RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 KRTAP10-6P60371 365 aaPredicted RBP8.26□□□□□ -1.09
RTN3-205ENST00000356000 PKD1P98161 4303 aa8.25□□□□□ -1.09
RTN3-205ENST00000356000 RYR1P21817 5038 aa8.23□□□□□ -1.09
RTN3-205ENST00000356000 PCLOQ9Y6V0 5065 aa8.22□□□□□ -1.09
RTN3-205ENST00000356000 KIAA1109Q2LD37 5005 aa8.22□□□□□ -1.09
RTN3-205ENST00000356000 KRTAP4-5Q9BYR2 181 aa8.19□□□□□ -1.1
RTN3-205ENST00000356000 S4R3F8 94 aa8.17□□□□□ -1.1
RTN3-205ENST00000356000 KRTAP10-2P60368 255 aa8.15□□□□□ -1.11
RTN3-205ENST00000356000 XP32Q5T750 250 aa8.14□□□□□ -1.11
RTN3-205ENST00000356000 HSPG2P98160 4391 aa8.14□□□□□ -1.11
RTN3-205ENST00000356000 KRTAP3-2Q9BYR7 98 aa8.13□□□□□ -1.11
RTN3-205ENST00000356000 Q5VSD8 79 aa8.12□□□□□ -1.11
RTN3-205ENST00000356000 KRTAP1-4P0C5Y4 121 aa8.11□□□□□ -1.11
RTN3-205ENST00000356000 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
RTN3-205ENST00000356000 PKHD1P08F94 4074 aa8.1□□□□□ -1.11
RTN3-205ENST00000356000 KRTAP12-2P59991 146 aa8.09□□□□□ -1.11
RTN3-205ENST00000356000 LRP1BQ9NZR2 4599 aa8.05□□□□□ -1.12
RTN3-205ENST00000356000 ABCA13Q86UQ4 5058 aa8.05□□□□□ -1.12
RTN3-205ENST00000356000 APOBP04114 4563 aaKnown RBP8.05□□□□□ -1.12
RTN3-205ENST00000356000 VPS13BQ7Z7G8 4022 aa8.05□□□□□ -1.12
RTN3-205ENST00000356000 KRTAP10-1P60331 282 aa8.05□□□□□ -1.12
RTN3-205ENST00000356000 KRTAP3-3Q9BYR6 98 aa8.03□□□□□ -1.12
RTN3-205ENST00000356000 SEC61BP60468 96 aaKnown RBP8.01□□□□□ -1.13
RTN3-205ENST00000356000 J3QL48 77 aa8□□□□□ -1.13
RTN3-205ENST00000356000 KRTAP12-1P59990 96 aa7.99□□□□□ -1.13
RTN3-205ENST00000356000 DNAH5Q8TE73 4624 aa7.97□□□□□ -1.13
RTN3-205ENST00000356000 C9orf92A6NGG3 77 aa7.96□□□□□ -1.14
RTN3-205ENST00000356000 RPS29P62273 56 aaKnown RBP7.96□□□□□ -1.14
RTN3-205ENST00000356000 PLAC4Q8WY50 150 aa7.95□□□□□ -1.14
RTN3-205ENST00000356000 SMR3BP02814 79 aaPredicted RBP7.87□□□□□ -1.15
RTN3-205ENST00000356000 KRTAP10-4P60372 401 aaPredicted RBP7.81□□□□□ -1.16
RTN3-205ENST00000356000 PKHD1L1Q86WI1 4243 aa7.78□□□□□ -1.16
RTN3-205ENST00000356000 MYCBP2O75592 4640 aa7.73□□□□□ -1.17
RTN3-205ENST00000356000 M0QZ58 72 aa7.68□□□□□ -1.18
RTN3-205ENST00000356000 FAT1Q14517 4588 aa7.65□□□□□ -1.18
RTN3-205ENST00000356000 HERC1Q15751 4861 aa7.64□□□□□ -1.19
RTN3-205ENST00000356000 MT1HL1P0DM35 61 aa7.62□□□□□ -1.19
RTN3-205ENST00000356000 KRTAP10-8P60410 259 aa7.58□□□□□ -1.2
RTN3-205ENST00000356000 FAT3Q8TDW7 4589 aa7.57□□□□□ -1.2
RTN3-205ENST00000356000 CAMK2N1Q7Z7J9 78 aa7.56□□□□□ -1.2
RTN3-205ENST00000356000 HMCN2Q8NDA2 5059 aa7.52□□□□□ -1.2
RTN3-205ENST00000356000 PP632Q6XCG6 107 aa7.45□□□□□ -1.22
RTN3-205ENST00000356000 PRO2289Q9P1D8 64 aa7.42□□□□□ -1.22
RTN3-205ENST00000356000 TNXBP22105 4242 aa7.39□□□□□ -1.23
RTN3-205ENST00000356000 LRP1Q07954 4544 aaKnown RBP7.37□□□□□ -1.23
RTN3-205ENST00000356000 SPRR5A0A1B0GTR4 108 aa7.32□□□□□ -1.24
RTN3-205ENST00000356000 R4GN34 69 aa7.27□□□□□ -1.25
RTN3-205ENST00000356000 UBR4Q5T4S7 5183 aa7.16□□□□□ -1.26
RTN3-205ENST00000356000 INE1O15225 51 aa7.12□□□□□ -1.27
RTN3-205ENST00000356000 RNF213Q63HN8 5207 aa7.09□□□□□ -1.28
RTN3-205ENST00000356000 LORP23490 312 aaPredicted RBP7.04□□□□□ -1.28
RTN3-205ENST00000356000 LRP2P98164 4655 aa7.04□□□□□ -1.28
RTN3-205ENST00000356000 KRTAP23-1A1A580 65 aa7.02□□□□□ -1.29
RTN3-205ENST00000356000 LCE2AQ5TA79 106 aaPredicted RBP7□□□□□ -1.29
RTN3-205ENST00000356000 KRTAP9-2Q9BYQ4 174 aa6.99□□□□□ -1.29
RTN3-205ENST00000356000 MUC17Q685J3 4493 aa6.97□□□□□ -1.29
RTN3-205ENST00000356000 KRTAP9-6A0A140TA67 174 aa6.9□□□□□ -1.3
RTN3-205ENST00000356000 TNP1P09430 55 aa6.87□□□□□ -1.31
RTN3-205ENST00000356000 LCE2DQ5TA82 110 aaPredicted RBP6.87□□□□□ -1.31
RTN3-205ENST00000356000 LPAP08519 4548 aa6.85□□□□□ -1.31
RTN3-205ENST00000356000 FAT4Q6V0I7 4981 aa6.72□□□□□ -1.33
RTN3-205ENST00000356000 CRCT1Q9UGL9 99 aa6.62□□□□□ -1.35
RTN3-205ENST00000356000 KRTAP4-1Q9BYQ7 146 aa6.54□□□□□ -1.36
RTN3-205ENST00000356000 LCE2CQ5TA81 110 aa6.52□□□□□ -1.37
RTN3-205ENST00000356000 MT1HP80294 61 aa6.49□□□□□ -1.37
RTN3-205ENST00000356000 KRTAP19-2Q3LHN2 52 aa6.48□□□□□ -1.37
RTN3-205ENST00000356000 MUC2Q02817 5179 aa6.45□□□□□ -1.38
RTN3-205ENST00000356000 FLGP20930 4061 aaPredicted RBP6.41□□□□□ -1.38
RTN3-205ENST00000356000 LCE3AQ5TA76 89 aa6.41□□□□□ -1.38
RTN3-205ENST00000356000 M0R2T5 61 aa6.34□□□□□ -1.39
RTN3-205ENST00000356000 KRTAP8-1Q8IUC2 63 aa6.28□□□□□ -1.4
RTN3-205ENST00000356000 KRTAP10-10P60014 251 aa6.23□□□□□ -1.41
RTN3-205ENST00000356000 KRTAP10-12P60413 245 aa6.21□□□□□ -1.42
RTN3-205ENST00000356000 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.15□□□□□ -1.42
RTN3-205ENST00000356000 KRTAP9-7A8MTY7 169 aa6.15□□□□□ -1.43
RTN3-205ENST00000356000 KRTAP9-8Q9BYQ0 159 aa6.1□□□□□ -1.43
RTN3-205ENST00000356000 KRTAP12-3P60328 96 aa6.06□□□□□ -1.44
RTN3-205ENST00000356000 SPRR2GQ9BYE4 73 aa6.06□□□□□ -1.44
RTN3-205ENST00000356000 MT2AP02795 61 aa5.99□□□□□ -1.45
RTN3-205ENST00000356000 KRTAP19-1Q8IUB9 90 aa5.98□□□□□ -1.45
RTN3-205ENST00000356000 KRTAP10-5P60370 271 aa5.95□□□□□ -1.46
RTN3-205ENST00000356000 KRTAP9-3Q9BYQ3 159 aa5.94□□□□□ -1.46
RTN3-205ENST00000356000 KRTAP19-6Q3LI70 58 aa5.91□□□□□ -1.46
RTN3-205ENST00000356000 MT1FP04733 61 aa5.89□□□□□ -1.47
RTN3-205ENST00000356000 LCE2BO14633 110 aa5.86□□□□□ -1.47
RTN3-205ENST00000356000 KRTAP6-3Q3LI67 103 aa5.82□□□□□ -1.48
RTN3-205ENST00000356000 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
RTN3-205ENST00000356000 USH2AO75445 5202 aa5.79□□□□□ -1.48
RTN3-205ENST00000356000 KRTAP2-3P0C7H8 128 aa5.78□□□□□ -1.48
RTN3-205ENST00000356000 KRTAP2-4Q9BYR9 128 aa5.78□□□□□ -1.48
RTN3-205ENST00000356000 KRTAP2-1Q9BYU5 128 aa5.78□□□□□ -1.48
RTN3-205ENST00000356000 LCE3CQ5T5A8 94 aa5.77□□□□□ -1.49
RTN3-205ENST00000356000 SSPOA2VEC9 5147 aa5.73□□□□□ -1.49
RTN3-205ENST00000356000 MT1XP80297 61 aa5.71□□□□□ -1.5
RTN3-205ENST00000356000 FCGBPQ9Y6R7 5405 aaPredicted RBP5.7□□□□□ -1.5
RTN3-205ENST00000356000 KRTAP9-6A8MVA2 160 aa5.66□□□□□ -1.5
RTN3-205ENST00000356000 KRTAP19-8Q3LI54 63 aa5.64□□□□□ -1.51
RTN3-205ENST00000356000 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
RTN3-205ENST00000356000 MT1BP07438 61 aa5.54□□□□□ -1.52
RTN3-205ENST00000356000 KRTAP19-5Q3LI72 72 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms