RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 LRP1BQ9NZR2 4599 aa4.75□□□□□ -1.65
TMEM39A-201ENST00000319172 DNAH2Q9P225 4427 aa4.75□□□□□ -1.65
TMEM39A-201ENST00000319172 DYNC2H1Q8NCM8 4307 aaKnown RBP4.71□□□□□ -1.65
TMEM39A-201ENST00000319172 DNAH7Q8WXX0 4024 aa4.71□□□□□ -1.66
TMEM39A-201ENST00000319172 NDUFAF8A1L188 74 aa4.7□□□□□ -1.66
TMEM39A-201ENST00000319172 KIAA1109Q2LD37 5005 aa4.69□□□□□ -1.66
TMEM39A-201ENST00000319172 KRTAP3-1Q9BYR8 98 aa4.69□□□□□ -1.66
TMEM39A-201ENST00000319172 KRTAP10-10P60014 251 aa4.67□□□□□ -1.66
TMEM39A-201ENST00000319172 DNAH8Q96JB1 4490 aa4.66□□□□□ -1.66
TMEM39A-201ENST00000319172 P0C880 135 aa4.65□□□□□ -1.66
TMEM39A-201ENST00000319172 RYR1P21817 5038 aa4.65□□□□□ -1.67
TMEM39A-201ENST00000319172 HYDINQ4G0P3 5121 aa4.64□□□□□ -1.67
TMEM39A-201ENST00000319172 H0YAA0 97 aa4.62□□□□□ -1.67
TMEM39A-201ENST00000319172 DNAH6Q9C0G6 4158 aa4.62□□□□□ -1.67
TMEM39A-201ENST00000319172 RYR3Q15413 4870 aa4.61□□□□□ -1.67
TMEM39A-201ENST00000319172 SACSQ9NZJ4 4579 aa4.61□□□□□ -1.67
TMEM39A-201ENST00000319172 FAT2Q9NYQ8 4349 aa4.59□□□□□ -1.67
TMEM39A-201ENST00000319172 VPS13BQ7Z7G8 4022 aa4.58□□□□□ -1.68
TMEM39A-201ENST00000319172 RYR2Q92736 4967 aa4.57□□□□□ -1.68
TMEM39A-201ENST00000319172 TNP1P09430 55 aa4.56□□□□□ -1.68
TMEM39A-201ENST00000319172 APOBP04114 4563 aaKnown RBP4.55□□□□□ -1.68
TMEM39A-201ENST00000319172 HECTD4Q9Y4D8 3996 aa4.55□□□□□ -1.68
TMEM39A-201ENST00000319172 KRTAP17-1Q9BYP8 105 aa4.55□□□□□ -1.68
TMEM39A-201ENST00000319172 KMT2CQ8NEZ4 4911 aaKnown RBP4.54□□□□□ -1.68
TMEM39A-201ENST00000319172 PKHD1P08F94 4074 aa4.54□□□□□ -1.68
TMEM39A-201ENST00000319172 FRAS1Q86XX4 4008 aa4.54□□□□□ -1.68
TMEM39A-201ENST00000319172 MYCBP2O75592 4640 aa4.52□□□□□ -1.69
TMEM39A-201ENST00000319172 LRP1Q07954 4544 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-201ENST00000319172 KRTAP15-1Q3LI76 137 aa4.49□□□□□ -1.69
TMEM39A-201ENST00000319172 KRTAP3-3Q9BYR6 98 aa4.44□□□□□ -1.7
TMEM39A-201ENST00000319172 KRTAP10-6P60371 365 aaPredicted RBP4.44□□□□□ -1.7
TMEM39A-201ENST00000319172 FAT3Q8TDW7 4589 aa4.44□□□□□ -1.7
TMEM39A-201ENST00000319172 PRO2289Q9P1D8 64 aa4.42□□□□□ -1.7
TMEM39A-201ENST00000319172 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
TMEM39A-201ENST00000319172 C10orf95Q9H7T3 257 aa4.42□□□□□ -1.7
TMEM39A-201ENST00000319172 KRTAP12-2P59991 146 aa4.39□□□□□ -1.71
TMEM39A-201ENST00000319172 PKD1P98161 4303 aa4.38□□□□□ -1.71
TMEM39A-201ENST00000319172 HERC2O95714 4834 aa4.36□□□□□ -1.71
TMEM39A-201ENST00000319172 KRTAP3-2Q9BYR7 98 aa4.36□□□□□ -1.71
TMEM39A-201ENST00000319172 KRTAP4-1Q9BYQ7 146 aa4.35□□□□□ -1.71
TMEM39A-201ENST00000319172 HSPG2P98160 4391 aa4.34□□□□□ -1.71
TMEM39A-201ENST00000319172 KRTAP12-1P59990 96 aa4.34□□□□□ -1.71
TMEM39A-201ENST00000319172 INE1O15225 51 aa4.31□□□□□ -1.72
TMEM39A-201ENST00000319172 EPPK1P58107 5090 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-201ENST00000319172 PP632Q6XCG6 107 aa4.29□□□□□ -1.72
TMEM39A-201ENST00000319172 LRP2P98164 4655 aa4.27□□□□□ -1.73
TMEM39A-201ENST00000319172 BIRC6Q9NR09 4857 aa4.26□□□□□ -1.73
TMEM39A-201ENST00000319172 LORP23490 312 aaPredicted RBP4.23□□□□□ -1.73
TMEM39A-201ENST00000319172 ABCA13Q86UQ4 5058 aa4.18□□□□□ -1.74
TMEM39A-201ENST00000319172 LPAP08519 4548 aa4.13□□□□□ -1.75
TMEM39A-201ENST00000319172 MT1HP80294 61 aa4.09□□□□□ -1.75
TMEM39A-201ENST00000319172 PKHD1L1Q86WI1 4243 aa4.08□□□□□ -1.76
TMEM39A-201ENST00000319172 TNXBP22105 4242 aa4.07□□□□□ -1.76
TMEM39A-201ENST00000319172 PCLOQ9Y6V0 5065 aa4.04□□□□□ -1.76
TMEM39A-201ENST00000319172 HERC1Q15751 4861 aa4.03□□□□□ -1.76
TMEM39A-201ENST00000319172 MT2AP02795 61 aa4□□□□□ -1.77
TMEM39A-201ENST00000319172 MT1FP04733 61 aa3.97□□□□□ -1.77
TMEM39A-201ENST00000319172 LCE2CQ5TA81 110 aa3.9□□□□□ -1.78
TMEM39A-201ENST00000319172 KRTAP10-12P60413 245 aa3.9□□□□□ -1.79
TMEM39A-201ENST00000319172 SPRR2GQ9BYE4 73 aa3.89□□□□□ -1.79
TMEM39A-201ENST00000319172 RNF213Q63HN8 5207 aa3.88□□□□□ -1.79
TMEM39A-201ENST00000319172 MUC2Q02817 5179 aa3.87□□□□□ -1.79
TMEM39A-201ENST00000319172 KRTAP19-2Q3LHN2 52 aa3.85□□□□□ -1.79
TMEM39A-201ENST00000319172 CRCT1Q9UGL9 99 aa3.85□□□□□ -1.79
TMEM39A-201ENST00000319172 UBR4Q5T4S7 5183 aa3.84□□□□□ -1.8
TMEM39A-201ENST00000319172 KRTAP19-1Q8IUB9 90 aa3.83□□□□□ -1.8
TMEM39A-201ENST00000319172 LCE3AQ5TA76 89 aa3.83□□□□□ -1.8
TMEM39A-201ENST00000319172 HMCN2Q8NDA2 5059 aa3.81□□□□□ -1.8
TMEM39A-201ENST00000319172 KRTAP9-8Q9BYQ0 159 aa3.8□□□□□ -1.8
TMEM39A-201ENST00000319172 MUC17Q685J3 4493 aa3.78□□□□□ -1.8
TMEM39A-201ENST00000319172 FAT4Q6V0I7 4981 aa3.78□□□□□ -1.8
TMEM39A-201ENST00000319172 KRTAP12-3P60328 96 aa3.77□□□□□ -1.81
TMEM39A-201ENST00000319172 KRTAP8-1Q8IUC2 63 aa3.74□□□□□ -1.81
TMEM39A-201ENST00000319172 FLGP20930 4061 aaPredicted RBP3.74□□□□□ -1.81
TMEM39A-201ENST00000319172 KRTAP19-8Q3LI54 63 aa3.7□□□□□ -1.82
TMEM39A-201ENST00000319172 MT1BP07438 61 aa3.68□□□□□ -1.82
TMEM39A-201ENST00000319172 FSIP2Q5CZC0 6907 aa3.67□□□□□ -1.82
TMEM39A-201ENST00000319172 KRTAP9-3Q9BYQ3 159 aa3.67□□□□□ -1.82
TMEM39A-201ENST00000319172 MT1XP80297 61 aa3.62□□□□□ -1.83
TMEM39A-201ENST00000319172 KRTAP10-7P60409 375 aaPredicted RBP3.61□□□□□ -1.83
TMEM39A-201ENST00000319172 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
TMEM39A-201ENST00000319172 KRTAP10-5P60370 271 aa3.6□□□□□ -1.83
TMEM39A-201ENST00000319172 LCE2DQ5TA82 110 aaPredicted RBP3.59□□□□□ -1.84
TMEM39A-201ENST00000319172 LCE2BO14633 110 aa3.58□□□□□ -1.84
TMEM39A-201ENST00000319172 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
TMEM39A-201ENST00000319172 KRTAP19-5Q3LI72 72 aa3.55□□□□□ -1.84
TMEM39A-201ENST00000319172 LCE2AQ5TA79 106 aaPredicted RBP3.52□□□□□ -1.85
TMEM39A-201ENST00000319172 KRTAP4-8A0A0G2JLE6 195 aa3.5□□□□□ -1.85
TMEM39A-201ENST00000319172 KRTAP4-8Q9BYQ9 185 aa3.5□□□□□ -1.85
TMEM39A-201ENST00000319172 SYNE1Q8NF91 8797 aaKnown RBP3.45□□□□□ -1.86
TMEM39A-201ENST00000319172 KRTAP19-4Q3LI73 84 aa3.45□□□□□ -1.86
TMEM39A-201ENST00000319172 LCE3CQ5T5A8 94 aa3.37□□□□□ -1.87
TMEM39A-201ENST00000319172 USH2AO75445 5202 aa3.35□□□□□ -1.87
TMEM39A-201ENST00000319172 SPRR2EP22531 72 aa3.32□□□□□ -1.88
TMEM39A-201ENST00000319172 SPRR2BP35325 72 aa3.32□□□□□ -1.88
TMEM39A-201ENST00000319172 SPRR2AP35326 72 aa3.32□□□□□ -1.88
TMEM39A-201ENST00000319172 KRTAP19-6Q3LI70 58 aa3.28□□□□□ -1.88
TMEM39A-201ENST00000319172 KRTAP9-2Q9BYQ4 174 aa3.28□□□□□ -1.88
TMEM39A-201ENST00000319172 KRTAP4-7Q9BYR0 210 aa3.25□□□□□ -1.89
TMEM39A-201ENST00000319172 OBSCNQ5VST9 7968 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms