RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RPL37P61927 97 aaKnown RBP10.89□□□□□ -0.67
CCDC88B-203ENST00000359902 XP32Q5T750 250 aa10.87□□□□□ -0.67
CCDC88B-203ENST00000359902 MT1HL1P0DM35 61 aa10.86□□□□□ -0.67
CCDC88B-203ENST00000359902 KIAA1109Q2LD37 5005 aa10.84□□□□□ -0.67
CCDC88B-203ENST00000359902 MYCBP2O75592 4640 aa10.78□□□□□ -0.68
CCDC88B-203ENST00000359902 CSAG1Q6PB30 78 aa10.71□□□□□ -0.69
CCDC88B-203ENST00000359902 A0A1B0GU33 70 aa10.7□□□□□ -0.7
CCDC88B-203ENST00000359902 H0YAA0 97 aa10.7□□□□□ -0.7
CCDC88B-203ENST00000359902 H1FX-AS1Q4G0G2 97 aa10.67□□□□□ -0.7
CCDC88B-203ENST00000359902 KRTAP3-3Q9BYR6 98 aa10.65□□□□□ -0.7
CCDC88B-203ENST00000359902 EPPK1P58107 5090 aaKnown RBP10.64□□□□□ -0.71
CCDC88B-203ENST00000359902 TPRXLQ17RH7 258 aa10.55□□□□□ -0.72
CCDC88B-203ENST00000359902 S4R3F8 94 aa10.54□□□□□ -0.72
CCDC88B-203ENST00000359902 KRTAP4-5Q9BYR2 181 aa10.5□□□□□ -0.73
CCDC88B-203ENST00000359902 KRTAP10-6P60371 365 aaPredicted RBP10.49□□□□□ -0.73
CCDC88B-203ENST00000359902 LRP2P98164 4655 aa10.46□□□□□ -0.73
CCDC88B-203ENST00000359902 LPAP08519 4548 aa10.45□□□□□ -0.74
CCDC88B-203ENST00000359902 H3BS24 57 aa10.44□□□□□ -0.74
CCDC88B-203ENST00000359902 KRTAP3-2Q9BYR7 98 aa10.44□□□□□ -0.74
CCDC88B-203ENST00000359902 KRTAP25-1Q3LHN0 102 aa10.39□□□□□ -0.75
CCDC88B-203ENST00000359902 ABCA13Q86UQ4 5058 aa10.37□□□□□ -0.75
CCDC88B-203ENST00000359902 KRTAP13-4Q3LI77 160 aa10.33□□□□□ -0.76
CCDC88B-203ENST00000359902 P0C880 135 aa10.3□□□□□ -0.76
CCDC88B-203ENST00000359902 K7ERS5 55 aa10.27□□□□□ -0.77
CCDC88B-203ENST00000359902 ROMO1P60602 79 aa10.23□□□□□ -0.77
CCDC88B-203ENST00000359902 A0A0D9SG42 100 aa10.19□□□□□ -0.78
CCDC88B-203ENST00000359902 SEC61BP60468 96 aaKnown RBP10.15□□□□□ -0.79
CCDC88B-203ENST00000359902 J3QL48 77 aa10.13□□□□□ -0.79
CCDC88B-203ENST00000359902 HERC2O95714 4834 aa10.06□□□□□ -0.8
CCDC88B-203ENST00000359902 CRIPTQ9P021 101 aa10.06□□□□□ -0.8
CCDC88B-203ENST00000359902 MUC17Q685J3 4493 aa10.05□□□□□ -0.8
CCDC88B-203ENST00000359902 KRTAP4-1Q9BYQ7 146 aa10.04□□□□□ -0.8
CCDC88B-203ENST00000359902 M0QZ58 72 aa9.98□□□□□ -0.81
CCDC88B-203ENST00000359902 KRTAP12-2P59991 146 aa9.97□□□□□ -0.81
CCDC88B-203ENST00000359902 KRTAP12-1P59990 96 aa9.93□□□□□ -0.82
CCDC88B-203ENST00000359902 SPINT4Q6UDR6 99 aa9.87□□□□□ -0.83
CCDC88B-203ENST00000359902 BIRC6Q9NR09 4857 aa9.87□□□□□ -0.83
CCDC88B-203ENST00000359902 KRTAP19-2Q3LHN2 52 aa9.87□□□□□ -0.83
CCDC88B-203ENST00000359902 R4GN34 69 aa9.76□□□□□ -0.85
CCDC88B-203ENST00000359902 LORP23490 312 aaPredicted RBP9.72□□□□□ -0.85
CCDC88B-203ENST00000359902 C10orf95Q9H7T3 257 aa9.64□□□□□ -0.87
CCDC88B-203ENST00000359902 MUC2Q02817 5179 aa9.62□□□□□ -0.87
CCDC88B-203ENST00000359902 HERC1Q15751 4861 aa9.56□□□□□ -0.88
CCDC88B-203ENST00000359902 FLGP20930 4061 aaPredicted RBP9.54□□□□□ -0.88
CCDC88B-203ENST00000359902 PCLOQ9Y6V0 5065 aa9.54□□□□□ -0.88
CCDC88B-203ENST00000359902 KRTAP15-1Q3LI76 137 aa9.54□□□□□ -0.88
CCDC88B-203ENST00000359902 HMCN2Q8NDA2 5059 aa9.51□□□□□ -0.89
CCDC88B-203ENST00000359902 NDUFAF8A1L188 74 aa9.48□□□□□ -0.89
CCDC88B-203ENST00000359902 LCE2CQ5TA81 110 aa9.34□□□□□ -0.91
CCDC88B-203ENST00000359902 CAMK2N1Q7Z7J9 78 aa9.23□□□□□ -0.93
CCDC88B-203ENST00000359902 FAT4Q6V0I7 4981 aa9.18□□□□□ -0.94
CCDC88B-203ENST00000359902 MT1HP80294 61 aa9.08□□□□□ -0.96
CCDC88B-203ENST00000359902 RNF213Q63HN8 5207 aa9.06□□□□□ -0.96
CCDC88B-203ENST00000359902 M0R2T5 61 aa9.05□□□□□ -0.96
CCDC88B-203ENST00000359902 UBR4Q5T4S7 5183 aa9.03□□□□□ -0.96
CCDC88B-203ENST00000359902 SPRR2GQ9BYE4 73 aa9.03□□□□□ -0.96
CCDC88B-203ENST00000359902 KRTAP19-1Q8IUB9 90 aa8.99□□□□□ -0.97
CCDC88B-203ENST00000359902 PLAC4Q8WY50 150 aa8.98□□□□□ -0.97
CCDC88B-203ENST00000359902 PP632Q6XCG6 107 aa8.96□□□□□ -0.98
CCDC88B-203ENST00000359902 MT2AP02795 61 aa8.89□□□□□ -0.99
CCDC88B-203ENST00000359902 MT1FP04733 61 aa8.88□□□□□ -0.99
CCDC88B-203ENST00000359902 TNP1P09430 55 aa8.87□□□□□ -0.99
CCDC88B-203ENST00000359902 KRTAP9-8Q9BYQ0 159 aa8.87□□□□□ -0.99
CCDC88B-203ENST00000359902 KRTAP10-10P60014 251 aa8.85□□□□□ -0.99
CCDC88B-203ENST00000359902 KRTAP23-1A1A580 65 aa8.75□□□□□ -1.01
CCDC88B-203ENST00000359902 LUZP6Q538Z0 58 aa8.74□□□□□ -1.01
CCDC88B-203ENST00000359902 KRTAP19-8Q3LI54 63 aa8.67□□□□□ -1.02
CCDC88B-203ENST00000359902 MT1BP07438 61 aa8.56□□□□□ -1.04
CCDC88B-203ENST00000359902 A0A0A0MQY5 61 aa8.55□□□□□ -1.04
CCDC88B-203ENST00000359902 KRTAP9-3Q9BYQ3 159 aa8.51□□□□□ -1.05
CCDC88B-203ENST00000359902 KRTAP10-5P60370 271 aa8.45□□□□□ -1.06
CCDC88B-203ENST00000359902 LCE3AQ5TA76 89 aa8.45□□□□□ -1.06
CCDC88B-203ENST00000359902 MT1XP80297 61 aa8.44□□□□□ -1.06
CCDC88B-203ENST00000359902 SPRR5A0A1B0GTR4 108 aa8.29□□□□□ -1.08
CCDC88B-203ENST00000359902 KRTAP8-1Q8IUC2 63 aa8.25□□□□□ -1.09
CCDC88B-203ENST00000359902 LCE2AQ5TA79 106 aaPredicted RBP8.2□□□□□ -1.1
CCDC88B-203ENST00000359902 LCE2BO14633 110 aa8.19□□□□□ -1.1
CCDC88B-203ENST00000359902 KRTAP10-12P60413 245 aa8.19□□□□□ -1.1
CCDC88B-203ENST00000359902 KRTAP10-7P60409 375 aaPredicted RBP8.18□□□□□ -1.1
CCDC88B-203ENST00000359902 PRO2289Q9P1D8 64 aa8.15□□□□□ -1.1
CCDC88B-203ENST00000359902 KRTAP12-3P60328 96 aa8.06□□□□□ -1.12
CCDC88B-203ENST00000359902 USH2AO75445 5202 aa7.91□□□□□ -1.14
CCDC88B-203ENST00000359902 KRTAP19-5Q3LI72 72 aa7.8□□□□□ -1.16
CCDC88B-203ENST00000359902 KRTAP4-8A0A0G2JLE6 195 aa7.72□□□□□ -1.17
CCDC88B-203ENST00000359902 KRTAP4-8Q9BYQ9 185 aa7.72□□□□□ -1.17
CCDC88B-203ENST00000359902 KMT2DO14686 5537 aa7.68□□□□□ -1.18
CCDC88B-203ENST00000359902 INE1O15225 51 aa7.67□□□□□ -1.18
CCDC88B-203ENST00000359902 LCE3CQ5T5A8 94 aa7.58□□□□□ -1.2
CCDC88B-203ENST00000359902 KRTAP19-7Q3SYF9 63 aa7.53□□□□□ -1.2
CCDC88B-203ENST00000359902 SSPOA2VEC9 5147 aa7.52□□□□□ -1.21
CCDC88B-203ENST00000359902 KRTAP19-6Q3LI70 58 aa7.43□□□□□ -1.22
CCDC88B-203ENST00000359902 MT1EP04732 61 aa7.32□□□□□ -1.24
CCDC88B-203ENST00000359902 KRTAP9-6A8MVA2 160 aa7.29□□□□□ -1.24
CCDC88B-203ENST00000359902 MT1LQ93083 61 aa7.29□□□□□ -1.24
CCDC88B-203ENST00000359902 KRTAP4-7Q9BYR0 210 aa7.28□□□□□ -1.24
CCDC88B-203ENST00000359902 KRTAP19-4Q3LI73 84 aa7.27□□□□□ -1.25
CCDC88B-203ENST00000359902 FSIP2Q5CZC0 6907 aa7.24□□□□□ -1.25
CCDC88B-203ENST00000359902 LCE2DQ5TA82 110 aaPredicted RBP7.11□□□□□ -1.27
CCDC88B-203ENST00000359902 FCGBPQ9Y6R7 5405 aaPredicted RBP7.01□□□□□ -1.29
CCDC88B-203ENST00000359902 KRTAP2-3P0C7H8 128 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms