Q6XCG6 107 aa3.07□□□□□ -1.92
USP1-202ENST00000371146 KRTAP19-1Q8IUB9 90 aa3.06□□□□□ -1.92
USP1-202ENST00000371146 MACF1Q9UPN3 7388 aaKnown RBP3.04□□□□□ -1.92
USP1-202ENST00000371146 KMT2DO14686 5537 aa3.04□□□□□ -1.92
USP1-202ENST00000371146 KRTAP9-3Q9BYQ3 159 aa3.04□□□□□ -1.92
USP1-202ENST00000371146 FCGBPQ9Y6R7 5405 aaPredicted RBP3□□□□□ -1.93
USP1-202ENST00000371146 SPRR2FQ96RM1 72 aa2.95□□□□□ -1.94
USP1-202ENST00000371146 LCE2DQ5TA82 110 aaPredicted RBP2.93□□□□□ -1.94
USP1-202ENST00000371146 MT1BP07438 61 aa2.93□□□□□ -1.94
USP1-202ENST00000371146 TNP1P09430 55 aa2.92□□□□□ -1.94
USP1-202ENST00000371146 KRTAP8-1Q8IUC2 63 aa2.92□□□□□ -1.94
USP1-202ENST00000371146 KRTAP4-8A0A0G2JLE6 195 aa2.92□□□□□ -1.94
USP1-202ENST00000371146 KRTAP4-8Q9BYQ9 185 aa2.92□□□□□ -1.94
USP1-202ENST00000371146 SPRR2GQ9BYE4 73 aa2.91□□□□□ -1.94
USP1-202ENST00000371146 KRTAP9-7A8MTY7 169 aa2.9□□□□□ -1.94
USP1-202ENST00000371146 MUC12Q9UKN1 5478 aa2.89□□□□□ -1.95
USP1-202ENST00000371146 SYNE1Q8NF91 8797 aaKnown RBP2.87□□□□□ -1.95
USP1-202ENST00000371146 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.86□□□□□ -1.95
USP1-202ENST00000371146 KRTAP10-7P60409 375 aaPredicted RBP2.83□□□□□ -1.96
USP1-202ENST00000371146 KRTAP10-12P60413 245 aa2.81□□□□□ -1.96
USP1-202ENST00000371146 KRTAP10-5P60370 271 aa2.8□□□□□ -1.96
USP1-202ENST00000371146 KRTAP19-8Q3LI54 63 aa2.8□□□□□ -1.96
USP1-202ENST00000371146 MT1XP80297 61 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms