RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 KRTAP10-8P60410 259 aa12.62□□□□□ -0.39
SPTSSA-201ENST00000298130 CRIPTQ9P021 101 aa12.62□□□□□ -0.39
SPTSSA-201ENST00000298130 Q5VSD8 79 aa12.59□□□□□ -0.39
SPTSSA-201ENST00000298130 KRTAP17-1Q9BYP8 105 aa12.56□□□□□ -0.4
SPTSSA-201ENST00000298130 KRTAP3-3Q9BYR6 98 aa12.55□□□□□ -0.4
SPTSSA-201ENST00000298130 XP32Q5T750 250 aa12.52□□□□□ -0.41
SPTSSA-201ENST00000298130 RYR3Q15413 4870 aa12.51□□□□□ -0.41
SPTSSA-201ENST00000298130 LPAP08519 4548 aa12.5□□□□□ -0.41
SPTSSA-201ENST00000298130 A0A0D9SG42 100 aa12.5□□□□□ -0.41
SPTSSA-201ENST00000298130 RPL37P61927 97 aaKnown RBP12.5□□□□□ -0.41
SPTSSA-201ENST00000298130 KRTAP13-4Q3LI77 160 aa12.47□□□□□ -0.41
SPTSSA-201ENST00000298130 KRTAP10-6P60371 365 aaPredicted RBP12.47□□□□□ -0.41
SPTSSA-201ENST00000298130 KIAA1109Q2LD37 5005 aa12.45□□□□□ -0.42
SPTSSA-201ENST00000298130 RYR1P21817 5038 aa12.42□□□□□ -0.42
SPTSSA-201ENST00000298130 KRTAP25-1Q3LHN0 102 aa12.39□□□□□ -0.43
SPTSSA-201ENST00000298130 S4R3F8 94 aa12.37□□□□□ -0.43
SPTSSA-201ENST00000298130 K7ERS5 55 aa12.36□□□□□ -0.43
SPTSSA-201ENST00000298130 KRTAP3-2Q9BYR7 98 aa12.36□□□□□ -0.43
SPTSSA-201ENST00000298130 P0C880 135 aa12.34□□□□□ -0.43
SPTSSA-201ENST00000298130 LRP2P98164 4655 aa12.32□□□□□ -0.44
SPTSSA-201ENST00000298130 MT1HL1P0DM35 61 aa12.23□□□□□ -0.45
SPTSSA-201ENST00000298130 ROMO1P60602 79 aa12.16□□□□□ -0.46
SPTSSA-201ENST00000298130 EPPK1P58107 5090 aaKnown RBP12.09□□□□□ -0.47
SPTSSA-201ENST00000298130 ABCA13Q86UQ4 5058 aa12.09□□□□□ -0.47
SPTSSA-201ENST00000298130 KRTAP12-2P59991 146 aa12.05□□□□□ -0.48
SPTSSA-201ENST00000298130 C10orf95Q9H7T3 257 aa12.05□□□□□ -0.48
SPTSSA-201ENST00000298130 SPINT4Q6UDR6 99 aa12.01□□□□□ -0.49
SPTSSA-201ENST00000298130 TPRXLQ17RH7 258 aa11.99□□□□□ -0.49
SPTSSA-201ENST00000298130 KRTAP4-5Q9BYR2 181 aa11.87□□□□□ -0.51
SPTSSA-201ENST00000298130 KRTAP12-1P59990 96 aa11.87□□□□□ -0.51
SPTSSA-201ENST00000298130 H3BS24 57 aa11.82□□□□□ -0.52
SPTSSA-201ENST00000298130 M0QZ58 72 aa11.65□□□□□ -0.54
SPTSSA-201ENST00000298130 LORP23490 312 aaPredicted RBP11.57□□□□□ -0.56
SPTSSA-201ENST00000298130 MUC17Q685J3 4493 aa11.56□□□□□ -0.56
SPTSSA-201ENST00000298130 KRTAP4-1Q9BYQ7 146 aa11.56□□□□□ -0.56
SPTSSA-201ENST00000298130 R4GN34 69 aa11.55□□□□□ -0.56
SPTSSA-201ENST00000298130 MUC2Q02817 5179 aa11.51□□□□□ -0.57
SPTSSA-201ENST00000298130 SEC61BP60468 96 aaKnown RBP11.41□□□□□ -0.58
SPTSSA-201ENST00000298130 HERC2O95714 4834 aa11.39□□□□□ -0.59
SPTSSA-201ENST00000298130 J3QL48 77 aa11.36□□□□□ -0.59
SPTSSA-201ENST00000298130 KRTAP15-1Q3LI76 137 aa11.31□□□□□ -0.6
SPTSSA-201ENST00000298130 NDUFAF8A1L188 74 aa11.23□□□□□ -0.61
SPTSSA-201ENST00000298130 KRTAP19-2Q3LHN2 52 aa11.18□□□□□ -0.62
SPTSSA-201ENST00000298130 CAMK2N1Q7Z7J9 78 aa11.01□□□□□ -0.65
SPTSSA-201ENST00000298130 HERC1Q15751 4861 aa10.99□□□□□ -0.65
SPTSSA-201ENST00000298130 PCLOQ9Y6V0 5065 aa10.97□□□□□ -0.65
SPTSSA-201ENST00000298130 FAT4Q6V0I7 4981 aa10.93□□□□□ -0.66
SPTSSA-201ENST00000298130 FLGP20930 4061 aaPredicted RBP10.92□□□□□ -0.66
SPTSSA-201ENST00000298130 BIRC6Q9NR09 4857 aa10.9□□□□□ -0.66
SPTSSA-201ENST00000298130 PLAC4Q8WY50 150 aa10.84□□□□□ -0.67
SPTSSA-201ENST00000298130 HMCN2Q8NDA2 5059 aa10.69□□□□□ -0.7
SPTSSA-201ENST00000298130 RNF213Q63HN8 5207 aa10.61□□□□□ -0.71
SPTSSA-201ENST00000298130 PP632Q6XCG6 107 aa10.54□□□□□ -0.72
SPTSSA-201ENST00000298130 LCE2CQ5TA81 110 aa10.51□□□□□ -0.73
SPTSSA-201ENST00000298130 TNP1P09430 55 aa10.48□□□□□ -0.73
SPTSSA-201ENST00000298130 UBR4Q5T4S7 5183 aa10.46□□□□□ -0.74
SPTSSA-201ENST00000298130 M0R2T5 61 aa10.44□□□□□ -0.74
SPTSSA-201ENST00000298130 KRTAP19-1Q8IUB9 90 aa10.34□□□□□ -0.75
SPTSSA-201ENST00000298130 LUZP6Q538Z0 58 aa10.3□□□□□ -0.76
SPTSSA-201ENST00000298130 SPRR2GQ9BYE4 73 aa10.25□□□□□ -0.77
SPTSSA-201ENST00000298130 MT1HP80294 61 aa10.23□□□□□ -0.77
SPTSSA-201ENST00000298130 KRTAP10-10P60014 251 aa10.18□□□□□ -0.78
SPTSSA-201ENST00000298130 MT1FP04733 61 aa10.17□□□□□ -0.78
SPTSSA-201ENST00000298130 MT2AP02795 61 aa10.1□□□□□ -0.79
SPTSSA-201ENST00000298130 LCE3AQ5TA76 89 aa10.06□□□□□ -0.8
SPTSSA-201ENST00000298130 KRTAP23-1A1A580 65 aa10.03□□□□□ -0.8
SPTSSA-201ENST00000298130 KRTAP9-8Q9BYQ0 159 aa10□□□□□ -0.81
SPTSSA-201ENST00000298130 SPRR5A0A1B0GTR4 108 aa9.91□□□□□ -0.82
SPTSSA-201ENST00000298130 MT1BP07438 61 aa9.79□□□□□ -0.84
SPTSSA-201ENST00000298130 KRTAP10-5P60370 271 aa9.75□□□□□ -0.85
SPTSSA-201ENST00000298130 A0A0A0MQY5 61 aa9.75□□□□□ -0.85
SPTSSA-201ENST00000298130 KRTAP19-8Q3LI54 63 aa9.75□□□□□ -0.85
SPTSSA-201ENST00000298130 MT1XP80297 61 aa9.74□□□□□ -0.85
SPTSSA-201ENST00000298130 KRTAP8-1Q8IUC2 63 aa9.61□□□□□ -0.87
SPTSSA-201ENST00000298130 KRTAP10-7P60409 375 aaPredicted RBP9.59□□□□□ -0.87
SPTSSA-201ENST00000298130 USH2AO75445 5202 aa9.57□□□□□ -0.88
SPTSSA-201ENST00000298130 KRTAP10-12P60413 245 aa9.56□□□□□ -0.88
SPTSSA-201ENST00000298130 KRTAP9-3Q9BYQ3 159 aa9.55□□□□□ -0.88
SPTSSA-201ENST00000298130 KRTAP12-3P60328 96 aa9.5□□□□□ -0.89
SPTSSA-201ENST00000298130 KMT2DO14686 5537 aa9.44□□□□□ -0.9
SPTSSA-201ENST00000298130 LCE2BO14633 110 aa9.27□□□□□ -0.93
SPTSSA-201ENST00000298130 PRO2289Q9P1D8 64 aa9.2□□□□□ -0.94
SPTSSA-201ENST00000298130 KRTAP19-5Q3LI72 72 aa9.16□□□□□ -0.94
SPTSSA-201ENST00000298130 KRTAP4-8A0A0G2JLE6 195 aa9.1□□□□□ -0.95
SPTSSA-201ENST00000298130 KRTAP4-8Q9BYQ9 185 aa9.1□□□□□ -0.95
SPTSSA-201ENST00000298130 LCE3CQ5T5A8 94 aa8.91□□□□□ -0.98
SPTSSA-201ENST00000298130 LCE2AQ5TA79 106 aaPredicted RBP8.89□□□□□ -0.99
SPTSSA-201ENST00000298130 KRTAP4-7Q9BYR0 210 aa8.79□□□□□ -1
SPTSSA-201ENST00000298130 KRTAP9-6A8MVA2 160 aa8.77□□□□□ -1.01
SPTSSA-201ENST00000298130 FSIP2Q5CZC0 6907 aa8.76□□□□□ -1.01
SPTSSA-201ENST00000298130 KRTAP19-7Q3SYF9 63 aa8.68□□□□□ -1.02
SPTSSA-201ENST00000298130 INE1O15225 51 aa8.67□□□□□ -1.02
SPTSSA-201ENST00000298130 SSPOA2VEC9 5147 aa8.57□□□□□ -1.04
SPTSSA-201ENST00000298130 MT1LQ93083 61 aa8.4□□□□□ -1.06
SPTSSA-201ENST00000298130 MT1EP04732 61 aa8.39□□□□□ -1.07
SPTSSA-201ENST00000298130 FCGBPQ9Y6R7 5405 aaPredicted RBP8.26□□□□□ -1.09
SPTSSA-201ENST00000298130 KRTAP2-3P0C7H8 128 aa8.24□□□□□ -1.09
SPTSSA-201ENST00000298130 KRTAP2-4Q9BYR9 128 aa8.24□□□□□ -1.09
SPTSSA-201ENST00000298130 KRTAP2-1Q9BYU5 128 aa8.24□□□□□ -1.09
SPTSSA-201ENST00000298130 MUC12Q9UKN1 5478 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms