RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ALMS1Q8TCU4 4167 aa6.24□□□□□ -1.41
USP1-201ENST00000339950 KRTAP10-8P60410 259 aa6.21□□□□□ -1.41
USP1-201ENST00000339950 P0C880 135 aa6.2□□□□□ -1.42
USP1-201ENST00000339950 RPS29P62273 56 aaKnown RBP6.2□□□□□ -1.42
USP1-201ENST00000339950 FAT2Q9NYQ8 4349 aa6.19□□□□□ -1.42
USP1-201ENST00000339950 R4GN34 69 aa6.19□□□□□ -1.42
USP1-201ENST00000339950 XP32Q5T750 250 aa6.18□□□□□ -1.42
USP1-201ENST00000339950 CAMK2N1Q7Z7J9 78 aa6.18□□□□□ -1.42
USP1-201ENST00000339950 A0A1B0GVY2 172 aa6.16□□□□□ -1.42
USP1-201ENST00000339950 M0QZ58 72 aa6.15□□□□□ -1.42
USP1-201ENST00000339950 KIAA1109Q2LD37 5005 aa6.15□□□□□ -1.43
USP1-201ENST00000339950 SACSQ9NZJ4 4579 aa6.14□□□□□ -1.43
USP1-201ENST00000339950 APOBP04114 4563 aaKnown RBP6.11□□□□□ -1.43
USP1-201ENST00000339950 KMT2CQ8NEZ4 4911 aaKnown RBP6.09□□□□□ -1.43
USP1-201ENST00000339950 KRTAP13-4Q3LI77 160 aa6.08□□□□□ -1.44
USP1-201ENST00000339950 RYR1P21817 5038 aa6.08□□□□□ -1.44
USP1-201ENST00000339950 KRTAP10-4P60372 401 aaPredicted RBP6.05□□□□□ -1.44
USP1-201ENST00000339950 A0A0A0MQY5 61 aa6.01□□□□□ -1.45
USP1-201ENST00000339950 TPRXLQ17RH7 258 aa5.99□□□□□ -1.45
USP1-201ENST00000339950 PKD1P98161 4303 aa5.99□□□□□ -1.45
USP1-201ENST00000339950 RYR3Q15413 4870 aa5.98□□□□□ -1.45
USP1-201ENST00000339950 KRTAP10-6P60371 365 aaPredicted RBP5.97□□□□□ -1.45
USP1-201ENST00000339950 KRTAP12-2P59991 146 aa5.96□□□□□ -1.46
USP1-201ENST00000339950 KRTAP4-5Q9BYR2 181 aa5.95□□□□□ -1.46
USP1-201ENST00000339950 LRP2P98164 4655 aa5.94□□□□□ -1.46
USP1-201ENST00000339950 KRTAP3-3Q9BYR6 98 aa5.93□□□□□ -1.46
USP1-201ENST00000339950 KRTAP17-1Q9BYP8 105 aa5.91□□□□□ -1.46
USP1-201ENST00000339950 KRTAP21-3Q3LHN1 58 aa5.87□□□□□ -1.47
USP1-201ENST00000339950 HSPG2P98160 4391 aa5.87□□□□□ -1.47
USP1-201ENST00000339950 M0R2T5 61 aa5.87□□□□□ -1.47
USP1-201ENST00000339950 SEC61BP60468 96 aaKnown RBP5.87□□□□□ -1.47
USP1-201ENST00000339950 MT1HL1P0DM35 61 aa5.86□□□□□ -1.47
USP1-201ENST00000339950 PLAC4Q8WY50 150 aa5.86□□□□□ -1.47
USP1-201ENST00000339950 KRTAP3-2Q9BYR7 98 aa5.86□□□□□ -1.47
USP1-201ENST00000339950 LPAP08519 4548 aa5.81□□□□□ -1.48
USP1-201ENST00000339950 RYR2Q92736 4967 aa5.81□□□□□ -1.48
USP1-201ENST00000339950 KRTAP12-1P59990 96 aa5.8□□□□□ -1.48
USP1-201ENST00000339950 EPPK1P58107 5090 aaKnown RBP5.75□□□□□ -1.49
USP1-201ENST00000339950 LORP23490 312 aaPredicted RBP5.71□□□□□ -1.49
USP1-201ENST00000339950 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
USP1-201ENST00000339950 MUC2Q02817 5179 aa5.68□□□□□ -1.5
USP1-201ENST00000339950 KRTAP15-1Q3LI76 137 aa5.63□□□□□ -1.51
USP1-201ENST00000339950 ABCA13Q86UQ4 5058 aa5.62□□□□□ -1.51
USP1-201ENST00000339950 KRTAP4-1Q9BYQ7 146 aa5.58□□□□□ -1.52
USP1-201ENST00000339950 TNP1P09430 55 aa5.57□□□□□ -1.52
USP1-201ENST00000339950 HERC2O95714 4834 aa5.56□□□□□ -1.52
USP1-201ENST00000339950 TNXBP22105 4242 aa5.55□□□□□ -1.52
USP1-201ENST00000339950 PP632Q6XCG6 107 aa5.45□□□□□ -1.54
USP1-201ENST00000339950 RNF213Q63HN8 5207 aa5.42□□□□□ -1.54
USP1-201ENST00000339950 FAT4Q6V0I7 4981 aa5.42□□□□□ -1.54
USP1-201ENST00000339950 KRTAP10-10P60014 251 aa5.41□□□□□ -1.54
USP1-201ENST00000339950 HERC1Q15751 4861 aa5.38□□□□□ -1.55
USP1-201ENST00000339950 PCLOQ9Y6V0 5065 aa5.28□□□□□ -1.56
USP1-201ENST00000339950 UBR4Q5T4S7 5183 aa5.2□□□□□ -1.58
USP1-201ENST00000339950 FSIP2Q5CZC0 6907 aa5.08□□□□□ -1.6
USP1-201ENST00000339950 HMCN2Q8NDA2 5059 aa5.07□□□□□ -1.6
USP1-201ENST00000339950 MUC17Q685J3 4493 aa5.04□□□□□ -1.6
USP1-201ENST00000339950 LCE3AQ5TA76 89 aa5.04□□□□□ -1.6
USP1-201ENST00000339950 BIRC6Q9NR09 4857 aa5□□□□□ -1.61
USP1-201ENST00000339950 KRTAP19-2Q3LHN2 52 aa4.97□□□□□ -1.61
USP1-201ENST00000339950 MT1FP04733 61 aa4.96□□□□□ -1.62
USP1-201ENST00000339950 MT1HP80294 61 aa4.95□□□□□ -1.62
USP1-201ENST00000339950 FLGP20930 4061 aaPredicted RBP4.93□□□□□ -1.62
USP1-201ENST00000339950 MT2AP02795 61 aa4.91□□□□□ -1.62
USP1-201ENST00000339950 KRTAP19-1Q8IUB9 90 aa4.9□□□□□ -1.62
USP1-201ENST00000339950 USH2AO75445 5202 aa4.9□□□□□ -1.62
USP1-201ENST00000339950 LCE2CQ5TA81 110 aa4.87□□□□□ -1.63
USP1-201ENST00000339950 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
USP1-201ENST00000339950 KRTAP10-12P60413 245 aa4.82□□□□□ -1.64
USP1-201ENST00000339950 SPRR2GQ9BYE4 73 aa4.79□□□□□ -1.64
USP1-201ENST00000339950 KMT2DO14686 5537 aa4.79□□□□□ -1.64
USP1-201ENST00000339950 KRTAP12-3P60328 96 aa4.79□□□□□ -1.64
USP1-201ENST00000339950 INE1O15225 51 aa4.78□□□□□ -1.64
USP1-201ENST00000339950 OBSCNQ5VST9 7968 aa4.75□□□□□ -1.65
USP1-201ENST00000339950 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
USP1-201ENST00000339950 KRTAP23-1A1A580 65 aa4.71□□□□□ -1.66
USP1-201ENST00000339950 KRTAP9-8Q9BYQ0 159 aa4.71□□□□□ -1.66
USP1-201ENST00000339950 CRCT1Q9UGL9 99 aa4.65□□□□□ -1.67
USP1-201ENST00000339950 MT1BP07438 61 aa4.64□□□□□ -1.67
USP1-201ENST00000339950 MT1XP80297 61 aa4.63□□□□□ -1.67
USP1-201ENST00000339950 KRTAP4-8A0A0G2JLE6 195 aa4.62□□□□□ -1.67
USP1-201ENST00000339950 KRTAP4-8Q9BYQ9 185 aa4.62□□□□□ -1.67
USP1-201ENST00000339950 KRTAP10-5P60370 271 aa4.61□□□□□ -1.67
USP1-201ENST00000339950 DSTQ03001 7570 aaKnown RBP4.6□□□□□ -1.67
USP1-201ENST00000339950 SYNE1Q8NF91 8797 aaKnown RBP4.58□□□□□ -1.68
USP1-201ENST00000339950 SPRR5A0A1B0GTR4 108 aa4.57□□□□□ -1.68
USP1-201ENST00000339950 KRTAP19-5Q3LI72 72 aa4.56□□□□□ -1.68
USP1-201ENST00000339950 KRTAP8-1Q8IUC2 63 aa4.55□□□□□ -1.68
USP1-201ENST00000339950 KRTAP19-8Q3LI54 63 aa4.49□□□□□ -1.69
USP1-201ENST00000339950 KRTAP4-7Q9BYR0 210 aa4.48□□□□□ -1.69
USP1-201ENST00000339950 KRTAP9-3Q9BYQ3 159 aa4.48□□□□□ -1.69
USP1-201ENST00000339950 FCGBPQ9Y6R7 5405 aaPredicted RBP4.48□□□□□ -1.69
USP1-201ENST00000339950 LCE2BO14633 110 aa4.46□□□□□ -1.7
USP1-201ENST00000339950 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.72
USP1-201ENST00000339950 MUC12Q9UKN1 5478 aa4.28□□□□□ -1.72
USP1-201ENST00000339950 KRTAP4-3Q9BYR4 195 aa4.19□□□□□ -1.74
USP1-201ENST00000339950 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
USP1-201ENST00000339950 LOC100996750A0A140TA64 210 aa4.15□□□□□ -1.74
USP1-201ENST00000339950 KRTAP9-6A8MVA2 160 aa4.15□□□□□ -1.75
USP1-201ENST00000339950 MT1GP13640 62 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms