RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 KRTAP9-4Q9BYQ2 154 aa2.09□□□□□ -2.08
MCF2-203ENST00000370576 MT1HL1P0DM35 61 aa2.09□□□□□ -2.08
MCF2-203ENST00000370576 HMCN2Q8NDA2 5059 aa2.08□□□□□ -2.08
MCF2-203ENST00000370576 MMP24-AS1A0A0U1RRL7 71 aa2.07□□□□□ -2.08
MCF2-203ENST00000370576 KRTAP9-9Q9BYP9 154 aa2.07□□□□□ -2.08
MCF2-203ENST00000370576 ETDCA0A1B0GVM5 59 aa2.07□□□□□ -2.08
MCF2-203ENST00000370576 DNAL4O96015 105 aa2.07□□□□□ -2.08
MCF2-203ENST00000370576 HERC1Q15751 4861 aa2.06□□□□□ -2.08
MCF2-203ENST00000370576 PRR15LQ9BU68 103 aa2.06□□□□□ -2.08
MCF2-203ENST00000370576 KRTAP4-5Q9BYR2 181 aa2.05□□□□□ -2.08
MCF2-203ENST00000370576 PRLHP81277 87 aa2.04□□□□□ -2.08
MCF2-203ENST00000370576 KRTAP19-2Q3LHN2 52 aa2.04□□□□□ -2.08
MCF2-203ENST00000370576 SPAG11AQ6PDA7 123 aa2.04□□□□□ -2.08
MCF2-203ENST00000370576 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
MCF2-203ENST00000370576 HRES1P13985 223 aa2.04□□□□□ -2.08
MCF2-203ENST00000370576 SPINK1P00995 79 aa2.03□□□□□ -2.08
MCF2-203ENST00000370576 KRTAP19-4Q3LI73 84 aa2.02□□□□□ -2.09
MCF2-203ENST00000370576 UBL5Q9BZL1 73 aa2.02□□□□□ -2.09
MCF2-203ENST00000370576 A0A0G2JQZ4 141 aa2.02□□□□□ -2.09
MCF2-203ENST00000370576 NREPQ16612 68 aa2.02□□□□□ -2.09
MCF2-203ENST00000370576 K7EQZ3 153 aa2□□□□□ -2.09
MCF2-203ENST00000370576 TP53AIP1Q9HCN2 124 aa2□□□□□ -2.09
MCF2-203ENST00000370576 IGKV2-24A0A0C4DH68 120 aa1.99□□□□□ -2.09
MCF2-203ENST00000370576 SRRM2Q9UQ35 2752 aaKnown RBP1.99□□□□□ -2.09
MCF2-203ENST00000370576 KRTAP9-6A0A140TA67 174 aa1.99□□□□□ -2.09
MCF2-203ENST00000370576 LINC00304Q8N9R0 145 aa1.99□□□□□ -2.09
MCF2-203ENST00000370576 UBR4Q5T4S7 5183 aa1.99□□□□□ -2.09
MCF2-203ENST00000370576 LRP2P98164 4655 aa1.99□□□□□ -2.09
MCF2-203ENST00000370576 FAT4Q6V0I7 4981 aa1.98□□□□□ -2.09
MCF2-203ENST00000370576 H0Y9P7 68 aa1.97□□□□□ -2.09
MCF2-203ENST00000370576 UQCR11O14957 56 aa1.97□□□□□ -2.09
MCF2-203ENST00000370576 INE1O15225 51 aa1.97□□□□□ -2.09
MCF2-203ENST00000370576 SPINT4Q6UDR6 99 aa1.97□□□□□ -2.09
MCF2-203ENST00000370576 HIGD2AQ9BW72 106 aa1.97□□□□□ -2.09
MCF2-203ENST00000370576 MRPL34Q9BQ48 92 aaKnown RBP1.96□□□□□ -2.1
MCF2-203ENST00000370576 LINC00208Q96KT6 92 aa1.95□□□□□ -2.1
MCF2-203ENST00000370576 KRTAP9-2Q9BYQ4 174 aa1.95□□□□□ -2.1
MCF2-203ENST00000370576 IGKV2-30P06310 120 aa1.95□□□□□ -2.1
MCF2-203ENST00000370576 Q5VSD8 79 aa1.95□□□□□ -2.1
MCF2-203ENST00000370576 LCE1AQ5T7P2 110 aa1.94□□□□□ -2.1
MCF2-203ENST00000370576 WFDC13Q8IUB5 93 aa1.94□□□□□ -2.1
MCF2-203ENST00000370576 LCE1FQ5T754 118 aa1.93□□□□□ -2.1
MCF2-203ENST00000370576 RPL37P61927 97 aaKnown RBP1.93□□□□□ -2.1
MCF2-203ENST00000370576 DEFB105AQ8NG35 78 aa1.93□□□□□ -2.1
MCF2-203ENST00000370576 FLG2Q5D862 2391 aaPredicted RBP1.92□□□□□ -2.1
MCF2-203ENST00000370576 KRTAP9-7A8MTY7 169 aa1.92□□□□□ -2.1
MCF2-203ENST00000370576 Q8N9L7 120 aa1.92□□□□□ -2.1
MCF2-203ENST00000370576 ANAPC11Q9NYG5 84 aa1.92□□□□□ -2.1
MCF2-203ENST00000370576 LPAP08519 4548 aa1.91□□□□□ -2.1
MCF2-203ENST00000370576 NDUFB1O75438 58 aa1.91□□□□□ -2.1
MCF2-203ENST00000370576 RNF213Q63HN8 5207 aa1.9□□□□□ -2.11
MCF2-203ENST00000370576 IGKV2D-30A0A075B6S6 120 aa1.9□□□□□ -2.11
MCF2-203ENST00000370576 SMR3BP02814 79 aaPredicted RBP1.9□□□□□ -2.11
MCF2-203ENST00000370576 PP632Q6XCG6 107 aa1.89□□□□□ -2.11
MCF2-203ENST00000370576 COA5Q86WW8 74 aa1.89□□□□□ -2.11
MCF2-203ENST00000370576 KRTAP4-8Q9BYQ9 185 aa1.89□□□□□ -2.11
MCF2-203ENST00000370576 KRTAP12-2P59991 146 aa1.89□□□□□ -2.11
MCF2-203ENST00000370576 H0YAA0 97 aa1.88□□□□□ -2.11
MCF2-203ENST00000370576 HAMPP81172 84 aa1.88□□□□□ -2.11
MCF2-203ENST00000370576 KRTAP4-1Q9BYQ7 146 aa1.85□□□□□ -2.11
MCF2-203ENST00000370576 MUC2Q02817 5179 aa1.84□□□□□ -2.11
MCF2-203ENST00000370576 DMBT1Q9UGM3 2413 aaPredicted RBP1.83□□□□□ -2.12
MCF2-203ENST00000370576 KRTAP10-6P60371 365 aaPredicted RBP1.82□□□□□ -2.12
MCF2-203ENST00000370576 COX6B2Q6YFQ2 88 aa1.82□□□□□ -2.12
MCF2-203ENST00000370576 SPRR5A0A1B0GTR4 108 aa1.82□□□□□ -2.12
MCF2-203ENST00000370576 KRTAP9-3Q9BYQ3 159 aa1.81□□□□□ -2.12
MCF2-203ENST00000370576 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
MCF2-203ENST00000370576 LCE4AQ5TA78 99 aa1.79□□□□□ -2.12
MCF2-203ENST00000370576 ACYP2P14621 99 aa1.78□□□□□ -2.13
MCF2-203ENST00000370576 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
MCF2-203ENST00000370576 SSPOA2VEC9 5147 aa1.77□□□□□ -2.13
MCF2-203ENST00000370576 H1FX-AS1Q4G0G2 97 aa1.76□□□□□ -2.13
MCF2-203ENST00000370576 PLAC4Q8WY50 150 aa1.76□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP4-7Q9BYR0 210 aa1.76□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP4-8A0A0G2JLE6 195 aa1.76□□□□□ -2.13
MCF2-203ENST00000370576 A0A1B0GU69 56 aa1.75□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP6-3Q3LI67 103 aa1.74□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP13-4Q3LI77 160 aa1.74□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP4-12Q9BQ66 201 aa1.74□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP9-8Q9BYQ0 159 aa1.73□□□□□ -2.13
MCF2-203ENST00000370576 SPRR2GQ9BYE4 73 aa1.73□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.73□□□□□ -2.13
MCF2-203ENST00000370576 KRTAP19-8Q3LI54 63 aa1.73□□□□□ -2.13
MCF2-203ENST00000370576 MT1HP80294 61 aa1.72□□□□□ -2.13
MCF2-203ENST00000370576 CRIPTQ9P021 101 aa1.72□□□□□ -2.13
MCF2-203ENST00000370576 PCOTHQ58A44 107 aa1.71□□□□□ -2.14
MCF2-203ENST00000370576 C9orf92A6NGG3 77 aa1.7□□□□□ -2.14
MCF2-203ENST00000370576 KRTAP19-1Q8IUB9 90 aa1.7□□□□□ -2.14
MCF2-203ENST00000370576 KRTAP5-3Q6L8H2 238 aa1.69□□□□□ -2.14
MCF2-203ENST00000370576 KRTAP4-9Q9BYQ8 210 aa1.68□□□□□ -2.14
MCF2-203ENST00000370576 S4R3F8 94 aa1.68□□□□□ -2.14
MCF2-203ENST00000370576 LCE1EQ5T753 118 aa1.68□□□□□ -2.14
MCF2-203ENST00000370576 LCE1DQ5T752 114 aa1.66□□□□□ -2.14
MCF2-203ENST00000370576 MT2AP02795 61 aa1.65□□□□□ -2.14
MCF2-203ENST00000370576 KRTAP4-2Q9BYR5 136 aa1.65□□□□□ -2.14
MCF2-203ENST00000370576 M0QZ58 72 aa1.65□□□□□ -2.15
MCF2-203ENST00000370576 C10orf95Q9H7T3 257 aa1.64□□□□□ -2.15
MCF2-203ENST00000370576 MT1FP04733 61 aa1.63□□□□□ -2.15
MCF2-203ENST00000370576 KRTAP12-1P59990 96 aa1.62□□□□□ -2.15
MCF2-203ENST00000370576 MT1BP07438 61 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms