RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 VPS13BQ7Z7G8 4022 aa7.78□□□□□ -1.16
PTPN9-201ENST00000306726 BIRC6Q9NR09 4857 aa7.78□□□□□ -1.16
PTPN9-201ENST00000306726 KRTAP3-1Q9BYR8 98 aa7.76□□□□□ -1.17
PTPN9-201ENST00000306726 PKHD1L1Q86WI1 4243 aa7.76□□□□□ -1.17
PTPN9-201ENST00000306726 HSPG2P98160 4391 aa7.75□□□□□ -1.17
PTPN9-201ENST00000306726 KRTAP25-1Q3LHN0 102 aa7.75□□□□□ -1.17
PTPN9-201ENST00000306726 A8MUU9 505 aa7.73□□□□□ -1.17
PTPN9-201ENST00000306726 EPPK1P58107 5090 aaKnown RBP7.73□□□□□ -1.17
PTPN9-201ENST00000306726 KRTAP10-8P60410 259 aa7.72□□□□□ -1.17
PTPN9-201ENST00000306726 KIAA1109Q2LD37 5005 aa7.66□□□□□ -1.18
PTPN9-201ENST00000306726 KRTAP17-1Q9BYP8 105 aa7.65□□□□□ -1.18
PTPN9-201ENST00000306726 J3QL48 77 aa7.64□□□□□ -1.19
PTPN9-201ENST00000306726 RPL37P61927 97 aaKnown RBP7.64□□□□□ -1.19
PTPN9-201ENST00000306726 ROMO1P60602 79 aa7.63□□□□□ -1.19
PTPN9-201ENST00000306726 HERC2O95714 4834 aa7.61□□□□□ -1.19
PTPN9-201ENST00000306726 KRTAP4-5Q9BYR2 181 aa7.61□□□□□ -1.19
PTPN9-201ENST00000306726 P0C880 135 aa7.6□□□□□ -1.19
PTPN9-201ENST00000306726 S4R3F8 94 aa7.6□□□□□ -1.19
PTPN9-201ENST00000306726 MT1HL1P0DM35 61 aa7.6□□□□□ -1.19
PTPN9-201ENST00000306726 C20orf166-AS1Q96NR2 134 aa7.58□□□□□ -1.2
PTPN9-201ENST00000306726 FAT3Q8TDW7 4589 aa7.58□□□□□ -1.2
PTPN9-201ENST00000306726 LRP1Q07954 4544 aaKnown RBP7.57□□□□□ -1.2
PTPN9-201ENST00000306726 KRTAP13-4Q3LI77 160 aa7.55□□□□□ -1.2
PTPN9-201ENST00000306726 NDUFAF8A1L188 74 aa7.51□□□□□ -1.21
PTPN9-201ENST00000306726 TPRXLQ17RH7 258 aa7.43□□□□□ -1.22
PTPN9-201ENST00000306726 XP32Q5T750 250 aa7.39□□□□□ -1.23
PTPN9-201ENST00000306726 M0QZ58 72 aa7.38□□□□□ -1.23
PTPN9-201ENST00000306726 KRTAP12-2P59991 146 aa7.38□□□□□ -1.23
PTPN9-201ENST00000306726 KRTAP10-6P60371 365 aaPredicted RBP7.37□□□□□ -1.23
PTPN9-201ENST00000306726 TNXBP22105 4242 aa7.36□□□□□ -1.23
PTPN9-201ENST00000306726 R4GN34 69 aa7.33□□□□□ -1.24
PTPN9-201ENST00000306726 ABCA13Q86UQ4 5058 aa7.32□□□□□ -1.24
PTPN9-201ENST00000306726 KRTAP3-3Q9BYR6 98 aa7.3□□□□□ -1.24
PTPN9-201ENST00000306726 KRTAP3-2Q9BYR7 98 aa7.24□□□□□ -1.25
PTPN9-201ENST00000306726 LRP2P98164 4655 aa7.21□□□□□ -1.25
PTPN9-201ENST00000306726 PCLOQ9Y6V0 5065 aa7.2□□□□□ -1.26
PTPN9-201ENST00000306726 CAMK2N1Q7Z7J9 78 aa7.2□□□□□ -1.26
PTPN9-201ENST00000306726 SEC61BP60468 96 aaKnown RBP7.18□□□□□ -1.26
PTPN9-201ENST00000306726 KRTAP12-1P59990 96 aa7.16□□□□□ -1.26
PTPN9-201ENST00000306726 LPAP08519 4548 aa7.14□□□□□ -1.27
PTPN9-201ENST00000306726 LORP23490 312 aaPredicted RBP6.99□□□□□ -1.29
PTPN9-201ENST00000306726 LUZP6Q538Z0 58 aa6.96□□□□□ -1.29
PTPN9-201ENST00000306726 MUC2Q02817 5179 aa6.92□□□□□ -1.3
PTPN9-201ENST00000306726 PLAC4Q8WY50 150 aa6.9□□□□□ -1.3
PTPN9-201ENST00000306726 HMCN2Q8NDA2 5059 aa6.9□□□□□ -1.31
PTPN9-201ENST00000306726 KRTAP15-1Q3LI76 137 aa6.9□□□□□ -1.31
PTPN9-201ENST00000306726 HERC1Q15751 4861 aa6.89□□□□□ -1.31
PTPN9-201ENST00000306726 MUC17Q685J3 4493 aa6.88□□□□□ -1.31
PTPN9-201ENST00000306726 M0R2T5 61 aa6.82□□□□□ -1.32
PTPN9-201ENST00000306726 A0A0A0MQY5 61 aa6.73□□□□□ -1.33
PTPN9-201ENST00000306726 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
PTPN9-201ENST00000306726 FAT4Q6V0I7 4981 aa6.57□□□□□ -1.36
PTPN9-201ENST00000306726 TNP1P09430 55 aa6.56□□□□□ -1.36
PTPN9-201ENST00000306726 KRTAP19-2Q3LHN2 52 aa6.54□□□□□ -1.36
PTPN9-201ENST00000306726 RNF213Q63HN8 5207 aa6.49□□□□□ -1.37
PTPN9-201ENST00000306726 LCE2CQ5TA81 110 aa6.48□□□□□ -1.37
PTPN9-201ENST00000306726 UBR4Q5T4S7 5183 aa6.45□□□□□ -1.38
PTPN9-201ENST00000306726 MT1HP80294 61 aa6.41□□□□□ -1.38
PTPN9-201ENST00000306726 KRTAP10-10P60014 251 aa6.35□□□□□ -1.39
PTPN9-201ENST00000306726 PP632Q6XCG6 107 aa6.35□□□□□ -1.39
PTPN9-201ENST00000306726 FLGP20930 4061 aaPredicted RBP6.32□□□□□ -1.4
PTPN9-201ENST00000306726 LCE2AQ5TA79 106 aaPredicted RBP6.31□□□□□ -1.4
PTPN9-201ENST00000306726 LCE3AQ5TA76 89 aa6.15□□□□□ -1.42
PTPN9-201ENST00000306726 KRTAP9-8Q9BYQ0 159 aa6.12□□□□□ -1.43
PTPN9-201ENST00000306726 MT2AP02795 61 aa6.12□□□□□ -1.43
PTPN9-201ENST00000306726 MT1FP04733 61 aa6.03□□□□□ -1.44
PTPN9-201ENST00000306726 SPRR2GQ9BYE4 73 aa5.98□□□□□ -1.45
PTPN9-201ENST00000306726 FSIP2Q5CZC0 6907 aa5.98□□□□□ -1.45
PTPN9-201ENST00000306726 USH2AO75445 5202 aa5.95□□□□□ -1.46
PTPN9-201ENST00000306726 LCE2DQ5TA82 110 aaPredicted RBP5.94□□□□□ -1.46
PTPN9-201ENST00000306726 KRTAP9-3Q9BYQ3 159 aa5.93□□□□□ -1.46
PTPN9-201ENST00000306726 KRTAP19-1Q8IUB9 90 aa5.91□□□□□ -1.46
PTPN9-201ENST00000306726 KMT2DO14686 5537 aa5.9□□□□□ -1.47
PTPN9-201ENST00000306726 KRTAP19-8Q3LI54 63 aa5.86□□□□□ -1.47
PTPN9-201ENST00000306726 KRTAP12-3P60328 96 aa5.81□□□□□ -1.48
PTPN9-201ENST00000306726 KRTAP10-12P60413 245 aa5.8□□□□□ -1.48
PTPN9-201ENST00000306726 OBSCNQ5VST9 7968 aa5.73□□□□□ -1.49
PTPN9-201ENST00000306726 LCE2BO14633 110 aa5.73□□□□□ -1.49
PTPN9-201ENST00000306726 KRTAP10-7P60409 375 aaPredicted RBP5.71□□□□□ -1.5
PTPN9-201ENST00000306726 MT1BP07438 61 aa5.69□□□□□ -1.5
PTPN9-201ENST00000306726 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
PTPN9-201ENST00000306726 KRTAP9-2Q9BYQ4 174 aa5.67□□□□□ -1.5
PTPN9-201ENST00000306726 SPRR5A0A1B0GTR4 108 aa5.61□□□□□ -1.51
PTPN9-201ENST00000306726 MT1XP80297 61 aa5.59□□□□□ -1.51
PTPN9-201ENST00000306726 KRTAP10-5P60370 271 aa5.58□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP23-1A1A580 65 aa5.58□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP19-6Q3LI70 58 aa5.58□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP4-8A0A0G2JLE6 195 aa5.55□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP4-8Q9BYQ9 185 aa5.55□□□□□ -1.52
PTPN9-201ENST00000306726 CRCT1Q9UGL9 99 aa5.55□□□□□ -1.52
PTPN9-201ENST00000306726 DSTQ03001 7570 aaKnown RBP5.55□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP8-1Q8IUC2 63 aa5.54□□□□□ -1.52
PTPN9-201ENST00000306726 KRTAP19-5Q3LI72 72 aa5.52□□□□□ -1.53
PTPN9-201ENST00000306726 SYNE1Q8NF91 8797 aaKnown RBP5.5□□□□□ -1.53
PTPN9-201ENST00000306726 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
PTPN9-201ENST00000306726 FCGBPQ9Y6R7 5405 aaPredicted RBP5.44□□□□□ -1.54
PTPN9-201ENST00000306726 KRTAP9-6A0A140TA67 174 aa5.36□□□□□ -1.55
PTPN9-201ENST00000306726 INE1O15225 51 aa5.36□□□□□ -1.55
PTPN9-201ENST00000306726 SSPOA2VEC9 5147 aa5.32□□□□□ -1.56
PTPN9-201ENST00000306726 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms