RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 DNAH3Q8TD57 4116 aa4.97□□□□□ -1.61
SNIP1-201ENST00000296215 PRKDCP78527 4128 aaKnown RBP4.95□□□□□ -1.62
SNIP1-201ENST00000296215 DNAH10Q8IVF4 4471 aa4.95□□□□□ -1.62
SNIP1-201ENST00000296215 HUWE1Q7Z6Z7 4374 aaKnown RBP4.93□□□□□ -1.62
SNIP1-201ENST00000296215 SPRR5A0A1B0GTR4 108 aa4.92□□□□□ -1.62
SNIP1-201ENST00000296215 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
SNIP1-201ENST00000296215 LORP23490 312 aaPredicted RBP4.9□□□□□ -1.62
SNIP1-201ENST00000296215 KRTAP12-3P60328 96 aa4.87□□□□□ -1.63
SNIP1-201ENST00000296215 DYNC2H1Q8NCM8 4307 aaKnown RBP4.86□□□□□ -1.63
SNIP1-201ENST00000296215 LYSTQ99698 3801 aa4.84□□□□□ -1.63
SNIP1-201ENST00000296215 DNAH7Q8WXX0 4024 aa4.74□□□□□ -1.65
SNIP1-201ENST00000296215 PLECQ15149 4684 aaKnown RBP4.74□□□□□ -1.65
SNIP1-201ENST00000296215 KRTAP10-12P60413 245 aa4.74□□□□□ -1.65
SNIP1-201ENST00000296215 KRTAP4-5Q9BYR2 181 aa4.73□□□□□ -1.65
SNIP1-201ENST00000296215 DNAH8Q96JB1 4490 aa4.72□□□□□ -1.65
SNIP1-201ENST00000296215 RYR2Q92736 4967 aa4.72□□□□□ -1.65
SNIP1-201ENST00000296215 DNAH6Q9C0G6 4158 aa4.7□□□□□ -1.66
SNIP1-201ENST00000296215 STARD9Q9P2P6 4700 aa4.69□□□□□ -1.66
SNIP1-201ENST00000296215 BIRC6Q9NR09 4857 aa4.68□□□□□ -1.66
SNIP1-201ENST00000296215 FRAS1Q86XX4 4008 aa4.67□□□□□ -1.66
SNIP1-201ENST00000296215 SACSQ9NZJ4 4579 aa4.67□□□□□ -1.66
SNIP1-201ENST00000296215 VPS13DQ5THJ4 4388 aa4.65□□□□□ -1.66
SNIP1-201ENST00000296215 HECTD4Q9Y4D8 3996 aa4.64□□□□□ -1.67
SNIP1-201ENST00000296215 DNAH17Q9UFH2 4485 aa4.63□□□□□ -1.67
SNIP1-201ENST00000296215 KMT2CQ8NEZ4 4911 aaKnown RBP4.61□□□□□ -1.67
SNIP1-201ENST00000296215 DNAH11Q96DT5 4516 aa4.6□□□□□ -1.67
SNIP1-201ENST00000296215 DNAH2Q9P225 4427 aa4.59□□□□□ -1.68
SNIP1-201ENST00000296215 MT1HL1P0DM35 61 aa4.58□□□□□ -1.68
SNIP1-201ENST00000296215 KRTAP10-5P60370 271 aa4.58□□□□□ -1.68
SNIP1-201ENST00000296215 RYR3Q15413 4870 aa4.58□□□□□ -1.68
SNIP1-201ENST00000296215 KMT2AQ03164 3969 aa4.55□□□□□ -1.68
SNIP1-201ENST00000296215 DYNC1H1Q14204 4646 aaKnown RBP4.51□□□□□ -1.69
SNIP1-201ENST00000296215 KRTAP8-1Q8IUC2 63 aa4.5□□□□□ -1.69
SNIP1-201ENST00000296215 HYDINQ4G0P3 5121 aa4.49□□□□□ -1.69
SNIP1-201ENST00000296215 DNAH5Q8TE73 4624 aa4.49□□□□□ -1.69
SNIP1-201ENST00000296215 LRP1BQ9NZR2 4599 aa4.47□□□□□ -1.69
SNIP1-201ENST00000296215 EPPK1P58107 5090 aaKnown RBP4.46□□□□□ -1.7
SNIP1-201ENST00000296215 KRTAP17-1Q9BYP8 105 aa4.45□□□□□ -1.7
SNIP1-201ENST00000296215 HERC2O95714 4834 aa4.45□□□□□ -1.7
SNIP1-201ENST00000296215 CRCT1Q9UGL9 99 aa4.42□□□□□ -1.7
SNIP1-201ENST00000296215 RYR1P21817 5038 aa4.41□□□□□ -1.7
SNIP1-201ENST00000296215 KRTAP10-4P60372 401 aaPredicted RBP4.41□□□□□ -1.7
SNIP1-201ENST00000296215 FAT2Q9NYQ8 4349 aa4.4□□□□□ -1.7
SNIP1-201ENST00000296215 KIAA1109Q2LD37 5005 aa4.38□□□□□ -1.71
SNIP1-201ENST00000296215 VPS13BQ7Z7G8 4022 aa4.38□□□□□ -1.71
SNIP1-201ENST00000296215 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
SNIP1-201ENST00000296215 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
SNIP1-201ENST00000296215 PKD1P98161 4303 aa4.35□□□□□ -1.71
SNIP1-201ENST00000296215 FAT1Q14517 4588 aa4.34□□□□□ -1.72
SNIP1-201ENST00000296215 APOBP04114 4563 aaKnown RBP4.32□□□□□ -1.72
SNIP1-201ENST00000296215 HSPG2P98160 4391 aa4.31□□□□□ -1.72
SNIP1-201ENST00000296215 PCLOQ9Y6V0 5065 aa4.26□□□□□ -1.73
SNIP1-201ENST00000296215 PKHD1P08F94 4074 aa4.25□□□□□ -1.73
SNIP1-201ENST00000296215 ABCA13Q86UQ4 5058 aa4.21□□□□□ -1.74
SNIP1-201ENST00000296215 KRTAP9-6A0A140TA67 174 aa4.19□□□□□ -1.74
SNIP1-201ENST00000296215 PKHD1L1Q86WI1 4243 aa4.17□□□□□ -1.74
SNIP1-201ENST00000296215 SPRR2GQ9BYE4 73 aa4.16□□□□□ -1.74
SNIP1-201ENST00000296215 KRTAP19-5Q3LI72 72 aa4.15□□□□□ -1.74
SNIP1-201ENST00000296215 MYCBP2O75592 4640 aa4.11□□□□□ -1.75
SNIP1-201ENST00000296215 KRTAP9-2Q9BYQ4 174 aa4.11□□□□□ -1.75
SNIP1-201ENST00000296215 FAT3Q8TDW7 4589 aa4.09□□□□□ -1.75
SNIP1-201ENST00000296215 LRP1Q07954 4544 aaKnown RBP4.04□□□□□ -1.76
SNIP1-201ENST00000296215 KRTAP4-1Q9BYQ7 146 aa4.04□□□□□ -1.76
SNIP1-201ENST00000296215 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
SNIP1-201ENST00000296215 MT1HP80294 61 aa4.03□□□□□ -1.76
SNIP1-201ENST00000296215 LCE2DQ5TA82 110 aaPredicted RBP3.99□□□□□ -1.77
SNIP1-201ENST00000296215 TNXBP22105 4242 aa3.99□□□□□ -1.77
SNIP1-201ENST00000296215 HERC1Q15751 4861 aa3.99□□□□□ -1.77
SNIP1-201ENST00000296215 KRTAP19-4Q3LI73 84 aa3.96□□□□□ -1.78
SNIP1-201ENST00000296215 SPRR2EP22531 72 aa3.94□□□□□ -1.78
SNIP1-201ENST00000296215 SPRR2BP35325 72 aa3.94□□□□□ -1.78
SNIP1-201ENST00000296215 SPRR2AP35326 72 aa3.94□□□□□ -1.78
SNIP1-201ENST00000296215 KRTAP10-7P60409 375 aaPredicted RBP3.94□□□□□ -1.78
SNIP1-201ENST00000296215 HMCN2Q8NDA2 5059 aa3.92□□□□□ -1.78
SNIP1-201ENST00000296215 KRTAP19-1Q8IUB9 90 aa3.91□□□□□ -1.78
SNIP1-201ENST00000296215 PRM1P04553 51 aa3.9□□□□□ -1.79
SNIP1-201ENST00000296215 SYNE1Q8NF91 8797 aaKnown RBP3.87□□□□□ -1.79
SNIP1-201ENST00000296215 LPAP08519 4548 aa3.87□□□□□ -1.79
SNIP1-201ENST00000296215 MT2AP02795 61 aa3.86□□□□□ -1.79
SNIP1-201ENST00000296215 KRTAP2-3P0C7H8 128 aa3.86□□□□□ -1.79
SNIP1-201ENST00000296215 KRTAP2-4Q9BYR9 128 aa3.86□□□□□ -1.79
SNIP1-201ENST00000296215 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
SNIP1-201ENST00000296215 SPRR2DP22532 72 aa3.85□□□□□ -1.79
SNIP1-201ENST00000296215 KRTAP9-7A8MTY7 169 aa3.85□□□□□ -1.79
SNIP1-201ENST00000296215 MUC2Q02817 5179 aa3.85□□□□□ -1.79
SNIP1-201ENST00000296215 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
SNIP1-201ENST00000296215 LCE3BQ5TA77 95 aa3.85□□□□□ -1.79
SNIP1-201ENST00000296215 LRP2P98164 4655 aa3.84□□□□□ -1.79
SNIP1-201ENST00000296215 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.8
SNIP1-201ENST00000296215 MT1XP80297 61 aa3.82□□□□□ -1.8
SNIP1-201ENST00000296215 MUC17Q685J3 4493 aa3.78□□□□□ -1.8
SNIP1-201ENST00000296215 MT1FP04733 61 aa3.77□□□□□ -1.81
SNIP1-201ENST00000296215 LCE2CQ5TA81 110 aa3.77□□□□□ -1.81
SNIP1-201ENST00000296215 RNF213Q63HN8 5207 aa3.76□□□□□ -1.81
SNIP1-201ENST00000296215 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
SNIP1-201ENST00000296215 KRTAP19-8Q3LI54 63 aa3.74□□□□□ -1.81
SNIP1-201ENST00000296215 LCE2BO14633 110 aa3.72□□□□□ -1.81
SNIP1-201ENST00000296215 KRTAP4-7Q9BYR0 210 aa3.72□□□□□ -1.81
SNIP1-201ENST00000296215 UBR4Q5T4S7 5183 aa3.71□□□□□ -1.81
SNIP1-201ENST00000296215 LCE2AQ5TA79 106 aaPredicted RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms