RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 KRTAP25-1Q3LHN0 102 aa12.64□□□□□ -0.39
CPNE1-202ENST00000352393 LRP1Q07954 4544 aaKnown RBP12.61□□□□□ -0.39
CPNE1-202ENST00000352393 K7ERS5 55 aa12.59□□□□□ -0.39
CPNE1-202ENST00000352393 KRTAP10-6P60371 365 aaPredicted RBP12.59□□□□□ -0.39
CPNE1-202ENST00000352393 XP32Q5T750 250 aa12.55□□□□□ -0.4
CPNE1-202ENST00000352393 HSPG2P98160 4391 aa12.54□□□□□ -0.4
CPNE1-202ENST00000352393 Q5VSD8 79 aa12.5□□□□□ -0.41
CPNE1-202ENST00000352393 KRTAP3-2Q9BYR7 98 aa12.5□□□□□ -0.41
CPNE1-202ENST00000352393 KRTAP13-4Q3LI77 160 aa12.47□□□□□ -0.41
CPNE1-202ENST00000352393 S4R3F8 94 aa12.47□□□□□ -0.41
CPNE1-202ENST00000352393 DMBT1Q9UGM3 2413 aaPredicted RBP12.44□□□□□ -0.42
CPNE1-202ENST00000352393 RYR1P21817 5038 aa12.4□□□□□ -0.42
CPNE1-202ENST00000352393 ROMO1P60602 79 aa12.38□□□□□ -0.43
CPNE1-202ENST00000352393 CRIPTQ9P021 101 aa12.33□□□□□ -0.44
CPNE1-202ENST00000352393 EPPK1P58107 5090 aaKnown RBP12.33□□□□□ -0.44
CPNE1-202ENST00000352393 MYCBP2O75592 4640 aa12.32□□□□□ -0.44
CPNE1-202ENST00000352393 A0A0D9SG42 100 aa12.31□□□□□ -0.44
CPNE1-202ENST00000352393 P0C880 135 aa12.29□□□□□ -0.44
CPNE1-202ENST00000352393 KRTAP17-1Q9BYP8 105 aa12.27□□□□□ -0.45
CPNE1-202ENST00000352393 MT1HL1P0DM35 61 aa12.23□□□□□ -0.45
CPNE1-202ENST00000352393 KIAA1109Q2LD37 5005 aa12.17□□□□□ -0.46
CPNE1-202ENST00000352393 TPRXLQ17RH7 258 aa12.07□□□□□ -0.48
CPNE1-202ENST00000352393 KRTAP12-2P59991 146 aa12.07□□□□□ -0.48
CPNE1-202ENST00000352393 KRTAP12-1P59990 96 aa11.99□□□□□ -0.49
CPNE1-202ENST00000352393 LPAP08519 4548 aa11.98□□□□□ -0.49
CPNE1-202ENST00000352393 BIRC6Q9NR09 4857 aa11.98□□□□□ -0.49
CPNE1-202ENST00000352393 H3BS24 57 aa11.95□□□□□ -0.5
CPNE1-202ENST00000352393 LRP2P98164 4655 aa11.93□□□□□ -0.5
CPNE1-202ENST00000352393 C10orf95Q9H7T3 257 aa11.92□□□□□ -0.5
CPNE1-202ENST00000352393 M0QZ58 72 aa11.9□□□□□ -0.5
CPNE1-202ENST00000352393 SPINT4Q6UDR6 99 aa11.89□□□□□ -0.51
CPNE1-202ENST00000352393 KRTAP4-5Q9BYR2 181 aa11.72□□□□□ -0.53
CPNE1-202ENST00000352393 HERC2O95714 4834 aa11.71□□□□□ -0.53
CPNE1-202ENST00000352393 ABCA13Q86UQ4 5058 aa11.62□□□□□ -0.55
CPNE1-202ENST00000352393 KRTAP15-1Q3LI76 137 aa11.57□□□□□ -0.56
CPNE1-202ENST00000352393 R4GN34 69 aa11.54□□□□□ -0.56
CPNE1-202ENST00000352393 MUC17Q685J3 4493 aa11.52□□□□□ -0.57
CPNE1-202ENST00000352393 SEC61BP60468 96 aaKnown RBP11.52□□□□□ -0.57
CPNE1-202ENST00000352393 LORP23490 312 aaPredicted RBP11.42□□□□□ -0.58
CPNE1-202ENST00000352393 KRTAP4-1Q9BYQ7 146 aa11.42□□□□□ -0.58
CPNE1-202ENST00000352393 PCLOQ9Y6V0 5065 aa11.41□□□□□ -0.58
CPNE1-202ENST00000352393 J3QL48 77 aa11.39□□□□□ -0.59
CPNE1-202ENST00000352393 KRTAP19-2Q3LHN2 52 aa11.3□□□□□ -0.6
CPNE1-202ENST00000352393 NDUFAF8A1L188 74 aa11.26□□□□□ -0.61
CPNE1-202ENST00000352393 HERC1Q15751 4861 aa10.99□□□□□ -0.65
CPNE1-202ENST00000352393 CAMK2N1Q7Z7J9 78 aa10.97□□□□□ -0.65
CPNE1-202ENST00000352393 PLAC4Q8WY50 150 aa10.97□□□□□ -0.65
CPNE1-202ENST00000352393 PP632Q6XCG6 107 aa10.93□□□□□ -0.66
CPNE1-202ENST00000352393 FLGP20930 4061 aaPredicted RBP10.91□□□□□ -0.66
CPNE1-202ENST00000352393 HMCN2Q8NDA2 5059 aa10.75□□□□□ -0.69
CPNE1-202ENST00000352393 MUC2Q02817 5179 aa10.75□□□□□ -0.69
CPNE1-202ENST00000352393 TNP1P09430 55 aa10.6□□□□□ -0.71
CPNE1-202ENST00000352393 KRTAP23-1A1A580 65 aa10.57□□□□□ -0.72
CPNE1-202ENST00000352393 LCE2CQ5TA81 110 aa10.52□□□□□ -0.72
CPNE1-202ENST00000352393 LUZP6Q538Z0 58 aa10.46□□□□□ -0.74
CPNE1-202ENST00000352393 SPRR2GQ9BYE4 73 aa10.44□□□□□ -0.74
CPNE1-202ENST00000352393 KRTAP19-1Q8IUB9 90 aa10.37□□□□□ -0.75
CPNE1-202ENST00000352393 UBR4Q5T4S7 5183 aa10.35□□□□□ -0.75
CPNE1-202ENST00000352393 SPRR5A0A1B0GTR4 108 aa10.3□□□□□ -0.76
CPNE1-202ENST00000352393 FAT4Q6V0I7 4981 aa10.28□□□□□ -0.76
CPNE1-202ENST00000352393 RNF213Q63HN8 5207 aa10.24□□□□□ -0.77
CPNE1-202ENST00000352393 MT1HP80294 61 aa10.2□□□□□ -0.78
CPNE1-202ENST00000352393 M0R2T5 61 aa10.17□□□□□ -0.78
CPNE1-202ENST00000352393 MT2AP02795 61 aa10.1□□□□□ -0.79
CPNE1-202ENST00000352393 MT1FP04733 61 aa10.1□□□□□ -0.79
CPNE1-202ENST00000352393 LCE3AQ5TA76 89 aa10.06□□□□□ -0.8
CPNE1-202ENST00000352393 KRTAP10-10P60014 251 aa10.03□□□□□ -0.8
CPNE1-202ENST00000352393 A0A0A0MQY5 61 aa10.01□□□□□ -0.81
CPNE1-202ENST00000352393 KRTAP9-8Q9BYQ0 159 aa10□□□□□ -0.81
CPNE1-202ENST00000352393 KRTAP19-8Q3LI54 63 aa9.97□□□□□ -0.81
CPNE1-202ENST00000352393 KRTAP8-1Q8IUC2 63 aa9.84□□□□□ -0.83
CPNE1-202ENST00000352393 MT1BP07438 61 aa9.82□□□□□ -0.84
CPNE1-202ENST00000352393 KRTAP10-5P60370 271 aa9.8□□□□□ -0.84
CPNE1-202ENST00000352393 MT1XP80297 61 aa9.78□□□□□ -0.84
CPNE1-202ENST00000352393 KRTAP10-12P60413 245 aa9.62□□□□□ -0.87
CPNE1-202ENST00000352393 KRTAP9-3Q9BYQ3 159 aa9.58□□□□□ -0.88
CPNE1-202ENST00000352393 KRTAP12-3P60328 96 aa9.56□□□□□ -0.88
CPNE1-202ENST00000352393 KRTAP10-7P60409 375 aaPredicted RBP9.5□□□□□ -0.89
CPNE1-202ENST00000352393 LCE2AQ5TA79 106 aaPredicted RBP9.38□□□□□ -0.91
CPNE1-202ENST00000352393 PRO2289Q9P1D8 64 aa9.35□□□□□ -0.91
CPNE1-202ENST00000352393 LCE2BO14633 110 aa9.16□□□□□ -0.94
CPNE1-202ENST00000352393 KRTAP19-5Q3LI72 72 aa9.13□□□□□ -0.95
CPNE1-202ENST00000352393 INE1O15225 51 aa9.11□□□□□ -0.95
CPNE1-202ENST00000352393 LCE3CQ5T5A8 94 aa9.02□□□□□ -0.96
CPNE1-202ENST00000352393 KRTAP4-8A0A0G2JLE6 195 aa8.84□□□□□ -0.99
CPNE1-202ENST00000352393 KRTAP4-8Q9BYQ9 185 aa8.84□□□□□ -0.99
CPNE1-202ENST00000352393 USH2AO75445 5202 aa8.84□□□□□ -0.99
CPNE1-202ENST00000352393 KMT2DO14686 5537 aa8.79□□□□□ -1
CPNE1-202ENST00000352393 KRTAP9-6A8MVA2 160 aa8.72□□□□□ -1.01
CPNE1-202ENST00000352393 KRTAP19-7Q3SYF9 63 aa8.72□□□□□ -1.01
CPNE1-202ENST00000352393 KRTAP9-2Q9BYQ4 174 aa8.68□□□□□ -1.02
CPNE1-202ENST00000352393 LCE2DQ5TA82 110 aaPredicted RBP8.64□□□□□ -1.03
CPNE1-202ENST00000352393 FSIP2Q5CZC0 6907 aa8.58□□□□□ -1.04
CPNE1-202ENST00000352393 KRTAP4-7Q9BYR0 210 aa8.53□□□□□ -1.04
CPNE1-202ENST00000352393 KRTAP19-4Q3LI73 84 aa8.53□□□□□ -1.04
CPNE1-202ENST00000352393 KRTAP2-3P0C7H8 128 aa8.49□□□□□ -1.05
CPNE1-202ENST00000352393 KRTAP2-4Q9BYR9 128 aa8.49□□□□□ -1.05
CPNE1-202ENST00000352393 KRTAP2-1Q9BYU5 128 aa8.49□□□□□ -1.05
CPNE1-202ENST00000352393 MT1LQ93083 61 aa8.48□□□□□ -1.05
CPNE1-202ENST00000352393 MT1EP04732 61 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms