RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 VPS13BQ7Z7G8 4022 aa5.2□□□□□ -1.58
RNF40-202ENST00000357890 J3QL48 77 aa5.17□□□□□ -1.58
RNF40-202ENST00000357890 KRTAP13-4Q3LI77 160 aa5.15□□□□□ -1.59
RNF40-202ENST00000357890 PKHD1P08F94 4074 aa5.15□□□□□ -1.59
RNF40-202ENST00000357890 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
RNF40-202ENST00000357890 M0QZ58 72 aa5.12□□□□□ -1.59
RNF40-202ENST00000357890 R4GN34 69 aa5.11□□□□□ -1.59
RNF40-202ENST00000357890 PKD1P98161 4303 aa5.11□□□□□ -1.59
RNF40-202ENST00000357890 KRTAP12-2P59991 146 aa5.11□□□□□ -1.59
RNF40-202ENST00000357890 FAT1Q14517 4588 aa5.1□□□□□ -1.59
RNF40-202ENST00000357890 DYNC1H1Q14204 4646 aaKnown RBP5.09□□□□□ -1.59
RNF40-202ENST00000357890 KRTAP10-8P60410 259 aa5.08□□□□□ -1.6
RNF40-202ENST00000357890 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
RNF40-202ENST00000357890 CAMK2N1Q7Z7J9 78 aa5.07□□□□□ -1.6
RNF40-202ENST00000357890 XP32Q5T750 250 aa5.06□□□□□ -1.6
RNF40-202ENST00000357890 SACSQ9NZJ4 4579 aa5.06□□□□□ -1.6
RNF40-202ENST00000357890 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
RNF40-202ENST00000357890 PLAC4Q8WY50 150 aa5.05□□□□□ -1.6
RNF40-202ENST00000357890 RYR2Q92736 4967 aa5□□□□□ -1.61
RNF40-202ENST00000357890 KRTAP12-1P59990 96 aa4.98□□□□□ -1.61
RNF40-202ENST00000357890 MYCBP2O75592 4640 aa4.97□□□□□ -1.61
RNF40-202ENST00000357890 KRTAP3-3Q9BYR6 98 aa4.95□□□□□ -1.62
RNF40-202ENST00000357890 APOBP04114 4563 aaKnown RBP4.93□□□□□ -1.62
RNF40-202ENST00000357890 KRTAP3-2Q9BYR7 98 aa4.93□□□□□ -1.62
RNF40-202ENST00000357890 KMT2CQ8NEZ4 4911 aaKnown RBP4.9□□□□□ -1.62
RNF40-202ENST00000357890 LRP1Q07954 4544 aaKnown RBP4.89□□□□□ -1.63
RNF40-202ENST00000357890 HSPG2P98160 4391 aa4.89□□□□□ -1.63
RNF40-202ENST00000357890 LPAP08519 4548 aa4.86□□□□□ -1.63
RNF40-202ENST00000357890 MT1HL1P0DM35 61 aa4.86□□□□□ -1.63
RNF40-202ENST00000357890 SEC61BP60468 96 aaKnown RBP4.86□□□□□ -1.63
RNF40-202ENST00000357890 KRTAP4-5Q9BYR2 181 aa4.84□□□□□ -1.63
RNF40-202ENST00000357890 PKHD1L1Q86WI1 4243 aa4.83□□□□□ -1.64
RNF40-202ENST00000357890 M0R2T5 61 aa4.83□□□□□ -1.64
RNF40-202ENST00000357890 FAT3Q8TDW7 4589 aa4.81□□□□□ -1.64
RNF40-202ENST00000357890 KRTAP17-1Q9BYP8 105 aa4.78□□□□□ -1.64
RNF40-202ENST00000357890 RYR3Q15413 4870 aa4.78□□□□□ -1.64
RNF40-202ENST00000357890 RYR1P21817 5038 aa4.78□□□□□ -1.64
RNF40-202ENST00000357890 KIAA1109Q2LD37 5005 aa4.77□□□□□ -1.65
RNF40-202ENST00000357890 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
RNF40-202ENST00000357890 TNXBP22105 4242 aa4.69□□□□□ -1.66
RNF40-202ENST00000357890 BIRC6Q9NR09 4857 aa4.68□□□□□ -1.66
RNF40-202ENST00000357890 TNP1P09430 55 aa4.66□□□□□ -1.66
RNF40-202ENST00000357890 LRP2P98164 4655 aa4.65□□□□□ -1.66
RNF40-202ENST00000357890 EPPK1P58107 5090 aaKnown RBP4.65□□□□□ -1.67
RNF40-202ENST00000357890 LORP23490 312 aaPredicted RBP4.58□□□□□ -1.68
RNF40-202ENST00000357890 ABCA13Q86UQ4 5058 aa4.54□□□□□ -1.68
RNF40-202ENST00000357890 HERC2O95714 4834 aa4.54□□□□□ -1.68
RNF40-202ENST00000357890 MUC2Q02817 5179 aa4.48□□□□□ -1.69
RNF40-202ENST00000357890 KRTAP4-1Q9BYQ7 146 aa4.48□□□□□ -1.69
RNF40-202ENST00000357890 PRO2289Q9P1D8 64 aa4.34□□□□□ -1.71
RNF40-202ENST00000357890 PCLOQ9Y6V0 5065 aa4.32□□□□□ -1.72
RNF40-202ENST00000357890 KRTAP10-10P60014 251 aa4.28□□□□□ -1.72
RNF40-202ENST00000357890 KRTAP19-2Q3LHN2 52 aa4.27□□□□□ -1.73
RNF40-202ENST00000357890 MUC17Q685J3 4493 aa4.25□□□□□ -1.73
RNF40-202ENST00000357890 HERC1Q15751 4861 aa4.23□□□□□ -1.73
RNF40-202ENST00000357890 INE1O15225 51 aa4.21□□□□□ -1.74
RNF40-202ENST00000357890 FAT4Q6V0I7 4981 aa4.21□□□□□ -1.74
RNF40-202ENST00000357890 LCE3AQ5TA76 89 aa4.19□□□□□ -1.74
RNF40-202ENST00000357890 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
RNF40-202ENST00000357890 HMCN2Q8NDA2 5059 aa4.15□□□□□ -1.75
RNF40-202ENST00000357890 FLGP20930 4061 aaPredicted RBP4.14□□□□□ -1.75
RNF40-202ENST00000357890 SPRR2GQ9BYE4 73 aa4.13□□□□□ -1.75
RNF40-202ENST00000357890 MT1HP80294 61 aa4.1□□□□□ -1.75
RNF40-202ENST00000357890 LCE2CQ5TA81 110 aa4.08□□□□□ -1.76
RNF40-202ENST00000357890 KRTAP19-1Q8IUB9 90 aa4.07□□□□□ -1.76
RNF40-202ENST00000357890 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
RNF40-202ENST00000357890 RNF213Q63HN8 5207 aa4.04□□□□□ -1.76
RNF40-202ENST00000357890 MT2AP02795 61 aa4.03□□□□□ -1.76
RNF40-202ENST00000357890 MT1FP04733 61 aa4.02□□□□□ -1.77
RNF40-202ENST00000357890 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
RNF40-202ENST00000357890 KRTAP10-12P60413 245 aa3.97□□□□□ -1.77
RNF40-202ENST00000357890 UBR4Q5T4S7 5183 aa3.95□□□□□ -1.78
RNF40-202ENST00000357890 FSIP2Q5CZC0 6907 aa3.94□□□□□ -1.78
RNF40-202ENST00000357890 KRTAP9-8Q9BYQ0 159 aa3.93□□□□□ -1.78
RNF40-202ENST00000357890 KRTAP19-8Q3LI54 63 aa3.92□□□□□ -1.78
RNF40-202ENST00000357890 LCE2DQ5TA82 110 aaPredicted RBP3.91□□□□□ -1.78
RNF40-202ENST00000357890 OBSCNQ5VST9 7968 aa3.91□□□□□ -1.78
RNF40-202ENST00000357890 KRTAP8-1Q8IUC2 63 aa3.88□□□□□ -1.79
RNF40-202ENST00000357890 LCE2AQ5TA79 106 aaPredicted RBP3.87□□□□□ -1.79
RNF40-202ENST00000357890 MT1BP07438 61 aa3.85□□□□□ -1.79
RNF40-202ENST00000357890 KRTAP10-5P60370 271 aa3.84□□□□□ -1.8
RNF40-202ENST00000357890 MT1XP80297 61 aa3.84□□□□□ -1.8
RNF40-202ENST00000357890 KRTAP10-7P60409 375 aaPredicted RBP3.8□□□□□ -1.8
RNF40-202ENST00000357890 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
RNF40-202ENST00000357890 KMT2DO14686 5537 aa3.76□□□□□ -1.81
RNF40-202ENST00000357890 CRCT1Q9UGL9 99 aa3.76□□□□□ -1.81
RNF40-202ENST00000357890 USH2AO75445 5202 aa3.75□□□□□ -1.81
RNF40-202ENST00000357890 LCE2BO14633 110 aa3.7□□□□□ -1.82
RNF40-202ENST00000357890 KRTAP19-5Q3LI72 72 aa3.7□□□□□ -1.82
RNF40-202ENST00000357890 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
RNF40-202ENST00000357890 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
RNF40-202ENST00000357890 KRTAP9-2Q9BYQ4 174 aa3.63□□□□□ -1.83
RNF40-202ENST00000357890 KRTAP4-8A0A0G2JLE6 195 aa3.61□□□□□ -1.83
RNF40-202ENST00000357890 KRTAP4-8Q9BYQ9 185 aa3.61□□□□□ -1.83
RNF40-202ENST00000357890 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
RNF40-202ENST00000357890 KRTAP4-7Q9BYR0 210 aa3.52□□□□□ -1.85
RNF40-202ENST00000357890 DSTQ03001 7570 aaKnown RBP3.52□□□□□ -1.85
RNF40-202ENST00000357890 KRTAP19-6Q3LI70 58 aa3.49□□□□□ -1.85
RNF40-202ENST00000357890 KRTAP19-4Q3LI73 84 aa3.44□□□□□ -1.86
RNF40-202ENST00000357890 KRTAP12-4P60329 112 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms