RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 VPS13BQ7Z7G8 4022 aa5.29□□□□□ -1.56
PCDH1-202ENST00000357517 KRTAP10-1P60331 282 aa5.29□□□□□ -1.56
PCDH1-202ENST00000357517 KRTAP3-3Q9BYR6 98 aa5.29□□□□□ -1.56
PCDH1-202ENST00000357517 KRTAP10-8P60410 259 aa5.27□□□□□ -1.57
PCDH1-202ENST00000357517 XP32Q5T750 250 aa5.27□□□□□ -1.57
PCDH1-202ENST00000357517 SMR3BP02814 79 aaPredicted RBP5.26□□□□□ -1.57
PCDH1-202ENST00000357517 DNAH5Q8TE73 4624 aa5.22□□□□□ -1.57
PCDH1-202ENST00000357517 FAT2Q9NYQ8 4349 aa5.22□□□□□ -1.57
PCDH1-202ENST00000357517 J3QL48 77 aa5.22□□□□□ -1.57
PCDH1-202ENST00000357517 CAMK2N1Q7Z7J9 78 aa5.16□□□□□ -1.58
PCDH1-202ENST00000357517 MYCBP2O75592 4640 aa5.15□□□□□ -1.58
PCDH1-202ENST00000357517 HYDINQ4G0P3 5121 aa5.13□□□□□ -1.59
PCDH1-202ENST00000357517 M0QZ58 72 aa5.1□□□□□ -1.59
PCDH1-202ENST00000357517 FAT1Q14517 4588 aa5.07□□□□□ -1.6
PCDH1-202ENST00000357517 APOBP04114 4563 aaKnown RBP5.05□□□□□ -1.6
PCDH1-202ENST00000357517 PKHD1P08F94 4074 aa5.04□□□□□ -1.6
PCDH1-202ENST00000357517 R4GN34 69 aa5.04□□□□□ -1.6
PCDH1-202ENST00000357517 PKD1P98161 4303 aa5.03□□□□□ -1.6
PCDH1-202ENST00000357517 RPS29P62273 56 aaKnown RBP5.01□□□□□ -1.61
PCDH1-202ENST00000357517 KRTAP21-3Q3LHN1 58 aa5□□□□□ -1.61
PCDH1-202ENST00000357517 HSPG2P98160 4391 aa4.99□□□□□ -1.61
PCDH1-202ENST00000357517 LRP1Q07954 4544 aaKnown RBP4.98□□□□□ -1.61
PCDH1-202ENST00000357517 DYNC1H1Q14204 4646 aaKnown RBP4.96□□□□□ -1.61
PCDH1-202ENST00000357517 PRO2289Q9P1D8 64 aa4.95□□□□□ -1.62
PCDH1-202ENST00000357517 LPAP08519 4548 aa4.93□□□□□ -1.62
PCDH1-202ENST00000357517 SACSQ9NZJ4 4579 aa4.92□□□□□ -1.62
PCDH1-202ENST00000357517 LORP23490 312 aaPredicted RBP4.86□□□□□ -1.63
PCDH1-202ENST00000357517 FAT3Q8TDW7 4589 aa4.82□□□□□ -1.64
PCDH1-202ENST00000357517 KMT2CQ8NEZ4 4911 aaKnown RBP4.81□□□□□ -1.64
PCDH1-202ENST00000357517 PKHD1L1Q86WI1 4243 aa4.81□□□□□ -1.64
PCDH1-202ENST00000357517 KRTAP10-4P60372 401 aaPredicted RBP4.78□□□□□ -1.64
PCDH1-202ENST00000357517 PP632Q6XCG6 107 aa4.78□□□□□ -1.64
PCDH1-202ENST00000357517 LRP2P98164 4655 aa4.77□□□□□ -1.65
PCDH1-202ENST00000357517 A0A1B0GVY2 172 aa4.71□□□□□ -1.66
PCDH1-202ENST00000357517 INE1O15225 51 aa4.66□□□□□ -1.66
PCDH1-202ENST00000357517 RYR2Q92736 4967 aa4.64□□□□□ -1.67
PCDH1-202ENST00000357517 TNP1P09430 55 aa4.64□□□□□ -1.67
PCDH1-202ENST00000357517 TNXBP22105 4242 aa4.63□□□□□ -1.67
PCDH1-202ENST00000357517 RYR3Q15413 4870 aa4.63□□□□□ -1.67
PCDH1-202ENST00000357517 Q5VSD8 79 aa4.62□□□□□ -1.67
PCDH1-202ENST00000357517 KIAA1109Q2LD37 5005 aa4.6□□□□□ -1.67
PCDH1-202ENST00000357517 KRTAP17-1Q9BYP8 105 aa4.58□□□□□ -1.68
PCDH1-202ENST00000357517 SPRR5A0A1B0GTR4 108 aa4.57□□□□□ -1.68
PCDH1-202ENST00000357517 RYR1P21817 5038 aa4.57□□□□□ -1.68
PCDH1-202ENST00000357517 EPPK1P58107 5090 aaKnown RBP4.52□□□□□ -1.69
PCDH1-202ENST00000357517 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.69
PCDH1-202ENST00000357517 MT1HL1P0DM35 61 aa4.45□□□□□ -1.7
PCDH1-202ENST00000357517 KRTAP4-5Q9BYR2 181 aa4.45□□□□□ -1.7
PCDH1-202ENST00000357517 MUC2Q02817 5179 aa4.42□□□□□ -1.7
PCDH1-202ENST00000357517 LCE3AQ5TA76 89 aa4.36□□□□□ -1.71
PCDH1-202ENST00000357517 KRTAP4-1Q9BYQ7 146 aa4.31□□□□□ -1.72
PCDH1-202ENST00000357517 HERC2O95714 4834 aa4.28□□□□□ -1.72
PCDH1-202ENST00000357517 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
PCDH1-202ENST00000357517 MUC17Q685J3 4493 aa4.23□□□□□ -1.73
PCDH1-202ENST00000357517 PCLOQ9Y6V0 5065 aa4.19□□□□□ -1.74
PCDH1-202ENST00000357517 BIRC6Q9NR09 4857 aa4.18□□□□□ -1.74
PCDH1-202ENST00000357517 HERC1Q15751 4861 aa4.18□□□□□ -1.74
PCDH1-202ENST00000357517 FAT4Q6V0I7 4981 aa4.14□□□□□ -1.75
PCDH1-202ENST00000357517 FLGP20930 4061 aaPredicted RBP4.09□□□□□ -1.75
PCDH1-202ENST00000357517 KRTAP12-3P60328 96 aa4.09□□□□□ -1.76
PCDH1-202ENST00000357517 HMCN2Q8NDA2 5059 aa4.08□□□□□ -1.76
PCDH1-202ENST00000357517 KRTAP19-2Q3LHN2 52 aa4.08□□□□□ -1.76
PCDH1-202ENST00000357517 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
PCDH1-202ENST00000357517 M0R2T5 61 aa4.05□□□□□ -1.76
PCDH1-202ENST00000357517 KRTAP8-1Q8IUC2 63 aa4.03□□□□□ -1.76
PCDH1-202ENST00000357517 KRTAP10-10P60014 251 aa4.02□□□□□ -1.77
PCDH1-202ENST00000357517 KRTAP10-12P60413 245 aa4.02□□□□□ -1.77
PCDH1-202ENST00000357517 UBR4Q5T4S7 5183 aa3.99□□□□□ -1.77
PCDH1-202ENST00000357517 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
PCDH1-202ENST00000357517 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
PCDH1-202ENST00000357517 KMT2DO14686 5537 aa3.92□□□□□ -1.78
PCDH1-202ENST00000357517 SPRR2GQ9BYE4 73 aa3.9□□□□□ -1.79
PCDH1-202ENST00000357517 KRTAP10-7P60409 375 aaPredicted RBP3.86□□□□□ -1.79
PCDH1-202ENST00000357517 LCE3CQ5T5A8 94 aa3.81□□□□□ -1.8
PCDH1-202ENST00000357517 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
PCDH1-202ENST00000357517 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
PCDH1-202ENST00000357517 LCE2CQ5TA81 110 aa3.8□□□□□ -1.8
PCDH1-202ENST00000357517 MT1XP80297 61 aa3.78□□□□□ -1.8
PCDH1-202ENST00000357517 KRTAP19-5Q3LI72 72 aa3.77□□□□□ -1.81
PCDH1-202ENST00000357517 MT1FP04733 61 aa3.76□□□□□ -1.81
PCDH1-202ENST00000357517 KRTAP4-7Q9BYR0 210 aa3.76□□□□□ -1.81
PCDH1-202ENST00000357517 MT1HP80294 61 aa3.72□□□□□ -1.81
PCDH1-202ENST00000357517 MT2AP02795 61 aa3.72□□□□□ -1.81
PCDH1-202ENST00000357517 USH2AO75445 5202 aa3.7□□□□□ -1.82
PCDH1-202ENST00000357517 MT1BP07438 61 aa3.67□□□□□ -1.82
PCDH1-202ENST00000357517 FSIP2Q5CZC0 6907 aa3.65□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP2-3P0C7H8 128 aa3.65□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP2-4Q9BYR9 128 aa3.65□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP2-1Q9BYU5 128 aa3.65□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP9-8Q9BYQ0 159 aa3.64□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP4-8A0A0G2JLE6 195 aa3.63□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP4-8Q9BYQ9 185 aa3.63□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP12-4P60329 112 aa3.62□□□□□ -1.83
PCDH1-202ENST00000357517 KRTAP19-8Q3LI54 63 aa3.61□□□□□ -1.83
PCDH1-202ENST00000357517 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
PCDH1-202ENST00000357517 CRCT1Q9UGL9 99 aa3.57□□□□□ -1.84
PCDH1-202ENST00000357517 LCE2BO14633 110 aa3.56□□□□□ -1.84
PCDH1-202ENST00000357517 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
PCDH1-202ENST00000357517 DSTQ03001 7570 aaKnown RBP3.5□□□□□ -1.85
PCDH1-202ENST00000357517 FCGBPQ9Y6R7 5405 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms