RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 XP32Q5T750 250 aa11.88□□□□□ -0.51
LDB1-201ENST00000361198 RPL37P61927 97 aaKnown RBP11.86□□□□□ -0.51
LDB1-201ENST00000361198 PRAC1Q96KF2 57 aa11.81□□□□□ -0.52
LDB1-201ENST00000361198 ADM2Q7Z4H4 148 aa11.8□□□□□ -0.52
LDB1-201ENST00000361198 COX6B2Q6YFQ2 88 aa11.77□□□□□ -0.52
LDB1-201ENST00000361198 H0YAA0 97 aa11.75□□□□□ -0.53
LDB1-201ENST00000361198 KRTAP4-5Q9BYR2 181 aa11.74□□□□□ -0.53
LDB1-201ENST00000361198 A0A1B0GU33 70 aa11.7□□□□□ -0.54
LDB1-201ENST00000361198 H1FX-AS1Q4G0G2 97 aa11.66□□□□□ -0.54
LDB1-201ENST00000361198 ABCA13Q86UQ4 5058 aa11.65□□□□□ -0.54
LDB1-201ENST00000361198 LRP2P98164 4655 aa11.64□□□□□ -0.55
LDB1-201ENST00000361198 LPAP08519 4548 aa11.6□□□□□ -0.55
LDB1-201ENST00000361198 TPRXLQ17RH7 258 aa11.59□□□□□ -0.55
LDB1-201ENST00000361198 CSAG1Q6PB30 78 aa11.49□□□□□ -0.57
LDB1-201ENST00000361198 LINC01554Q52M75 96 aa11.49□□□□□ -0.57
LDB1-201ENST00000361198 KRTAP3-3Q9BYR6 98 aa11.47□□□□□ -0.57
LDB1-201ENST00000361198 HERC2O95714 4834 aa11.44□□□□□ -0.58
LDB1-201ENST00000361198 KRTAP10-6P60371 365 aaPredicted RBP11.38□□□□□ -0.59
LDB1-201ENST00000361198 S4R3F8 94 aa11.37□□□□□ -0.59
LDB1-201ENST00000361198 K7ERS5 55 aa11.31□□□□□ -0.6
LDB1-201ENST00000361198 J3QL48 77 aa11.3□□□□□ -0.6
LDB1-201ENST00000361198 BIRC6Q9NR09 4857 aa11.3□□□□□ -0.6
LDB1-201ENST00000361198 KRTAP3-2Q9BYR7 98 aa11.3□□□□□ -0.6
LDB1-201ENST00000361198 KRTAP25-1Q3LHN0 102 aa11.24□□□□□ -0.61
LDB1-201ENST00000361198 KRTAP13-4Q3LI77 160 aa11.21□□□□□ -0.61
LDB1-201ENST00000361198 SEC61BP60468 96 aaKnown RBP11.14□□□□□ -0.63
LDB1-201ENST00000361198 MUC17Q685J3 4493 aa11.13□□□□□ -0.63
LDB1-201ENST00000361198 P0C880 135 aa11.1□□□□□ -0.63
LDB1-201ENST00000361198 ROMO1P60602 79 aa11.07□□□□□ -0.64
LDB1-201ENST00000361198 A0A0D9SG42 100 aa11.05□□□□□ -0.64
LDB1-201ENST00000361198 KRTAP4-1Q9BYQ7 146 aa11.04□□□□□ -0.64
LDB1-201ENST00000361198 CRIPTQ9P021 101 aa10.96□□□□□ -0.65
LDB1-201ENST00000361198 PCLOQ9Y6V0 5065 aa10.91□□□□□ -0.66
LDB1-201ENST00000361198 HERC1Q15751 4861 aa10.89□□□□□ -0.67
LDB1-201ENST00000361198 KRTAP12-2P59991 146 aa10.85□□□□□ -0.67
LDB1-201ENST00000361198 MUC2Q02817 5179 aa10.84□□□□□ -0.67
LDB1-201ENST00000361198 M0QZ58 72 aa10.81□□□□□ -0.68
LDB1-201ENST00000361198 KRTAP12-1P59990 96 aa10.81□□□□□ -0.68
LDB1-201ENST00000361198 KRTAP19-2Q3LHN2 52 aa10.8□□□□□ -0.68
LDB1-201ENST00000361198 HMCN2Q8NDA2 5059 aa10.77□□□□□ -0.69
LDB1-201ENST00000361198 SPINT4Q6UDR6 99 aa10.7□□□□□ -0.7
LDB1-201ENST00000361198 C10orf95Q9H7T3 257 aa10.62□□□□□ -0.71
LDB1-201ENST00000361198 FLGP20930 4061 aaPredicted RBP10.6□□□□□ -0.71
LDB1-201ENST00000361198 R4GN34 69 aa10.54□□□□□ -0.72
LDB1-201ENST00000361198 LORP23490 312 aaPredicted RBP10.53□□□□□ -0.72
LDB1-201ENST00000361198 H3BS24 57 aa10.36□□□□□ -0.75
LDB1-201ENST00000361198 FAT4Q6V0I7 4981 aa10.35□□□□□ -0.75
LDB1-201ENST00000361198 LCE2CQ5TA81 110 aa10.31□□□□□ -0.76
LDB1-201ENST00000361198 UBR4Q5T4S7 5183 aa10.3□□□□□ -0.76
LDB1-201ENST00000361198 RNF213Q63HN8 5207 aa10.26□□□□□ -0.77
LDB1-201ENST00000361198 KRTAP15-1Q3LI76 137 aa10.26□□□□□ -0.77
LDB1-201ENST00000361198 MT1HP80294 61 aa10.05□□□□□ -0.8
LDB1-201ENST00000361198 M0R2T5 61 aa10.02□□□□□ -0.81
LDB1-201ENST00000361198 CAMK2N1Q7Z7J9 78 aa9.94□□□□□ -0.82
LDB1-201ENST00000361198 NDUFAF8A1L188 74 aa9.91□□□□□ -0.82
LDB1-201ENST00000361198 PP632Q6XCG6 107 aa9.86□□□□□ -0.83
LDB1-201ENST00000361198 SPRR2GQ9BYE4 73 aa9.84□□□□□ -0.83
LDB1-201ENST00000361198 KRTAP19-1Q8IUB9 90 aa9.82□□□□□ -0.84
LDB1-201ENST00000361198 PLAC4Q8WY50 150 aa9.8□□□□□ -0.84
LDB1-201ENST00000361198 MT2AP02795 61 aa9.79□□□□□ -0.84
LDB1-201ENST00000361198 MT1FP04733 61 aa9.78□□□□□ -0.84
LDB1-201ENST00000361198 KRTAP9-8Q9BYQ0 159 aa9.77□□□□□ -0.84
LDB1-201ENST00000361198 KRTAP10-10P60014 251 aa9.74□□□□□ -0.85
LDB1-201ENST00000361198 TNP1P09430 55 aa9.61□□□□□ -0.87
LDB1-201ENST00000361198 KRTAP23-1A1A580 65 aa9.59□□□□□ -0.87
LDB1-201ENST00000361198 KRTAP19-8Q3LI54 63 aa9.47□□□□□ -0.89
LDB1-201ENST00000361198 KRTAP9-3Q9BYQ3 159 aa9.38□□□□□ -0.91
LDB1-201ENST00000361198 MT1BP07438 61 aa9.37□□□□□ -0.91
LDB1-201ENST00000361198 LUZP6Q538Z0 58 aa9.33□□□□□ -0.92
LDB1-201ENST00000361198 SPRR5A0A1B0GTR4 108 aa9.22□□□□□ -0.93
LDB1-201ENST00000361198 LCE2AQ5TA79 106 aaPredicted RBP9.21□□□□□ -0.93
LDB1-201ENST00000361198 KRTAP10-5P60370 271 aa9.21□□□□□ -0.94
LDB1-201ENST00000361198 MT1XP80297 61 aa9.2□□□□□ -0.94
LDB1-201ENST00000361198 LCE3AQ5TA76 89 aa9.09□□□□□ -0.95
LDB1-201ENST00000361198 LCE2BO14633 110 aa9.07□□□□□ -0.96
LDB1-201ENST00000361198 A0A0A0MQY5 61 aa8.98□□□□□ -0.97
LDB1-201ENST00000361198 USH2AO75445 5202 aa8.97□□□□□ -0.97
LDB1-201ENST00000361198 KRTAP8-1Q8IUC2 63 aa8.93□□□□□ -0.98
LDB1-201ENST00000361198 KRTAP10-7P60409 375 aaPredicted RBP8.91□□□□□ -0.98
LDB1-201ENST00000361198 PRO2289Q9P1D8 64 aa8.91□□□□□ -0.98
LDB1-201ENST00000361198 KRTAP10-12P60413 245 aa8.88□□□□□ -0.99
LDB1-201ENST00000361198 KRTAP12-3P60328 96 aa8.68□□□□□ -1.02
LDB1-201ENST00000361198 KMT2DO14686 5537 aa8.6□□□□□ -1.03
LDB1-201ENST00000361198 KRTAP4-8A0A0G2JLE6 195 aa8.46□□□□□ -1.05
LDB1-201ENST00000361198 KRTAP19-5Q3LI72 72 aa8.46□□□□□ -1.05
LDB1-201ENST00000361198 KRTAP4-8Q9BYQ9 185 aa8.46□□□□□ -1.05
LDB1-201ENST00000361198 SSPOA2VEC9 5147 aa8.46□□□□□ -1.06
LDB1-201ENST00000361198 FSIP2Q5CZC0 6907 aa8.33□□□□□ -1.08
LDB1-201ENST00000361198 KRTAP19-6Q3LI70 58 aa8.27□□□□□ -1.09
LDB1-201ENST00000361198 KRTAP19-7Q3SYF9 63 aa8.21□□□□□ -1.1
LDB1-201ENST00000361198 LCE3CQ5T5A8 94 aa8.18□□□□□ -1.1
LDB1-201ENST00000361198 INE1O15225 51 aa8.08□□□□□ -1.12
LDB1-201ENST00000361198 LCE2DQ5TA82 110 aaPredicted RBP8.05□□□□□ -1.12
LDB1-201ENST00000361198 MT1EP04732 61 aa8□□□□□ -1.13
LDB1-201ENST00000361198 FCGBPQ9Y6R7 5405 aaPredicted RBP7.95□□□□□ -1.14
LDB1-201ENST00000361198 MT1LQ93083 61 aa7.93□□□□□ -1.14
LDB1-201ENST00000361198 KRTAP4-7Q9BYR0 210 aa7.9□□□□□ -1.14
LDB1-201ENST00000361198 KRTAP9-6A8MVA2 160 aa7.87□□□□□ -1.15
LDB1-201ENST00000361198 KRTAP19-4Q3LI73 84 aa7.86□□□□□ -1.15
LDB1-201ENST00000361198 MUC12Q9UKN1 5478 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms