RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 LINC01558Q9Y6Z2 57 aa8.29□□□□□ -1.08
LIMS1-202ENST00000338045 RPL37P61927 97 aaKnown RBP8.27□□□□□ -1.09
LIMS1-202ENST00000338045 IGKV2D-30A0A075B6S6 120 aa8.24□□□□□ -1.09
LIMS1-202ENST00000338045 HRES1P13985 223 aa8.19□□□□□ -1.1
LIMS1-202ENST00000338045 PCLOQ9Y6V0 5065 aa8.18□□□□□ -1.1
LIMS1-202ENST00000338045 LPAP08519 4548 aa8.16□□□□□ -1.1
LIMS1-202ENST00000338045 SPINK7P58062 85 aa8.15□□□□□ -1.1
LIMS1-202ENST00000338045 LRP2P98164 4655 aa8.15□□□□□ -1.11
LIMS1-202ENST00000338045 ADM2Q7Z4H4 148 aa8.13□□□□□ -1.11
LIMS1-202ENST00000338045 COA5Q86WW8 74 aa8.13□□□□□ -1.11
LIMS1-202ENST00000338045 DMAC1Q96GE9 116 aa8.1□□□□□ -1.11
LIMS1-202ENST00000338045 ROMO1P60602 79 aa8.07□□□□□ -1.12
LIMS1-202ENST00000338045 ACYP2P14621 99 aa8.03□□□□□ -1.12
LIMS1-202ENST00000338045 HERC1Q15751 4861 aa8.03□□□□□ -1.12
LIMS1-202ENST00000338045 CSAG1Q6PB30 78 aa8.02□□□□□ -1.12
LIMS1-202ENST00000338045 SEC61BP60468 96 aaKnown RBP7.98□□□□□ -1.13
LIMS1-202ENST00000338045 KRTAP3-1Q9BYR8 98 aa7.97□□□□□ -1.13
LIMS1-202ENST00000338045 HMCN2Q8NDA2 5059 aa7.96□□□□□ -1.13
LIMS1-202ENST00000338045 COX6B2Q6YFQ2 88 aa7.96□□□□□ -1.14
LIMS1-202ENST00000338045 KRTAP3-3Q9BYR6 98 aa7.96□□□□□ -1.14
LIMS1-202ENST00000338045 KRTAP3-2Q9BYR7 98 aa7.96□□□□□ -1.14
LIMS1-202ENST00000338045 SPATA8Q6RVD6 105 aa7.94□□□□□ -1.14
LIMS1-202ENST00000338045 MUC17Q685J3 4493 aa7.91□□□□□ -1.14
LIMS1-202ENST00000338045 MIR22HGQ0VDD5 57 aa7.89□□□□□ -1.15
LIMS1-202ENST00000338045 KRTAP4-1Q9BYQ7 146 aa7.83□□□□□ -1.16
LIMS1-202ENST00000338045 KRTAP25-1Q3LHN0 102 aa7.81□□□□□ -1.16
LIMS1-202ENST00000338045 P0C880 135 aa7.75□□□□□ -1.17
LIMS1-202ENST00000338045 UQCR11O14957 56 aa7.75□□□□□ -1.17
LIMS1-202ENST00000338045 H1FX-AS1Q4G0G2 97 aa7.75□□□□□ -1.17
LIMS1-202ENST00000338045 S4R3F8 94 aa7.68□□□□□ -1.18
LIMS1-202ENST00000338045 KRTAP19-2Q3LHN2 52 aa7.66□□□□□ -1.18
LIMS1-202ENST00000338045 A0A1B0GU69 56 aa7.66□□□□□ -1.18
LIMS1-202ENST00000338045 MUC2Q02817 5179 aa7.63□□□□□ -1.19
LIMS1-202ENST00000338045 K7ERS5 55 aa7.58□□□□□ -1.2
LIMS1-202ENST00000338045 UBR4Q5T4S7 5183 aa7.54□□□□□ -1.2
LIMS1-202ENST00000338045 LUZP6Q538Z0 58 aa7.53□□□□□ -1.2
LIMS1-202ENST00000338045 RNF213Q63HN8 5207 aa7.5□□□□□ -1.21
LIMS1-202ENST00000338045 NDUFAF8A1L188 74 aa7.49□□□□□ -1.21
LIMS1-202ENST00000338045 FLGP20930 4061 aaPredicted RBP7.46□□□□□ -1.22
LIMS1-202ENST00000338045 LCE2CQ5TA81 110 aa7.45□□□□□ -1.22
LIMS1-202ENST00000338045 KRTAP10-6P60371 365 aaPredicted RBP7.41□□□□□ -1.22
LIMS1-202ENST00000338045 H0YAA0 97 aa7.4□□□□□ -1.23
LIMS1-202ENST00000338045 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
LIMS1-202ENST00000338045 A0A1B0GU33 70 aa7.35□□□□□ -1.23
LIMS1-202ENST00000338045 SPINT4Q6UDR6 99 aa7.35□□□□□ -1.23
LIMS1-202ENST00000338045 FAT4Q6V0I7 4981 aa7.35□□□□□ -1.23
LIMS1-202ENST00000338045 MT1HP80294 61 aa7.28□□□□□ -1.24
LIMS1-202ENST00000338045 KRTAP13-4Q3LI77 160 aa7.21□□□□□ -1.26
LIMS1-202ENST00000338045 M0R2T5 61 aa7.16□□□□□ -1.26
LIMS1-202ENST00000338045 M0QZ58 72 aa7.15□□□□□ -1.26
LIMS1-202ENST00000338045 LORP23490 312 aaPredicted RBP7.12□□□□□ -1.27
LIMS1-202ENST00000338045 CAMK2N1Q7Z7J9 78 aa7.08□□□□□ -1.28
LIMS1-202ENST00000338045 R4GN34 69 aa7.08□□□□□ -1.28
LIMS1-202ENST00000338045 KRTAP9-8Q9BYQ0 159 aa7.04□□□□□ -1.28
LIMS1-202ENST00000338045 CRIPTQ9P021 101 aa7.04□□□□□ -1.28
LIMS1-202ENST00000338045 A0A0D9SG42 100 aa7.02□□□□□ -1.28
LIMS1-202ENST00000338045 MT2AP02795 61 aa7□□□□□ -1.29
LIMS1-202ENST00000338045 LCE2AQ5TA79 106 aaPredicted RBP6.99□□□□□ -1.29
LIMS1-202ENST00000338045 MT1FP04733 61 aa6.97□□□□□ -1.29
LIMS1-202ENST00000338045 KRTAP12-1P59990 96 aa6.94□□□□□ -1.3
LIMS1-202ENST00000338045 KRTAP10-10P60014 251 aa6.92□□□□□ -1.3
LIMS1-202ENST00000338045 KRTAP12-2P59991 146 aa6.91□□□□□ -1.3
LIMS1-202ENST00000338045 SPRR2GQ9BYE4 73 aa6.9□□□□□ -1.3
LIMS1-202ENST00000338045 LCE2BO14633 110 aa6.88□□□□□ -1.31
LIMS1-202ENST00000338045 KRTAP19-1Q8IUB9 90 aa6.87□□□□□ -1.31
LIMS1-202ENST00000338045 KRTAP9-3Q9BYQ3 159 aa6.78□□□□□ -1.32
LIMS1-202ENST00000338045 LOC100996750A0A140TA64 210 aa6.75□□□□□ -1.33
LIMS1-202ENST00000338045 KRTAP4-6Q9BYQ5 205 aa6.75□□□□□ -1.33
LIMS1-202ENST00000338045 KRTAP19-8Q3LI54 63 aa6.72□□□□□ -1.33
LIMS1-202ENST00000338045 C10orf95Q9H7T3 257 aa6.64□□□□□ -1.35
LIMS1-202ENST00000338045 PLAC4Q8WY50 150 aa6.63□□□□□ -1.35
LIMS1-202ENST00000338045 MT1BP07438 61 aa6.62□□□□□ -1.35
LIMS1-202ENST00000338045 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
LIMS1-202ENST00000338045 MT1XP80297 61 aa6.41□□□□□ -1.38
LIMS1-202ENST00000338045 KRTAP10-5P60370 271 aa6.4□□□□□ -1.39
LIMS1-202ENST00000338045 USH2AO75445 5202 aa6.38□□□□□ -1.39
LIMS1-202ENST00000338045 TNP1P09430 55 aa6.33□□□□□ -1.4
LIMS1-202ENST00000338045 KRTAP23-1A1A580 65 aa6.3□□□□□ -1.4
LIMS1-202ENST00000338045 INE1O15225 51 aa6.28□□□□□ -1.4
LIMS1-202ENST00000338045 KRTAP9-2Q9BYQ4 174 aa6.2□□□□□ -1.42
LIMS1-202ENST00000338045 PP632Q6XCG6 107 aa6.18□□□□□ -1.42
LIMS1-202ENST00000338045 SSPOA2VEC9 5147 aa6.18□□□□□ -1.42
LIMS1-202ENST00000338045 KRTAP19-6Q3LI70 58 aa6.17□□□□□ -1.42
LIMS1-202ENST00000338045 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.43
LIMS1-202ENST00000338045 FSIP2Q5CZC0 6907 aa6.11□□□□□ -1.43
LIMS1-202ENST00000338045 KRTAP10-12P60413 245 aa6.08□□□□□ -1.44
LIMS1-202ENST00000338045 LCE3AQ5TA76 89 aa6.07□□□□□ -1.44
LIMS1-202ENST00000338045 KRTAP4-8Q9BYQ9 185 aa6.05□□□□□ -1.44
LIMS1-202ENST00000338045 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
LIMS1-202ENST00000338045 KRTAP8-1Q8IUC2 63 aa5.97□□□□□ -1.45
LIMS1-202ENST00000338045 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-202ENST00000338045 FCGBPQ9Y6R7 5405 aaPredicted RBP5.9□□□□□ -1.46
LIMS1-202ENST00000338045 KRTAP9-6A0A140TA67 174 aa5.9□□□□□ -1.47
LIMS1-202ENST00000338045 KRTAP4-8A0A0G2JLE6 195 aa5.89□□□□□ -1.47
LIMS1-202ENST00000338045 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
LIMS1-202ENST00000338045 KMT2DO14686 5537 aa5.87□□□□□ -1.47
LIMS1-202ENST00000338045 KRTAP12-3P60328 96 aa5.83□□□□□ -1.48
LIMS1-202ENST00000338045 LCE3BQ5TA77 95 aa5.79□□□□□ -1.48
LIMS1-202ENST00000338045 KRTAP19-5Q3LI72 72 aa5.78□□□□□ -1.48
LIMS1-202ENST00000338045 KRTAP19-7Q3SYF9 63 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms