RNA–Protein interactions for RNA: ENST00000320081.9

CLIP4-201, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP4, Length 4,293 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-201ENST00000320081 DNAH1Q9P2D7 4330 aa8.01□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP10-6P60371 365 aaPredicted RBP8□□□□□ -1.13
CLIP4-201ENST00000320081 DNAH3Q8TD57 4116 aa7.99□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
CLIP4-201ENST00000320081 MYCBP2O75592 4640 aa7.97□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP4-5Q9BYR2 181 aa7.95□□□□□ -1.14
CLIP4-201ENST00000320081 DNAH8Q96JB1 4490 aa7.93□□□□□ -1.14
CLIP4-201ENST00000320081 MT1HL1P0DM35 61 aa7.91□□□□□ -1.14
CLIP4-201ENST00000320081 KRTAP10-4P60372 401 aaPredicted RBP7.88□□□□□ -1.15
CLIP4-201ENST00000320081 VPS13DQ5THJ4 4388 aa7.88□□□□□ -1.15
CLIP4-201ENST00000320081 LRP1BQ9NZR2 4599 aa7.85□□□□□ -1.15
CLIP4-201ENST00000320081 KRTAP3-3Q9BYR6 98 aa7.83□□□□□ -1.16
CLIP4-201ENST00000320081 HYDINQ4G0P3 5121 aa7.8□□□□□ -1.16
CLIP4-201ENST00000320081 DNAH6Q9C0G6 4158 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 DNAH2Q9P225 4427 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 FRAS1Q86XX4 4008 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 RYR1P21817 5038 aa7.78□□□□□ -1.16
CLIP4-201ENST00000320081 PP632Q6XCG6 107 aa7.77□□□□□ -1.17
CLIP4-201ENST00000320081 KRTAP3-2Q9BYR7 98 aa7.77□□□□□ -1.17
CLIP4-201ENST00000320081 FAT3Q8TDW7 4589 aa7.74□□□□□ -1.17
CLIP4-201ENST00000320081 DNAH17Q9UFH2 4485 aa7.72□□□□□ -1.17
CLIP4-201ENST00000320081 KIAA1109Q2LD37 5005 aa7.72□□□□□ -1.17
CLIP4-201ENST00000320081 DYNC1H1Q14204 4646 aaKnown RBP7.7□□□□□ -1.18
CLIP4-201ENST00000320081 DYNC2H1Q8NCM8 4307 aaKnown RBP7.64□□□□□ -1.19
CLIP4-201ENST00000320081 PKHD1P08F94 4074 aa7.63□□□□□ -1.19
CLIP4-201ENST00000320081 KRTAP15-1Q3LI76 137 aa7.61□□□□□ -1.19
CLIP4-201ENST00000320081 VPS13BQ7Z7G8 4022 aa7.61□□□□□ -1.19
CLIP4-201ENST00000320081 HECTD4Q9Y4D8 3996 aa7.59□□□□□ -1.19
CLIP4-201ENST00000320081 KMT2CQ8NEZ4 4911 aaKnown RBP7.58□□□□□ -1.2
CLIP4-201ENST00000320081 ALMS1Q8TCU4 4167 aa7.58□□□□□ -1.2
CLIP4-201ENST00000320081 LORP23490 312 aaPredicted RBP7.56□□□□□ -1.2
CLIP4-201ENST00000320081 LRP1Q07954 4544 aaKnown RBP7.55□□□□□ -1.2
CLIP4-201ENST00000320081 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
CLIP4-201ENST00000320081 RYR3Q15413 4870 aa7.43□□□□□ -1.22
CLIP4-201ENST00000320081 APOBP04114 4563 aaKnown RBP7.41□□□□□ -1.22
CLIP4-201ENST00000320081 PRO2289Q9P1D8 64 aa7.4□□□□□ -1.22
CLIP4-201ENST00000320081 FAT2Q9NYQ8 4349 aa7.36□□□□□ -1.23
CLIP4-201ENST00000320081 KRTAP4-1Q9BYQ7 146 aa7.31□□□□□ -1.24
CLIP4-201ENST00000320081 RYR2Q92736 4967 aa7.3□□□□□ -1.24
CLIP4-201ENST00000320081 LRP2P98164 4655 aa7.29□□□□□ -1.24
CLIP4-201ENST00000320081 PKD1P98161 4303 aa7.28□□□□□ -1.24
CLIP4-201ENST00000320081 KRTAP17-1Q9BYP8 105 aa7.25□□□□□ -1.25
CLIP4-201ENST00000320081 EPPK1P58107 5090 aaKnown RBP7.12□□□□□ -1.27
CLIP4-201ENST00000320081 HSPG2P98160 4391 aa7.02□□□□□ -1.29
CLIP4-201ENST00000320081 HERC2O95714 4834 aa7.02□□□□□ -1.29
CLIP4-201ENST00000320081 LCE3AQ5TA76 89 aa7.01□□□□□ -1.29
CLIP4-201ENST00000320081 KRTAP10-12P60413 245 aa7□□□□□ -1.29
CLIP4-201ENST00000320081 CRCT1Q9UGL9 99 aa6.97□□□□□ -1.29
CLIP4-201ENST00000320081 PCLOQ9Y6V0 5065 aa6.97□□□□□ -1.29
CLIP4-201ENST00000320081 LPAP08519 4548 aa6.91□□□□□ -1.3
CLIP4-201ENST00000320081 KRTAP12-3P60328 96 aa6.89□□□□□ -1.31
CLIP4-201ENST00000320081 PKHD1L1Q86WI1 4243 aa6.85□□□□□ -1.31
CLIP4-201ENST00000320081 ABCA13Q86UQ4 5058 aa6.81□□□□□ -1.32
CLIP4-201ENST00000320081 MT1HP80294 61 aa6.76□□□□□ -1.33
CLIP4-201ENST00000320081 FSIP2Q5CZC0 6907 aa6.72□□□□□ -1.33
CLIP4-201ENST00000320081 MT2AP02795 61 aa6.72□□□□□ -1.33
CLIP4-201ENST00000320081 MUC2Q02817 5179 aa6.71□□□□□ -1.34
CLIP4-201ENST00000320081 MT1FP04733 61 aa6.7□□□□□ -1.34
CLIP4-201ENST00000320081 TNXBP22105 4242 aa6.67□□□□□ -1.34
CLIP4-201ENST00000320081 HERC1Q15751 4861 aa6.64□□□□□ -1.35
CLIP4-201ENST00000320081 RNF213Q63HN8 5207 aa6.56□□□□□ -1.36
CLIP4-201ENST00000320081 SPRR2GQ9BYE4 73 aa6.54□□□□□ -1.36
CLIP4-201ENST00000320081 OBSCNQ5VST9 7968 aa6.52□□□□□ -1.37
CLIP4-201ENST00000320081 BIRC6Q9NR09 4857 aa6.52□□□□□ -1.37
CLIP4-201ENST00000320081 UBR4Q5T4S7 5183 aa6.5□□□□□ -1.37
CLIP4-201ENST00000320081 KRTAP19-1Q8IUB9 90 aa6.47□□□□□ -1.37
CLIP4-201ENST00000320081 KRTAP23-1A1A580 65 aa6.45□□□□□ -1.38
CLIP4-201ENST00000320081 SYNE1Q8NF91 8797 aaKnown RBP6.45□□□□□ -1.38
CLIP4-201ENST00000320081 FAT4Q6V0I7 4981 aa6.45□□□□□ -1.38
CLIP4-201ENST00000320081 INE1O15225 51 aa6.43□□□□□ -1.38
CLIP4-201ENST00000320081 KRTAP8-1Q8IUC2 63 aa6.36□□□□□ -1.39
CLIP4-201ENST00000320081 KRTAP10-7P60409 375 aaPredicted RBP6.33□□□□□ -1.4
CLIP4-201ENST00000320081 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
CLIP4-201ENST00000320081 KRTAP10-5P60370 271 aa6.31□□□□□ -1.4
CLIP4-201ENST00000320081 LCE2CQ5TA81 110 aa6.24□□□□□ -1.41
CLIP4-201ENST00000320081 KRTAP9-8Q9BYQ0 159 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 KRTAP4-8A0A0G2JLE6 195 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 KRTAP4-8Q9BYQ9 185 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 MUC17Q685J3 4493 aa6.18□□□□□ -1.42
CLIP4-201ENST00000320081 MT1XP80297 61 aa6.16□□□□□ -1.42
CLIP4-201ENST00000320081 MT1BP07438 61 aa6.15□□□□□ -1.42
CLIP4-201ENST00000320081 HMCN2Q8NDA2 5059 aa6.12□□□□□ -1.43
CLIP4-201ENST00000320081 SPRR5A0A1B0GTR4 108 aa6.12□□□□□ -1.43
CLIP4-201ENST00000320081 KRTAP19-2Q3LHN2 52 aa6.09□□□□□ -1.43
CLIP4-201ENST00000320081 KRTAP19-8Q3LI54 63 aa6.08□□□□□ -1.44
CLIP4-201ENST00000320081 LCE3CQ5T5A8 94 aa6.06□□□□□ -1.44
CLIP4-201ENST00000320081 SPRR2FQ96RM1 72 aa6.06□□□□□ -1.44
CLIP4-201ENST00000320081 FLGP20930 4061 aaPredicted RBP5.99□□□□□ -1.45
CLIP4-201ENST00000320081 KRTAP9-3Q9BYQ3 159 aa5.95□□□□□ -1.46
CLIP4-201ENST00000320081 KRTAP4-7Q9BYR0 210 aa5.93□□□□□ -1.46
CLIP4-201ENST00000320081 DSTQ03001 7570 aaKnown RBP5.92□□□□□ -1.46
CLIP4-201ENST00000320081 FCGBPQ9Y6R7 5405 aaPredicted RBP5.86□□□□□ -1.47
CLIP4-201ENST00000320081 LCE2BO14633 110 aa5.86□□□□□ -1.47
CLIP4-201ENST00000320081 USH2AO75445 5202 aa5.86□□□□□ -1.47
CLIP4-201ENST00000320081 MT1GP13640 62 aa5.8□□□□□ -1.48
CLIP4-201ENST00000320081 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
CLIP4-201ENST00000320081 KMT2DO14686 5537 aa5.69□□□□□ -1.5
CLIP4-201ENST00000320081 SYNE2Q8WXH0 6885 aaKnown RBP5.58□□□□□ -1.52
CLIP4-201ENST00000320081 KRTAP12-4P60329 112 aa5.55□□□□□ -1.52
CLIP4-201ENST00000320081 KRTAP4-3Q9BYR4 195 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms