RNA–Protein interactions for RNA: ENST00000361804.4

SMC3-201, Transcript of structural maintenance of chromosomes 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC3, Length 4,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-201ENST00000361804 DMBT1Q9UGM3 2413 aaPredicted RBP5.68□□□□□ -1.5
SMC3-201ENST00000361804 CRIPTQ9P021 101 aa5.63□□□□□ -1.51
SMC3-201ENST00000361804 LINC01554Q52M75 96 aa5.63□□□□□ -1.51
SMC3-201ENST00000361804 A8MUU9 505 aa5.62□□□□□ -1.51
SMC3-201ENST00000361804 C20orf166-AS1Q96NR2 134 aa5.61□□□□□ -1.51
SMC3-201ENST00000361804 A0A1B0GU33 70 aa5.59□□□□□ -1.51
SMC3-201ENST00000361804 MUC17Q685J3 4493 aa5.58□□□□□ -1.52
SMC3-201ENST00000361804 H1FX-AS1Q4G0G2 97 aa5.55□□□□□ -1.52
SMC3-201ENST00000361804 RPS29P62273 56 aaKnown RBP5.55□□□□□ -1.52
SMC3-201ENST00000361804 MUC2Q02817 5179 aa5.55□□□□□ -1.52
SMC3-201ENST00000361804 COX6B2Q6YFQ2 88 aa5.52□□□□□ -1.53
SMC3-201ENST00000361804 PCLOQ9Y6V0 5065 aa5.52□□□□□ -1.53
SMC3-201ENST00000361804 KRTAP10-8P60410 259 aa5.5□□□□□ -1.53
SMC3-201ENST00000361804 A0A0D9SG42 100 aa5.49□□□□□ -1.53
SMC3-201ENST00000361804 KRTAP13-4Q3LI77 160 aa5.47□□□□□ -1.53
SMC3-201ENST00000361804 HERC2O95714 4834 aa5.46□□□□□ -1.53
SMC3-201ENST00000361804 KRTAP3-3Q9BYR6 98 aa5.46□□□□□ -1.54
SMC3-201ENST00000361804 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
SMC3-201ENST00000361804 MT1HL1P0DM35 61 aa5.44□□□□□ -1.54
SMC3-201ENST00000361804 HERC1Q15751 4861 aa5.43□□□□□ -1.54
SMC3-201ENST00000361804 KRTAP10-6P60371 365 aaPredicted RBP5.43□□□□□ -1.54
SMC3-201ENST00000361804 KRTAP4-5Q9BYR2 181 aa5.41□□□□□ -1.54
SMC3-201ENST00000361804 P0C880 135 aa5.39□□□□□ -1.55
SMC3-201ENST00000361804 KRTAP3-2Q9BYR7 98 aa5.38□□□□□ -1.55
SMC3-201ENST00000361804 BIRC6Q9NR09 4857 aa5.38□□□□□ -1.55
SMC3-201ENST00000361804 XP32Q5T750 250 aa5.38□□□□□ -1.55
SMC3-201ENST00000361804 Q5VSD8 79 aa5.37□□□□□ -1.55
SMC3-201ENST00000361804 FLGP20930 4061 aaPredicted RBP5.36□□□□□ -1.55
SMC3-201ENST00000361804 C10orf95Q9H7T3 257 aa5.35□□□□□ -1.55
SMC3-201ENST00000361804 RPL37P61927 97 aaKnown RBP5.34□□□□□ -1.55
SMC3-201ENST00000361804 H3BS24 57 aa5.33□□□□□ -1.56
SMC3-201ENST00000361804 K7ERS5 55 aa5.33□□□□□ -1.56
SMC3-201ENST00000361804 S4R3F8 94 aa5.33□□□□□ -1.56
SMC3-201ENST00000361804 ROMO1P60602 79 aa5.3□□□□□ -1.56
SMC3-201ENST00000361804 HMCN2Q8NDA2 5059 aa5.3□□□□□ -1.56
SMC3-201ENST00000361804 TPRXLQ17RH7 258 aa5.29□□□□□ -1.56
SMC3-201ENST00000361804 KRTAP12-2P59991 146 aa5.28□□□□□ -1.56
SMC3-201ENST00000361804 SPINT4Q6UDR6 99 aa5.25□□□□□ -1.57
SMC3-201ENST00000361804 FAT4Q6V0I7 4981 aa5.23□□□□□ -1.57
SMC3-201ENST00000361804 KRTAP12-1P59990 96 aa5.17□□□□□ -1.58
SMC3-201ENST00000361804 KRTAP19-2Q3LHN2 52 aa5.16□□□□□ -1.58
SMC3-201ENST00000361804 RNF213Q63HN8 5207 aa5.15□□□□□ -1.59
SMC3-201ENST00000361804 KRTAP4-1Q9BYQ7 146 aa5.15□□□□□ -1.59
SMC3-201ENST00000361804 UBR4Q5T4S7 5183 aa5.13□□□□□ -1.59
SMC3-201ENST00000361804 LORP23490 312 aaPredicted RBP5.07□□□□□ -1.6
SMC3-201ENST00000361804 M0QZ58 72 aa5.05□□□□□ -1.6
SMC3-201ENST00000361804 NDUFAF8A1L188 74 aa5.01□□□□□ -1.61
SMC3-201ENST00000361804 KRTAP15-1Q3LI76 137 aa4.99□□□□□ -1.61
SMC3-201ENST00000361804 R4GN34 69 aa4.99□□□□□ -1.61
SMC3-201ENST00000361804 LCE2CQ5TA81 110 aa4.82□□□□□ -1.64
SMC3-201ENST00000361804 SEC61BP60468 96 aaKnown RBP4.82□□□□□ -1.64
SMC3-201ENST00000361804 J3QL48 77 aa4.8□□□□□ -1.64
SMC3-201ENST00000361804 CAMK2N1Q7Z7J9 78 aa4.76□□□□□ -1.65
SMC3-201ENST00000361804 PLAC4Q8WY50 150 aa4.74□□□□□ -1.65
SMC3-201ENST00000361804 USH2AO75445 5202 aa4.57□□□□□ -1.68
SMC3-201ENST00000361804 MT1HP80294 61 aa4.54□□□□□ -1.68
SMC3-201ENST00000361804 KRTAP19-1Q8IUB9 90 aa4.53□□□□□ -1.69
SMC3-201ENST00000361804 TNP1P09430 55 aa4.51□□□□□ -1.69
SMC3-201ENST00000361804 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
SMC3-201ENST00000361804 KRTAP9-8Q9BYQ0 159 aa4.5□□□□□ -1.69
SMC3-201ENST00000361804 LUZP6Q538Z0 58 aa4.49□□□□□ -1.69
SMC3-201ENST00000361804 M0R2T5 61 aa4.47□□□□□ -1.69
SMC3-201ENST00000361804 MT1FP04733 61 aa4.46□□□□□ -1.7
SMC3-201ENST00000361804 MT2AP02795 61 aa4.41□□□□□ -1.7
SMC3-201ENST00000361804 SPRR2GQ9BYE4 73 aa4.41□□□□□ -1.7
SMC3-201ENST00000361804 KMT2DO14686 5537 aa4.4□□□□□ -1.71
SMC3-201ENST00000361804 LCE3AQ5TA76 89 aa4.39□□□□□ -1.71
SMC3-201ENST00000361804 KRTAP10-10P60014 251 aa4.36□□□□□ -1.71
SMC3-201ENST00000361804 SPRR5A0A1B0GTR4 108 aa4.31□□□□□ -1.72
SMC3-201ENST00000361804 MT1BP07438 61 aa4.31□□□□□ -1.72
SMC3-201ENST00000361804 KRTAP9-3Q9BYQ3 159 aa4.29□□□□□ -1.72
SMC3-201ENST00000361804 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
SMC3-201ENST00000361804 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
SMC3-201ENST00000361804 KRTAP19-8Q3LI54 63 aa4.26□□□□□ -1.73
SMC3-201ENST00000361804 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
SMC3-201ENST00000361804 LCE2AQ5TA79 106 aaPredicted RBP4.23□□□□□ -1.73
SMC3-201ENST00000361804 MT1XP80297 61 aa4.23□□□□□ -1.73
SMC3-201ENST00000361804 SSPOA2VEC9 5147 aa4.21□□□□□ -1.74
SMC3-201ENST00000361804 LCE2BO14633 110 aa4.2□□□□□ -1.74
SMC3-201ENST00000361804 KRTAP10-7P60409 375 aaPredicted RBP4.17□□□□□ -1.74
SMC3-201ENST00000361804 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
SMC3-201ENST00000361804 KRTAP10-12P60413 245 aa4.12□□□□□ -1.75
SMC3-201ENST00000361804 LCE2DQ5TA82 110 aaPredicted RBP4.11□□□□□ -1.75
SMC3-201ENST00000361804 KRTAP12-3P60328 96 aa4.11□□□□□ -1.75
SMC3-201ENST00000361804 FSIP2Q5CZC0 6907 aa4.03□□□□□ -1.76
SMC3-201ENST00000361804 KRTAP4-8A0A0G2JLE6 195 aa3.97□□□□□ -1.77
SMC3-201ENST00000361804 KRTAP19-5Q3LI72 72 aa3.97□□□□□ -1.77
SMC3-201ENST00000361804 KRTAP4-8Q9BYQ9 185 aa3.97□□□□□ -1.77
SMC3-201ENST00000361804 FCGBPQ9Y6R7 5405 aaPredicted RBP3.94□□□□□ -1.78
SMC3-201ENST00000361804 KRTAP4-7Q9BYR0 210 aa3.89□□□□□ -1.79
SMC3-201ENST00000361804 PRO2289Q9P1D8 64 aa3.88□□□□□ -1.79
SMC3-201ENST00000361804 KRTAP9-6A8MVA2 160 aa3.86□□□□□ -1.79
SMC3-201ENST00000361804 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
SMC3-201ENST00000361804 MUC12Q9UKN1 5478 aa3.84□□□□□ -1.79
SMC3-201ENST00000361804 KRTAP19-7Q3SYF9 63 aa3.81□□□□□ -1.8
SMC3-201ENST00000361804 INE1O15225 51 aa3.77□□□□□ -1.81
SMC3-201ENST00000361804 KRTAP19-6Q3LI70 58 aa3.69□□□□□ -1.82
SMC3-201ENST00000361804 MACF1Q9UPN3 7388 aaKnown RBP3.67□□□□□ -1.82
SMC3-201ENST00000361804 DSTQ03001 7570 aaKnown RBP3.67□□□□□ -1.82
SMC3-201ENST00000361804 MDN1Q9NU22 5596 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms