RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 DMBT1Q9UGM3 2413 aaPredicted RBP5.73□□□□□ -1.49
ZNF558-201ENST00000301475 APOBP04114 4563 aaKnown RBP5.71□□□□□ -1.5
ZNF558-201ENST00000301475 KRTAP13-4Q3LI77 160 aa5.7□□□□□ -1.5
ZNF558-201ENST00000301475 TPRXLQ17RH7 258 aa5.69□□□□□ -1.5
ZNF558-201ENST00000301475 KRTAP10-6P60371 365 aaPredicted RBP5.68□□□□□ -1.5
ZNF558-201ENST00000301475 RPL37P61927 97 aaKnown RBP5.67□□□□□ -1.5
ZNF558-201ENST00000301475 A0A1B0GVY2 172 aa5.66□□□□□ -1.5
ZNF558-201ENST00000301475 A0A0D9SG42 100 aa5.66□□□□□ -1.5
ZNF558-201ENST00000301475 C10orf95Q9H7T3 257 aa5.64□□□□□ -1.51
ZNF558-201ENST00000301475 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
ZNF558-201ENST00000301475 KIAA1109Q2LD37 5005 aa5.63□□□□□ -1.51
ZNF558-201ENST00000301475 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
ZNF558-201ENST00000301475 KRTAP3-2Q9BYR7 98 aa5.61□□□□□ -1.51
ZNF558-201ENST00000301475 LRP1Q07954 4544 aaKnown RBP5.61□□□□□ -1.51
ZNF558-201ENST00000301475 HSPG2P98160 4391 aa5.61□□□□□ -1.51
ZNF558-201ENST00000301475 EPPK1P58107 5090 aaKnown RBP5.6□□□□□ -1.51
ZNF558-201ENST00000301475 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
ZNF558-201ENST00000301475 MYCBP2O75592 4640 aa5.58□□□□□ -1.52
ZNF558-201ENST00000301475 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
ZNF558-201ENST00000301475 NDUFAF8A1L188 74 aa5.54□□□□□ -1.52
ZNF558-201ENST00000301475 KRTAP12-2P59991 146 aa5.52□□□□□ -1.53
ZNF558-201ENST00000301475 KRTAP10-4P60372 401 aaPredicted RBP5.52□□□□□ -1.53
ZNF558-201ENST00000301475 S4R3F8 94 aa5.52□□□□□ -1.53
ZNF558-201ENST00000301475 KRTAP10-8P60410 259 aa5.51□□□□□ -1.53
ZNF558-201ENST00000301475 RYR1P21817 5038 aa5.51□□□□□ -1.53
ZNF558-201ENST00000301475 Q5VSD8 79 aa5.5□□□□□ -1.53
ZNF558-201ENST00000301475 TNXBP22105 4242 aa5.48□□□□□ -1.53
ZNF558-201ENST00000301475 KRTAP17-1Q9BYP8 105 aa5.46□□□□□ -1.54
ZNF558-201ENST00000301475 KRTAP12-1P59990 96 aa5.44□□□□□ -1.54
ZNF558-201ENST00000301475 XP32Q5T750 250 aa5.4□□□□□ -1.55
ZNF558-201ENST00000301475 LPAP08519 4548 aa5.38□□□□□ -1.55
ZNF558-201ENST00000301475 KRTAP4-5Q9BYR2 181 aa5.32□□□□□ -1.56
ZNF558-201ENST00000301475 ABCA13Q86UQ4 5058 aa5.31□□□□□ -1.56
ZNF558-201ENST00000301475 HERC2O95714 4834 aa5.27□□□□□ -1.57
ZNF558-201ENST00000301475 LRP2P98164 4655 aa5.27□□□□□ -1.57
ZNF558-201ENST00000301475 M0QZ58 72 aa5.26□□□□□ -1.57
ZNF558-201ENST00000301475 MT1HL1P0DM35 61 aa5.23□□□□□ -1.57
ZNF558-201ENST00000301475 LCE2DQ5TA82 110 aaPredicted RBP5.19□□□□□ -1.58
ZNF558-201ENST00000301475 BIRC6Q9NR09 4857 aa5.15□□□□□ -1.58
ZNF558-201ENST00000301475 PLAC4Q8WY50 150 aa5.15□□□□□ -1.59
ZNF558-201ENST00000301475 HERC1Q15751 4861 aa5.13□□□□□ -1.59
ZNF558-201ENST00000301475 PCLOQ9Y6V0 5065 aa5.13□□□□□ -1.59
ZNF558-201ENST00000301475 R4GN34 69 aa5.1□□□□□ -1.59
ZNF558-201ENST00000301475 MUC2Q02817 5179 aa5.08□□□□□ -1.6
ZNF558-201ENST00000301475 LORP23490 312 aaPredicted RBP5.07□□□□□ -1.6
ZNF558-201ENST00000301475 LUZP6Q538Z0 58 aa5.05□□□□□ -1.6
ZNF558-201ENST00000301475 MUC17Q685J3 4493 aa5.01□□□□□ -1.61
ZNF558-201ENST00000301475 PP632Q6XCG6 107 aa4.92□□□□□ -1.62
ZNF558-201ENST00000301475 SEC61BP60468 96 aaKnown RBP4.89□□□□□ -1.63
ZNF558-201ENST00000301475 RNF213Q63HN8 5207 aa4.88□□□□□ -1.63
ZNF558-201ENST00000301475 CAMK2N1Q7Z7J9 78 aa4.88□□□□□ -1.63
ZNF558-201ENST00000301475 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
ZNF558-201ENST00000301475 UBR4Q5T4S7 5183 aa4.85□□□□□ -1.63
ZNF558-201ENST00000301475 KRTAP4-1Q9BYQ7 146 aa4.84□□□□□ -1.63
ZNF558-201ENST00000301475 FAT4Q6V0I7 4981 aa4.84□□□□□ -1.63
ZNF558-201ENST00000301475 KRTAP19-2Q3LHN2 52 aa4.79□□□□□ -1.64
ZNF558-201ENST00000301475 SPRR5A0A1B0GTR4 108 aa4.77□□□□□ -1.65
ZNF558-201ENST00000301475 FLGP20930 4061 aaPredicted RBP4.73□□□□□ -1.65
ZNF558-201ENST00000301475 TNP1P09430 55 aa4.72□□□□□ -1.65
ZNF558-201ENST00000301475 KRTAP23-1A1A580 65 aa4.67□□□□□ -1.66
ZNF558-201ENST00000301475 M0R2T5 61 aa4.53□□□□□ -1.68
ZNF558-201ENST00000301475 LCE3AQ5TA76 89 aa4.5□□□□□ -1.69
ZNF558-201ENST00000301475 LCE2CQ5TA81 110 aa4.49□□□□□ -1.69
ZNF558-201ENST00000301475 PRO2289Q9P1D8 64 aa4.47□□□□□ -1.69
ZNF558-201ENST00000301475 KRTAP19-1Q8IUB9 90 aa4.45□□□□□ -1.7
ZNF558-201ENST00000301475 SPRR2GQ9BYE4 73 aa4.45□□□□□ -1.7
ZNF558-201ENST00000301475 LCE2AQ5TA79 106 aaPredicted RBP4.42□□□□□ -1.7
ZNF558-201ENST00000301475 MT1HP80294 61 aa4.41□□□□□ -1.7
ZNF558-201ENST00000301475 LCE2BO14633 110 aa4.36□□□□□ -1.71
ZNF558-201ENST00000301475 INE1O15225 51 aa4.36□□□□□ -1.71
ZNF558-201ENST00000301475 KRTAP8-1Q8IUC2 63 aa4.35□□□□□ -1.71
ZNF558-201ENST00000301475 KRTAP10-10P60014 251 aa4.32□□□□□ -1.72
ZNF558-201ENST00000301475 MT1FP04733 61 aa4.28□□□□□ -1.72
ZNF558-201ENST00000301475 MT2AP02795 61 aa4.27□□□□□ -1.73
ZNF558-201ENST00000301475 USH2AO75445 5202 aa4.27□□□□□ -1.73
ZNF558-201ENST00000301475 KRTAP9-8Q9BYQ0 159 aa4.25□□□□□ -1.73
ZNF558-201ENST00000301475 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
ZNF558-201ENST00000301475 FSIP2Q5CZC0 6907 aa4.24□□□□□ -1.73
ZNF558-201ENST00000301475 KRTAP10-12P60413 245 aa4.24□□□□□ -1.73
ZNF558-201ENST00000301475 KRTAP10-5P60370 271 aa4.22□□□□□ -1.73
ZNF558-201ENST00000301475 MT1XP80297 61 aa4.21□□□□□ -1.73
ZNF558-201ENST00000301475 KRTAP19-8Q3LI54 63 aa4.19□□□□□ -1.74
ZNF558-201ENST00000301475 MT1BP07438 61 aa4.18□□□□□ -1.74
ZNF558-201ENST00000301475 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
ZNF558-201ENST00000301475 KRTAP9-3Q9BYQ3 159 aa4.07□□□□□ -1.76
ZNF558-201ENST00000301475 KMT2DO14686 5537 aa4.01□□□□□ -1.77
ZNF558-201ENST00000301475 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
ZNF558-201ENST00000301475 KRTAP19-5Q3LI72 72 aa4□□□□□ -1.77
ZNF558-201ENST00000301475 KRTAP9-6A8MVA2 160 aa3.97□□□□□ -1.77
ZNF558-201ENST00000301475 SSPOA2VEC9 5147 aa3.89□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP2-3P0C7H8 128 aa3.87□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP2-4Q9BYR9 128 aa3.87□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP2-1Q9BYU5 128 aa3.87□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP4-8A0A0G2JLE6 195 aa3.84□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP4-8Q9BYQ9 185 aa3.84□□□□□ -1.79
ZNF558-201ENST00000301475 KRTAP4-7Q9BYR0 210 aa3.82□□□□□ -1.8
ZNF558-201ENST00000301475 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
ZNF558-201ENST00000301475 LOC100996750A0A140TA64 210 aa3.75□□□□□ -1.81
ZNF558-201ENST00000301475 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
ZNF558-201ENST00000301475 FCGBPQ9Y6R7 5405 aaPredicted RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms