RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 A0A0D9SG42 100 aa12.7□□□□□ -0.38
SOX1-201ENST00000330949 KRTAP10-6P60371 365 aaPredicted RBP12.7□□□□□ -0.38
SOX1-201ENST00000330949 KRTAP13-4Q3LI77 160 aa12.68□□□□□ -0.38
SOX1-201ENST00000330949 C10orf95Q9H7T3 257 aa12.67□□□□□ -0.38
SOX1-201ENST00000330949 APOBP04114 4563 aaKnown RBP12.67□□□□□ -0.38
SOX1-201ENST00000330949 RYR3Q15413 4870 aa12.66□□□□□ -0.38
SOX1-201ENST00000330949 KRTAP3-2Q9BYR7 98 aa12.53□□□□□ -0.4
SOX1-201ENST00000330949 PKHD1L1Q86WI1 4243 aa12.52□□□□□ -0.41
SOX1-201ENST00000330949 KRTAP3-3Q9BYR6 98 aa12.52□□□□□ -0.41
SOX1-201ENST00000330949 DMBT1Q9UGM3 2413 aaPredicted RBP12.51□□□□□ -0.41
SOX1-201ENST00000330949 LRP1Q07954 4544 aaKnown RBP12.5□□□□□ -0.41
SOX1-201ENST00000330949 S4R3F8 94 aa12.49□□□□□ -0.41
SOX1-201ENST00000330949 RYR2Q92736 4967 aa12.47□□□□□ -0.41
SOX1-201ENST00000330949 A0A0A0MQY5 61 aa12.46□□□□□ -0.42
SOX1-201ENST00000330949 KRTAP10-4P60372 401 aaPredicted RBP12.43□□□□□ -0.42
SOX1-201ENST00000330949 A0A1B0GVY2 172 aa12.39□□□□□ -0.43
SOX1-201ENST00000330949 KRTAP12-2P59991 146 aa12.37□□□□□ -0.43
SOX1-201ENST00000330949 MYCBP2O75592 4640 aa12.34□□□□□ -0.43
SOX1-201ENST00000330949 HSPG2P98160 4391 aa12.27□□□□□ -0.44
SOX1-201ENST00000330949 XP32Q5T750 250 aa12.26□□□□□ -0.45
SOX1-201ENST00000330949 EPPK1P58107 5090 aaKnown RBP12.26□□□□□ -0.45
SOX1-201ENST00000330949 FAT3Q8TDW7 4589 aa12.25□□□□□ -0.45
SOX1-201ENST00000330949 KRTAP12-1P59990 96 aa12.24□□□□□ -0.45
SOX1-201ENST00000330949 TNXBP22105 4242 aa12.23□□□□□ -0.45
SOX1-201ENST00000330949 KRTAP10-8P60410 259 aa12.06□□□□□ -0.48
SOX1-201ENST00000330949 KRTAP17-1Q9BYP8 105 aa12.01□□□□□ -0.49
SOX1-201ENST00000330949 M0QZ58 72 aa12.01□□□□□ -0.49
SOX1-201ENST00000330949 KIAA1109Q2LD37 5005 aa12□□□□□ -0.49
SOX1-201ENST00000330949 Q5VSD8 79 aa11.99□□□□□ -0.49
SOX1-201ENST00000330949 LPAP08519 4548 aa11.95□□□□□ -0.5
SOX1-201ENST00000330949 RYR1P21817 5038 aa11.93□□□□□ -0.5
SOX1-201ENST00000330949 LUZP6Q538Z0 58 aa11.89□□□□□ -0.51
SOX1-201ENST00000330949 PLAC4Q8WY50 150 aa11.83□□□□□ -0.52
SOX1-201ENST00000330949 LRP2P98164 4655 aa11.78□□□□□ -0.52
SOX1-201ENST00000330949 ABCA13Q86UQ4 5058 aa11.62□□□□□ -0.55
SOX1-201ENST00000330949 MT1HL1P0DM35 61 aa11.6□□□□□ -0.55
SOX1-201ENST00000330949 BIRC6Q9NR09 4857 aa11.56□□□□□ -0.56
SOX1-201ENST00000330949 R4GN34 69 aa11.53□□□□□ -0.56
SOX1-201ENST00000330949 KRTAP4-5Q9BYR2 181 aa11.45□□□□□ -0.58
SOX1-201ENST00000330949 PP632Q6XCG6 107 aa11.4□□□□□ -0.58
SOX1-201ENST00000330949 PCLOQ9Y6V0 5065 aa11.37□□□□□ -0.59
SOX1-201ENST00000330949 HERC2O95714 4834 aa11.36□□□□□ -0.59
SOX1-201ENST00000330949 HERC1Q15751 4861 aa11.13□□□□□ -0.63
SOX1-201ENST00000330949 LORP23490 312 aaPredicted RBP11.1□□□□□ -0.63
SOX1-201ENST00000330949 MUC17Q685J3 4493 aa11.07□□□□□ -0.64
SOX1-201ENST00000330949 MUC2Q02817 5179 aa11.06□□□□□ -0.64
SOX1-201ENST00000330949 CAMK2N1Q7Z7J9 78 aa11.05□□□□□ -0.64
SOX1-201ENST00000330949 KRTAP4-1Q9BYQ7 146 aa10.95□□□□□ -0.66
SOX1-201ENST00000330949 SPRR5A0A1B0GTR4 108 aa10.88□□□□□ -0.67
SOX1-201ENST00000330949 J3QL48 77 aa10.88□□□□□ -0.67
SOX1-201ENST00000330949 SEC61BP60468 96 aaKnown RBP10.85□□□□□ -0.67
SOX1-201ENST00000330949 KRTAP23-1A1A580 65 aa10.8□□□□□ -0.68
SOX1-201ENST00000330949 TNP1P09430 55 aa10.75□□□□□ -0.69
SOX1-201ENST00000330949 KRTAP19-2Q3LHN2 52 aa10.61□□□□□ -0.71
SOX1-201ENST00000330949 UBR4Q5T4S7 5183 aa10.55□□□□□ -0.72
SOX1-201ENST00000330949 PRO2289Q9P1D8 64 aa10.54□□□□□ -0.72
SOX1-201ENST00000330949 RNF213Q63HN8 5207 aa10.49□□□□□ -0.73
SOX1-201ENST00000330949 FAT4Q6V0I7 4981 aa10.49□□□□□ -0.73
SOX1-201ENST00000330949 FLGP20930 4061 aaPredicted RBP10.47□□□□□ -0.73
SOX1-201ENST00000330949 HMCN2Q8NDA2 5059 aa10.46□□□□□ -0.73
SOX1-201ENST00000330949 INE1O15225 51 aa10.3□□□□□ -0.76
SOX1-201ENST00000330949 M0R2T5 61 aa10.03□□□□□ -0.8
SOX1-201ENST00000330949 LCE3AQ5TA76 89 aa10.01□□□□□ -0.81
SOX1-201ENST00000330949 LCE2CQ5TA81 110 aa10.01□□□□□ -0.81
SOX1-201ENST00000330949 SPRR2GQ9BYE4 73 aa9.86□□□□□ -0.83
SOX1-201ENST00000330949 KRTAP8-1Q8IUC2 63 aa9.79□□□□□ -0.84
SOX1-201ENST00000330949 KRTAP19-1Q8IUB9 90 aa9.76□□□□□ -0.85
SOX1-201ENST00000330949 KRTAP10-10P60014 251 aa9.71□□□□□ -0.85
SOX1-201ENST00000330949 MT1HP80294 61 aa9.71□□□□□ -0.85
SOX1-201ENST00000330949 MT1FP04733 61 aa9.63□□□□□ -0.87
SOX1-201ENST00000330949 MT2AP02795 61 aa9.56□□□□□ -0.88
SOX1-201ENST00000330949 KRTAP12-3P60328 96 aa9.52□□□□□ -0.88
SOX1-201ENST00000330949 KRTAP9-8Q9BYQ0 159 aa9.5□□□□□ -0.89
SOX1-201ENST00000330949 KRTAP10-12P60413 245 aa9.47□□□□□ -0.89
SOX1-201ENST00000330949 KRTAP10-5P60370 271 aa9.27□□□□□ -0.92
SOX1-201ENST00000330949 KRTAP19-8Q3LI54 63 aa9.27□□□□□ -0.93
SOX1-201ENST00000330949 MT1BP07438 61 aa9.24□□□□□ -0.93
SOX1-201ENST00000330949 MT1XP80297 61 aa9.23□□□□□ -0.93
SOX1-201ENST00000330949 FSIP2Q5CZC0 6907 aa9.21□□□□□ -0.94
SOX1-201ENST00000330949 USH2AO75445 5202 aa9.19□□□□□ -0.94
SOX1-201ENST00000330949 KRTAP10-7P60409 375 aaPredicted RBP9.09□□□□□ -0.96
SOX1-201ENST00000330949 KRTAP9-3Q9BYQ3 159 aa9.07□□□□□ -0.96
SOX1-201ENST00000330949 KMT2DO14686 5537 aa9.06□□□□□ -0.96
SOX1-201ENST00000330949 LCE3CQ5T5A8 94 aa9.01□□□□□ -0.97
SOX1-201ENST00000330949 LCE2AQ5TA79 106 aaPredicted RBP8.92□□□□□ -0.98
SOX1-201ENST00000330949 LCE2BO14633 110 aa8.82□□□□□ -1
SOX1-201ENST00000330949 KRTAP19-5Q3LI72 72 aa8.81□□□□□ -1
SOX1-201ENST00000330949 KRTAP2-3P0C7H8 128 aa8.75□□□□□ -1.01
SOX1-201ENST00000330949 KRTAP2-4Q9BYR9 128 aa8.75□□□□□ -1.01
SOX1-201ENST00000330949 KRTAP2-1Q9BYU5 128 aa8.75□□□□□ -1.01
SOX1-201ENST00000330949 KRTAP9-6A8MVA2 160 aa8.7□□□□□ -1.02
SOX1-201ENST00000330949 KRTAP4-8A0A0G2JLE6 195 aa8.64□□□□□ -1.03
SOX1-201ENST00000330949 KRTAP4-8Q9BYQ9 185 aa8.64□□□□□ -1.03
SOX1-201ENST00000330949 SSPOA2VEC9 5147 aa8.39□□□□□ -1.07
SOX1-201ENST00000330949 KRTAP4-7Q9BYR0 210 aa8.36□□□□□ -1.07
SOX1-201ENST00000330949 KRTAP19-4Q3LI73 84 aa8.34□□□□□ -1.07
SOX1-201ENST00000330949 KRTAP9-2Q9BYQ4 174 aa8.34□□□□□ -1.07
SOX1-201ENST00000330949 KRTAP19-7Q3SYF9 63 aa8.22□□□□□ -1.09
SOX1-201ENST00000330949 MT1LQ93083 61 aa8.06□□□□□ -1.12
SOX1-201ENST00000330949 FCGBPQ9Y6R7 5405 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms