RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 MYCBP2O75592 4640 aa4.85□□□□□ -1.63
RTN3-202ENST00000339997 A8MUU9 505 aa4.84□□□□□ -1.64
RTN3-202ENST00000339997 P0C880 135 aa4.82□□□□□ -1.64
RTN3-202ENST00000339997 KRTAP13-1Q8IUC0 172 aa4.81□□□□□ -1.64
RTN3-202ENST00000339997 PKHD1L1Q86WI1 4243 aa4.79□□□□□ -1.64
RTN3-202ENST00000339997 LRP1BQ9NZR2 4599 aa4.77□□□□□ -1.65
RTN3-202ENST00000339997 FAT3Q8TDW7 4589 aa4.74□□□□□ -1.65
RTN3-202ENST00000339997 MEGF8Q7Z7M0 2845 aa4.74□□□□□ -1.65
RTN3-202ENST00000339997 PP632Q6XCG6 107 aa4.72□□□□□ -1.65
RTN3-202ENST00000339997 KRTAP10-8P60410 259 aa4.71□□□□□ -1.65
RTN3-202ENST00000339997 H0YAA0 97 aa4.7□□□□□ -1.66
RTN3-202ENST00000339997 KMT2CQ8NEZ4 4911 aaKnown RBP4.69□□□□□ -1.66
RTN3-202ENST00000339997 TNXBP22105 4242 aa4.69□□□□□ -1.66
RTN3-202ENST00000339997 LPAP08519 4548 aa4.66□□□□□ -1.66
RTN3-202ENST00000339997 A0A1B0GVY2 172 aa4.61□□□□□ -1.67
RTN3-202ENST00000339997 KRTAP1-4P0C5Y4 121 aa4.6□□□□□ -1.67
RTN3-202ENST00000339997 PRO2289Q9P1D8 64 aa4.6□□□□□ -1.67
RTN3-202ENST00000339997 HSPG2P98160 4391 aa4.6□□□□□ -1.67
RTN3-202ENST00000339997 APOBP04114 4563 aaKnown RBP4.6□□□□□ -1.67
RTN3-202ENST00000339997 RYR3Q15413 4870 aa4.59□□□□□ -1.67
RTN3-202ENST00000339997 RPS29P62273 56 aaKnown RBP4.59□□□□□ -1.68
RTN3-202ENST00000339997 DYNC1H1Q14204 4646 aaKnown RBP4.53□□□□□ -1.68
RTN3-202ENST00000339997 XP32Q5T750 250 aa4.52□□□□□ -1.69
RTN3-202ENST00000339997 KRTAP10-10P60014 251 aa4.49□□□□□ -1.69
RTN3-202ENST00000339997 KRTAP13-3Q3SY46 172 aa4.42□□□□□ -1.7
RTN3-202ENST00000339997 ABCA13Q86UQ4 5058 aa4.41□□□□□ -1.7
RTN3-202ENST00000339997 KRTAP12-2P59991 146 aa4.41□□□□□ -1.7
RTN3-202ENST00000339997 RYR2Q92736 4967 aa4.41□□□□□ -1.7
RTN3-202ENST00000339997 RYR1P21817 5038 aa4.4□□□□□ -1.71
RTN3-202ENST00000339997 TPRXLQ17RH7 258 aa4.38□□□□□ -1.71
RTN3-202ENST00000339997 FAT1Q14517 4588 aa4.37□□□□□ -1.71
RTN3-202ENST00000339997 LRP1Q07954 4544 aaKnown RBP4.36□□□□□ -1.71
RTN3-202ENST00000339997 KRTAP3-1Q9BYR8 98 aa4.32□□□□□ -1.72
RTN3-202ENST00000339997 KRTAP13-4Q3LI77 160 aa4.29□□□□□ -1.72
RTN3-202ENST00000339997 EPPK1P58107 5090 aaKnown RBP4.28□□□□□ -1.72
RTN3-202ENST00000339997 KRTAP12-1P59990 96 aa4.27□□□□□ -1.73
RTN3-202ENST00000339997 KRTAP10-6P60371 365 aaPredicted RBP4.18□□□□□ -1.74
RTN3-202ENST00000339997 MUC2Q02817 5179 aa4.17□□□□□ -1.74
RTN3-202ENST00000339997 FLGP20930 4061 aaPredicted RBP4.16□□□□□ -1.74
RTN3-202ENST00000339997 MUC17Q685J3 4493 aa4.15□□□□□ -1.75
RTN3-202ENST00000339997 PCLOQ9Y6V0 5065 aa4.13□□□□□ -1.75
RTN3-202ENST00000339997 KRTAP15-1Q3LI76 137 aa4.12□□□□□ -1.75
RTN3-202ENST00000339997 LRP2P98164 4655 aa4.06□□□□□ -1.76
RTN3-202ENST00000339997 KRTAP17-1Q9BYP8 105 aa4.04□□□□□ -1.76
RTN3-202ENST00000339997 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
RTN3-202ENST00000339997 KRTAP3-2Q9BYR7 98 aa4.02□□□□□ -1.77
RTN3-202ENST00000339997 KRTAP3-3Q9BYR6 98 aa4.01□□□□□ -1.77
RTN3-202ENST00000339997 INE1O15225 51 aa3.99□□□□□ -1.77
RTN3-202ENST00000339997 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
RTN3-202ENST00000339997 KIAA1109Q2LD37 5005 aa3.93□□□□□ -1.78
RTN3-202ENST00000339997 LORP23490 312 aaPredicted RBP3.9□□□□□ -1.79
RTN3-202ENST00000339997 BIRC6Q9NR09 4857 aa3.89□□□□□ -1.79
RTN3-202ENST00000339997 MT1HL1P0DM35 61 aa3.87□□□□□ -1.79
RTN3-202ENST00000339997 KRTAP4-5Q9BYR2 181 aa3.87□□□□□ -1.79
RTN3-202ENST00000339997 HERC1Q15751 4861 aa3.86□□□□□ -1.79
RTN3-202ENST00000339997 FAT4Q6V0I7 4981 aa3.83□□□□□ -1.8
RTN3-202ENST00000339997 HERC2O95714 4834 aa3.8□□□□□ -1.8
RTN3-202ENST00000339997 KRTAP10-12P60413 245 aa3.76□□□□□ -1.81
RTN3-202ENST00000339997 KRTAP10-4P60372 401 aaPredicted RBP3.76□□□□□ -1.81
RTN3-202ENST00000339997 UBR4Q5T4S7 5183 aa3.76□□□□□ -1.81
RTN3-202ENST00000339997 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
RTN3-202ENST00000339997 KRTAP12-3P60328 96 aa3.73□□□□□ -1.81
RTN3-202ENST00000339997 KRTAP10-5P60370 271 aa3.73□□□□□ -1.81
RTN3-202ENST00000339997 HMCN2Q8NDA2 5059 aa3.68□□□□□ -1.82
RTN3-202ENST00000339997 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
RTN3-202ENST00000339997 LCE2DQ5TA82 110 aaPredicted RBP3.64□□□□□ -1.83
RTN3-202ENST00000339997 LCE2CQ5TA81 110 aa3.59□□□□□ -1.84
RTN3-202ENST00000339997 KRTAP4-1Q9BYQ7 146 aa3.59□□□□□ -1.84
RTN3-202ENST00000339997 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
RTN3-202ENST00000339997 KRTAP10-7P60409 375 aaPredicted RBP3.56□□□□□ -1.84
RTN3-202ENST00000339997 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
RTN3-202ENST00000339997 KRTAP19-2Q3LHN2 52 aa3.54□□□□□ -1.84
RTN3-202ENST00000339997 SYNE1Q8NF91 8797 aaKnown RBP3.52□□□□□ -1.85
RTN3-202ENST00000339997 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
RTN3-202ENST00000339997 LCE2BO14633 110 aa3.41□□□□□ -1.86
RTN3-202ENST00000339997 FSIP2Q5CZC0 6907 aa3.36□□□□□ -1.87
RTN3-202ENST00000339997 MT2AP02795 61 aa3.36□□□□□ -1.87
RTN3-202ENST00000339997 USH2AO75445 5202 aa3.35□□□□□ -1.87
RTN3-202ENST00000339997 MT1HP80294 61 aa3.35□□□□□ -1.87
RTN3-202ENST00000339997 MT1FP04733 61 aa3.34□□□□□ -1.87
RTN3-202ENST00000339997 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
RTN3-202ENST00000339997 SPRR2GQ9BYE4 73 aa3.28□□□□□ -1.88
RTN3-202ENST00000339997 KMT2DO14686 5537 aa3.28□□□□□ -1.88
RTN3-202ENST00000339997 SPRR2FQ96RM1 72 aa3.27□□□□□ -1.89
RTN3-202ENST00000339997 LCE3CQ5T5A8 94 aa3.24□□□□□ -1.89
RTN3-202ENST00000339997 KRTAP19-1Q8IUB9 90 aa3.2□□□□□ -1.9
RTN3-202ENST00000339997 KRTAP4-8A0A0G2JLE6 195 aa3.16□□□□□ -1.9
RTN3-202ENST00000339997 KRTAP19-4Q3LI73 84 aa3.16□□□□□ -1.9
RTN3-202ENST00000339997 KRTAP4-8Q9BYQ9 185 aa3.16□□□□□ -1.9
RTN3-202ENST00000339997 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
RTN3-202ENST00000339997 KRTAP12-4P60329 112 aa3.11□□□□□ -1.91
RTN3-202ENST00000339997 MT1GP13640 62 aa3.09□□□□□ -1.91
RTN3-202ENST00000339997 MT1XP80297 61 aa3.09□□□□□ -1.91
RTN3-202ENST00000339997 KRTAP4-7Q9BYR0 210 aa3.08□□□□□ -1.92
RTN3-202ENST00000339997 MT1BP07438 61 aa3.03□□□□□ -1.92
RTN3-202ENST00000339997 SPRR2EP22531 72 aa3.02□□□□□ -1.93
RTN3-202ENST00000339997 SPRR2BP35325 72 aa3.02□□□□□ -1.93
RTN3-202ENST00000339997 SPRR2AP35326 72 aa3.02□□□□□ -1.93
RTN3-202ENST00000339997 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
RTN3-202ENST00000339997 SSPOA2VEC9 5147 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms