RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 PKHD1P08F94 4074 aa5.13□□□□□ -1.59
PTPRA-202ENST00000318266 P0C880 135 aa5.12□□□□□ -1.59
PTPRA-202ENST00000318266 PKD1P98161 4303 aa5.11□□□□□ -1.59
PTPRA-202ENST00000318266 KIAA1109Q2LD37 5005 aa5.11□□□□□ -1.59
PTPRA-202ENST00000318266 C20orf166-AS1Q96NR2 134 aa5.1□□□□□ -1.59
PTPRA-202ENST00000318266 SPINT4Q6UDR6 99 aa5.08□□□□□ -1.6
PTPRA-202ENST00000318266 KRTAP4-5Q9BYR2 181 aa5.08□□□□□ -1.6
PTPRA-202ENST00000318266 C10orf95Q9H7T3 257 aa5.07□□□□□ -1.6
PTPRA-202ENST00000318266 KRTAP13-4Q3LI77 160 aa5.06□□□□□ -1.6
PTPRA-202ENST00000318266 ABCA13Q86UQ4 5058 aa5.06□□□□□ -1.6
PTPRA-202ENST00000318266 RPL37P61927 97 aaKnown RBP5.04□□□□□ -1.6
PTPRA-202ENST00000318266 TPRXLQ17RH7 258 aa5.04□□□□□ -1.6
PTPRA-202ENST00000318266 FAT1Q14517 4588 aa5.03□□□□□ -1.6
PTPRA-202ENST00000318266 HSPG2P98160 4391 aa5.03□□□□□ -1.6
PTPRA-202ENST00000318266 RPS29P62273 56 aaKnown RBP5.02□□□□□ -1.61
PTPRA-202ENST00000318266 KRTAP10-6P60371 365 aaPredicted RBP5.01□□□□□ -1.61
PTPRA-202ENST00000318266 J3QL48 77 aa4.99□□□□□ -1.61
PTPRA-202ENST00000318266 Q5VSD8 79 aa4.99□□□□□ -1.61
PTPRA-202ENST00000318266 NDUFAF8A1L188 74 aa4.97□□□□□ -1.61
PTPRA-202ENST00000318266 KRTAP3-3Q9BYR6 98 aa4.97□□□□□ -1.61
PTPRA-202ENST00000318266 APOBP04114 4563 aaKnown RBP4.95□□□□□ -1.62
PTPRA-202ENST00000318266 KRTAP3-2Q9BYR7 98 aa4.94□□□□□ -1.62
PTPRA-202ENST00000318266 KRTAP10-8P60410 259 aa4.93□□□□□ -1.62
PTPRA-202ENST00000318266 KRTAP12-2P59991 146 aa4.91□□□□□ -1.62
PTPRA-202ENST00000318266 S4R3F8 94 aa4.91□□□□□ -1.62
PTPRA-202ENST00000318266 MYCBP2O75592 4640 aa4.91□□□□□ -1.62
PTPRA-202ENST00000318266 PKHD1L1Q86WI1 4243 aa4.87□□□□□ -1.63
PTPRA-202ENST00000318266 KRTAP15-1Q3LI76 137 aa4.86□□□□□ -1.63
PTPRA-202ENST00000318266 LRP1Q07954 4544 aaKnown RBP4.86□□□□□ -1.63
PTPRA-202ENST00000318266 KRTAP10-4P60372 401 aaPredicted RBP4.85□□□□□ -1.63
PTPRA-202ENST00000318266 KRTAP12-1P59990 96 aa4.82□□□□□ -1.64
PTPRA-202ENST00000318266 XP32Q5T750 250 aa4.79□□□□□ -1.64
PTPRA-202ENST00000318266 FAT3Q8TDW7 4589 aa4.78□□□□□ -1.64
PTPRA-202ENST00000318266 HERC1Q15751 4861 aa4.75□□□□□ -1.65
PTPRA-202ENST00000318266 LPAP08519 4548 aa4.74□□□□□ -1.65
PTPRA-202ENST00000318266 HMCN2Q8NDA2 5059 aa4.74□□□□□ -1.65
PTPRA-202ENST00000318266 TNXBP22105 4242 aa4.69□□□□□ -1.66
PTPRA-202ENST00000318266 M0QZ58 72 aa4.67□□□□□ -1.66
PTPRA-202ENST00000318266 MT1HL1P0DM35 61 aa4.67□□□□□ -1.66
PTPRA-202ENST00000318266 A0A0A0MQY5 61 aa4.67□□□□□ -1.66
PTPRA-202ENST00000318266 LRP2P98164 4655 aa4.65□□□□□ -1.67
PTPRA-202ENST00000318266 R4GN34 69 aa4.62□□□□□ -1.67
PTPRA-202ENST00000318266 KRTAP9-6A0A140TA67 174 aa4.61□□□□□ -1.67
PTPRA-202ENST00000318266 PLAC4Q8WY50 150 aa4.59□□□□□ -1.68
PTPRA-202ENST00000318266 KRTAP9-2Q9BYQ4 174 aa4.58□□□□□ -1.68
PTPRA-202ENST00000318266 LORP23490 312 aaPredicted RBP4.55□□□□□ -1.68
PTPRA-202ENST00000318266 UBR4Q5T4S7 5183 aa4.55□□□□□ -1.68
PTPRA-202ENST00000318266 RNF213Q63HN8 5207 aa4.5□□□□□ -1.69
PTPRA-202ENST00000318266 LUZP6Q538Z0 58 aa4.5□□□□□ -1.69
PTPRA-202ENST00000318266 LCE2DQ5TA82 110 aaPredicted RBP4.5□□□□□ -1.69
PTPRA-202ENST00000318266 LCE2AQ5TA79 106 aaPredicted RBP4.47□□□□□ -1.69
PTPRA-202ENST00000318266 CAMK2N1Q7Z7J9 78 aa4.45□□□□□ -1.7
PTPRA-202ENST00000318266 FAT4Q6V0I7 4981 aa4.37□□□□□ -1.71
PTPRA-202ENST00000318266 MUC17Q685J3 4493 aa4.36□□□□□ -1.71
PTPRA-202ENST00000318266 KRTAP4-1Q9BYQ7 146 aa4.33□□□□□ -1.72
PTPRA-202ENST00000318266 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
PTPRA-202ENST00000318266 CRCT1Q9UGL9 99 aa4.33□□□□□ -1.72
PTPRA-202ENST00000318266 MUC2Q02817 5179 aa4.3□□□□□ -1.72
PTPRA-202ENST00000318266 SEC61BP60468 96 aaKnown RBP4.29□□□□□ -1.72
PTPRA-202ENST00000318266 TNP1P09430 55 aa4.23□□□□□ -1.73
PTPRA-202ENST00000318266 KRTAP19-2Q3LHN2 52 aa4.17□□□□□ -1.74
PTPRA-202ENST00000318266 SPRR5A0A1B0GTR4 108 aa4.1□□□□□ -1.75
PTPRA-202ENST00000318266 KRTAP9-7A8MTY7 169 aa4.08□□□□□ -1.76
PTPRA-202ENST00000318266 FLGP20930 4061 aaPredicted RBP4.06□□□□□ -1.76
PTPRA-202ENST00000318266 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.03□□□□□ -1.76
PTPRA-202ENST00000318266 KRTAP23-1A1A580 65 aa4.02□□□□□ -1.77
PTPRA-202ENST00000318266 LCE3AQ5TA76 89 aa4.02□□□□□ -1.77
PTPRA-202ENST00000318266 LCE2CQ5TA81 110 aa3.99□□□□□ -1.77
PTPRA-202ENST00000318266 MT1HP80294 61 aa3.99□□□□□ -1.77
PTPRA-202ENST00000318266 M0R2T5 61 aa3.96□□□□□ -1.78
PTPRA-202ENST00000318266 KRTAP19-1Q8IUB9 90 aa3.94□□□□□ -1.78
PTPRA-202ENST00000318266 SPRR2GQ9BYE4 73 aa3.9□□□□□ -1.78
PTPRA-202ENST00000318266 PRO2289Q9P1D8 64 aa3.9□□□□□ -1.78
PTPRA-202ENST00000318266 KRTAP10-10P60014 251 aa3.86□□□□□ -1.79
PTPRA-202ENST00000318266 SSPOA2VEC9 5147 aa3.83□□□□□ -1.8
PTPRA-202ENST00000318266 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
PTPRA-202ENST00000318266 MT1FP04733 61 aa3.81□□□□□ -1.8
PTPRA-202ENST00000318266 KRTAP8-1Q8IUC2 63 aa3.81□□□□□ -1.8
PTPRA-202ENST00000318266 INE1O15225 51 aa3.79□□□□□ -1.8
PTPRA-202ENST00000318266 KRTAP12-3P60328 96 aa3.79□□□□□ -1.8
PTPRA-202ENST00000318266 MT2AP02795 61 aa3.77□□□□□ -1.81
PTPRA-202ENST00000318266 KRTAP10-12P60413 245 aa3.75□□□□□ -1.81
PTPRA-202ENST00000318266 KRTAP10-5P60370 271 aa3.74□□□□□ -1.81
PTPRA-202ENST00000318266 KRTAP19-6Q3LI70 58 aa3.74□□□□□ -1.81
PTPRA-202ENST00000318266 MT1XP80297 61 aa3.73□□□□□ -1.81
PTPRA-202ENST00000318266 LCE2BO14633 110 aa3.72□□□□□ -1.81
PTPRA-202ENST00000318266 KRTAP9-8Q9BYQ0 159 aa3.72□□□□□ -1.81
PTPRA-202ENST00000318266 KRTAP10-7P60409 375 aaPredicted RBP3.71□□□□□ -1.82
PTPRA-202ENST00000318266 MT1BP07438 61 aa3.69□□□□□ -1.82
PTPRA-202ENST00000318266 USH2AO75445 5202 aa3.66□□□□□ -1.82
PTPRA-202ENST00000318266 KRTAP19-8Q3LI54 63 aa3.66□□□□□ -1.82
PTPRA-202ENST00000318266 KRTAP9-3Q9BYQ3 159 aa3.64□□□□□ -1.83
PTPRA-202ENST00000318266 KMT2DO14686 5537 aa3.63□□□□□ -1.83
PTPRA-202ENST00000318266 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
PTPRA-202ENST00000318266 FCGBPQ9Y6R7 5405 aaPredicted RBP3.6□□□□□ -1.83
PTPRA-202ENST00000318266 KRTAP19-5Q3LI72 72 aa3.58□□□□□ -1.84
PTPRA-202ENST00000318266 FSIP2Q5CZC0 6907 aa3.58□□□□□ -1.84
PTPRA-202ENST00000318266 LCE3CQ5T5A8 94 aa3.55□□□□□ -1.84
PTPRA-202ENST00000318266 NEBP20929 6669 aa3.54□□□□□ -1.84
PTPRA-202ENST00000318266 KRTAP9-6A8MVA2 160 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms