RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 KRTAP10-1P60331 282 aa7.63□□□□□ -1.19
CDT1-201ENST00000301019 RYR2Q92736 4967 aa7.62□□□□□ -1.19
CDT1-201ENST00000301019 KRTAP15-1Q3LI76 137 aa7.62□□□□□ -1.19
CDT1-201ENST00000301019 KRTAP1-4P0C5Y4 121 aa7.61□□□□□ -1.19
CDT1-201ENST00000301019 SMR3BP02814 79 aaPredicted RBP7.56□□□□□ -1.2
CDT1-201ENST00000301019 MYCBP2O75592 4640 aa7.55□□□□□ -1.2
CDT1-201ENST00000301019 A0A1B0GVY2 172 aa7.55□□□□□ -1.2
CDT1-201ENST00000301019 PKHD1P08F94 4074 aa7.53□□□□□ -1.2
CDT1-201ENST00000301019 KRTAP12-2P59991 146 aa7.5□□□□□ -1.21
CDT1-201ENST00000301019 SEC61BP60468 96 aaKnown RBP7.5□□□□□ -1.21
CDT1-201ENST00000301019 KRTAP10-6P60371 365 aaPredicted RBP7.49□□□□□ -1.21
CDT1-201ENST00000301019 FAT1Q14517 4588 aa7.48□□□□□ -1.21
CDT1-201ENST00000301019 RYR3Q15413 4870 aa7.47□□□□□ -1.21
CDT1-201ENST00000301019 S4R3F8 94 aa7.47□□□□□ -1.21
CDT1-201ENST00000301019 DYNC1H1Q14204 4646 aaKnown RBP7.45□□□□□ -1.22
CDT1-201ENST00000301019 LUZP6Q538Z0 58 aa7.43□□□□□ -1.22
CDT1-201ENST00000301019 LCE2DQ5TA82 110 aaPredicted RBP7.37□□□□□ -1.23
CDT1-201ENST00000301019 APOBP04114 4563 aaKnown RBP7.35□□□□□ -1.23
CDT1-201ENST00000301019 KRTAP10-8P60410 259 aa7.31□□□□□ -1.24
CDT1-201ENST00000301019 HSPG2P98160 4391 aa7.28□□□□□ -1.24
CDT1-201ENST00000301019 KRTAP10-4P60372 401 aaPredicted RBP7.26□□□□□ -1.25
CDT1-201ENST00000301019 KRTAP12-1P59990 96 aa7.26□□□□□ -1.25
CDT1-201ENST00000301019 LRP1Q07954 4544 aaKnown RBP7.25□□□□□ -1.25
CDT1-201ENST00000301019 EPPK1P58107 5090 aaKnown RBP7.21□□□□□ -1.26
CDT1-201ENST00000301019 LPAP08519 4548 aa7.21□□□□□ -1.26
CDT1-201ENST00000301019 RYR1P21817 5038 aa7.18□□□□□ -1.26
CDT1-201ENST00000301019 Q5VSD8 79 aa7.17□□□□□ -1.26
CDT1-201ENST00000301019 KIAA1109Q2LD37 5005 aa7.17□□□□□ -1.26
CDT1-201ENST00000301019 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
CDT1-201ENST00000301019 XP32Q5T750 250 aa7.14□□□□□ -1.27
CDT1-201ENST00000301019 KRTAP17-1Q9BYP8 105 aa7.14□□□□□ -1.27
CDT1-201ENST00000301019 FAT3Q8TDW7 4589 aa7.13□□□□□ -1.27
CDT1-201ENST00000301019 M0QZ58 72 aa7.05□□□□□ -1.28
CDT1-201ENST00000301019 PKHD1L1Q86WI1 4243 aa7.03□□□□□ -1.28
CDT1-201ENST00000301019 RPS29P62273 56 aaKnown RBP6.99□□□□□ -1.29
CDT1-201ENST00000301019 LRP2P98164 4655 aa6.95□□□□□ -1.3
CDT1-201ENST00000301019 LCE2CQ5TA81 110 aa6.95□□□□□ -1.3
CDT1-201ENST00000301019 KRTAP4-5Q9BYR2 181 aa6.95□□□□□ -1.3
CDT1-201ENST00000301019 R4GN34 69 aa6.94□□□□□ -1.3
CDT1-201ENST00000301019 TNXBP22105 4242 aa6.92□□□□□ -1.3
CDT1-201ENST00000301019 BIRC6Q9NR09 4857 aa6.91□□□□□ -1.3
CDT1-201ENST00000301019 MT1HL1P0DM35 61 aa6.89□□□□□ -1.31
CDT1-201ENST00000301019 KRTAP23-1A1A580 65 aa6.85□□□□□ -1.31
CDT1-201ENST00000301019 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.32
CDT1-201ENST00000301019 HERC2O95714 4834 aa6.83□□□□□ -1.32
CDT1-201ENST00000301019 ABCA13Q86UQ4 5058 aa6.82□□□□□ -1.32
CDT1-201ENST00000301019 LCE2AQ5TA79 106 aaPredicted RBP6.82□□□□□ -1.32
CDT1-201ENST00000301019 LCE2BO14633 110 aa6.8□□□□□ -1.32
CDT1-201ENST00000301019 CAMK2N1Q7Z7J9 78 aa6.76□□□□□ -1.33
CDT1-201ENST00000301019 PCLOQ9Y6V0 5065 aa6.62□□□□□ -1.35
CDT1-201ENST00000301019 MUC2Q02817 5179 aa6.61□□□□□ -1.35
CDT1-201ENST00000301019 HERC1Q15751 4861 aa6.46□□□□□ -1.38
CDT1-201ENST00000301019 PP632Q6XCG6 107 aa6.41□□□□□ -1.38
CDT1-201ENST00000301019 HMCN2Q8NDA2 5059 aa6.35□□□□□ -1.39
CDT1-201ENST00000301019 TNP1P09430 55 aa6.33□□□□□ -1.4
CDT1-201ENST00000301019 KRTAP4-1Q9BYQ7 146 aa6.24□□□□□ -1.41
CDT1-201ENST00000301019 FAT4Q6V0I7 4981 aa6.2□□□□□ -1.42
CDT1-201ENST00000301019 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
CDT1-201ENST00000301019 MUC17Q685J3 4493 aa6.19□□□□□ -1.42
CDT1-201ENST00000301019 SPRR5A0A1B0GTR4 108 aa6.13□□□□□ -1.43
CDT1-201ENST00000301019 UBR4Q5T4S7 5183 aa6.12□□□□□ -1.43
CDT1-201ENST00000301019 KRTAP19-2Q3LHN2 52 aa6.06□□□□□ -1.44
CDT1-201ENST00000301019 LCE3AQ5TA76 89 aa6.05□□□□□ -1.44
CDT1-201ENST00000301019 RNF213Q63HN8 5207 aa6.02□□□□□ -1.45
CDT1-201ENST00000301019 FLGP20930 4061 aaPredicted RBP5.89□□□□□ -1.47
CDT1-201ENST00000301019 INE1O15225 51 aa5.87□□□□□ -1.47
CDT1-201ENST00000301019 MT1HP80294 61 aa5.8□□□□□ -1.48
CDT1-201ENST00000301019 M0R2T5 61 aa5.78□□□□□ -1.48
CDT1-201ENST00000301019 KMT2DO14686 5537 aa5.76□□□□□ -1.49
CDT1-201ENST00000301019 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
CDT1-201ENST00000301019 KRTAP19-1Q8IUB9 90 aa5.64□□□□□ -1.51
CDT1-201ENST00000301019 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
CDT1-201ENST00000301019 KRTAP9-8Q9BYQ0 159 aa5.59□□□□□ -1.51
CDT1-201ENST00000301019 USH2AO75445 5202 aa5.58□□□□□ -1.52
CDT1-201ENST00000301019 MT2AP02795 61 aa5.57□□□□□ -1.52
CDT1-201ENST00000301019 MT1FP04733 61 aa5.55□□□□□ -1.52
CDT1-201ENST00000301019 KRTAP8-1Q8IUC2 63 aa5.54□□□□□ -1.52
CDT1-201ENST00000301019 KRTAP10-12P60413 245 aa5.53□□□□□ -1.52
CDT1-201ENST00000301019 SPRR2GQ9BYE4 73 aa5.49□□□□□ -1.53
CDT1-201ENST00000301019 KRTAP10-7P60409 375 aaPredicted RBP5.47□□□□□ -1.53
CDT1-201ENST00000301019 KRTAP9-3Q9BYQ3 159 aa5.38□□□□□ -1.55
CDT1-201ENST00000301019 KRTAP10-5P60370 271 aa5.38□□□□□ -1.55
CDT1-201ENST00000301019 MT1XP80297 61 aa5.36□□□□□ -1.55
CDT1-201ENST00000301019 KRTAP4-7Q9BYR0 210 aa5.32□□□□□ -1.56
CDT1-201ENST00000301019 KRTAP9-6A8MVA2 160 aa5.31□□□□□ -1.56
CDT1-201ENST00000301019 KRTAP19-8Q3LI54 63 aa5.3□□□□□ -1.56
CDT1-201ENST00000301019 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
CDT1-201ENST00000301019 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
CDT1-201ENST00000301019 MT1BP07438 61 aa5.25□□□□□ -1.57
CDT1-201ENST00000301019 OBSCNQ5VST9 7968 aa5.24□□□□□ -1.57
CDT1-201ENST00000301019 KRTAP4-8A0A0G2JLE6 195 aa5.19□□□□□ -1.58
CDT1-201ENST00000301019 KRTAP4-8Q9BYQ9 185 aa5.19□□□□□ -1.58
CDT1-201ENST00000301019 DSTQ03001 7570 aaKnown RBP5.17□□□□□ -1.58
CDT1-201ENST00000301019 FCGBPQ9Y6R7 5405 aaPredicted RBP5.12□□□□□ -1.59
CDT1-201ENST00000301019 FSIP2Q5CZC0 6907 aa5.12□□□□□ -1.59
CDT1-201ENST00000301019 SYNE1Q8NF91 8797 aaKnown RBP5.09□□□□□ -1.59
CDT1-201ENST00000301019 CRCT1Q9UGL9 99 aa5.04□□□□□ -1.6
CDT1-201ENST00000301019 KRTAP2-3P0C7H8 128 aa4.96□□□□□ -1.62
CDT1-201ENST00000301019 KRTAP2-4Q9BYR9 128 aa4.96□□□□□ -1.62
CDT1-201ENST00000301019 KRTAP2-1Q9BYU5 128 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms