RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 VPS13BQ7Z7G8 4022 aa5.22□□□□□ -1.57
CLDN1-201ENST00000295522 SACSQ9NZJ4 4579 aa5.21□□□□□ -1.58
CLDN1-201ENST00000295522 DNAH5Q8TE73 4624 aa5.19□□□□□ -1.58
CLDN1-201ENST00000295522 KRTAP3-2Q9BYR7 98 aa5.18□□□□□ -1.58
CLDN1-201ENST00000295522 PKHD1P08F94 4074 aa5.17□□□□□ -1.58
CLDN1-201ENST00000295522 KRTAP3-3Q9BYR6 98 aa5.17□□□□□ -1.58
CLDN1-201ENST00000295522 RPS29P62273 56 aaKnown RBP5.14□□□□□ -1.59
CLDN1-201ENST00000295522 RYR3Q15413 4870 aa5.14□□□□□ -1.59
CLDN1-201ENST00000295522 KRTAP12-1P59990 96 aa5.14□□□□□ -1.59
CLDN1-201ENST00000295522 FAT1Q14517 4588 aa5.13□□□□□ -1.59
CLDN1-201ENST00000295522 FAT2Q9NYQ8 4349 aa5.12□□□□□ -1.59
CLDN1-201ENST00000295522 KRTAP10-8P60410 259 aa5.12□□□□□ -1.59
CLDN1-201ENST00000295522 RYR2Q92736 4967 aa5.12□□□□□ -1.59
CLDN1-201ENST00000295522 PKD1P98161 4303 aa5.09□□□□□ -1.59
CLDN1-201ENST00000295522 PLAC4Q8WY50 150 aa5.09□□□□□ -1.59
CLDN1-201ENST00000295522 XP32Q5T750 250 aa5.06□□□□□ -1.6
CLDN1-201ENST00000295522 M0QZ58 72 aa5.06□□□□□ -1.6
CLDN1-201ENST00000295522 MYCBP2O75592 4640 aa5.05□□□□□ -1.6
CLDN1-201ENST00000295522 R4GN34 69 aa5.02□□□□□ -1.61
CLDN1-201ENST00000295522 DYNC1H1Q14204 4646 aaKnown RBP5.01□□□□□ -1.61
CLDN1-201ENST00000295522 EPPK1P58107 5090 aaKnown RBP4.99□□□□□ -1.61
CLDN1-201ENST00000295522 A0A1B0GVY2 172 aa4.96□□□□□ -1.61
CLDN1-201ENST00000295522 KIAA1109Q2LD37 5005 aa4.96□□□□□ -1.61
CLDN1-201ENST00000295522 APOBP04114 4563 aaKnown RBP4.93□□□□□ -1.62
CLDN1-201ENST00000295522 Q5VSD8 79 aa4.92□□□□□ -1.62
CLDN1-201ENST00000295522 LRP1Q07954 4544 aaKnown RBP4.92□□□□□ -1.62
CLDN1-201ENST00000295522 CAMK2N1Q7Z7J9 78 aa4.9□□□□□ -1.63
CLDN1-201ENST00000295522 KRTAP10-4P60372 401 aaPredicted RBP4.87□□□□□ -1.63
CLDN1-201ENST00000295522 HSPG2P98160 4391 aa4.87□□□□□ -1.63
CLDN1-201ENST00000295522 KRTAP17-1Q9BYP8 105 aa4.86□□□□□ -1.63
CLDN1-201ENST00000295522 FAT3Q8TDW7 4589 aa4.83□□□□□ -1.64
CLDN1-201ENST00000295522 RYR1P21817 5038 aa4.81□□□□□ -1.64
CLDN1-201ENST00000295522 KRTAP4-5Q9BYR2 181 aa4.77□□□□□ -1.65
CLDN1-201ENST00000295522 LPAP08519 4548 aa4.76□□□□□ -1.65
CLDN1-201ENST00000295522 LORP23490 312 aaPredicted RBP4.75□□□□□ -1.65
CLDN1-201ENST00000295522 LRP2P98164 4655 aa4.71□□□□□ -1.66
CLDN1-201ENST00000295522 PKHD1L1Q86WI1 4243 aa4.7□□□□□ -1.66
CLDN1-201ENST00000295522 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
CLDN1-201ENST00000295522 ABCA13Q86UQ4 5058 aa4.7□□□□□ -1.66
CLDN1-201ENST00000295522 SEC61BP60468 96 aaKnown RBP4.68□□□□□ -1.66
CLDN1-201ENST00000295522 HERC2O95714 4834 aa4.65□□□□□ -1.67
CLDN1-201ENST00000295522 BIRC6Q9NR09 4857 aa4.65□□□□□ -1.67
CLDN1-201ENST00000295522 PCLOQ9Y6V0 5065 aa4.62□□□□□ -1.67
CLDN1-201ENST00000295522 MT1HL1P0DM35 61 aa4.61□□□□□ -1.67
CLDN1-201ENST00000295522 TNP1P09430 55 aa4.6□□□□□ -1.67
CLDN1-201ENST00000295522 TNXBP22105 4242 aa4.6□□□□□ -1.67
CLDN1-201ENST00000295522 J3QL48 77 aa4.58□□□□□ -1.68
CLDN1-201ENST00000295522 HERC1Q15751 4861 aa4.54□□□□□ -1.68
CLDN1-201ENST00000295522 PRO2289Q9P1D8 64 aa4.43□□□□□ -1.7
CLDN1-201ENST00000295522 MUC2Q02817 5179 aa4.41□□□□□ -1.7
CLDN1-201ENST00000295522 KRTAP4-1Q9BYQ7 146 aa4.4□□□□□ -1.7
CLDN1-201ENST00000295522 SPRR5A0A1B0GTR4 108 aa4.34□□□□□ -1.71
CLDN1-201ENST00000295522 RNF213Q63HN8 5207 aa4.34□□□□□ -1.71
CLDN1-201ENST00000295522 M0R2T5 61 aa4.32□□□□□ -1.72
CLDN1-201ENST00000295522 UBR4Q5T4S7 5183 aa4.32□□□□□ -1.72
CLDN1-201ENST00000295522 HMCN2Q8NDA2 5059 aa4.28□□□□□ -1.72
CLDN1-201ENST00000295522 LCE3AQ5TA76 89 aa4.28□□□□□ -1.72
CLDN1-201ENST00000295522 INE1O15225 51 aa4.26□□□□□ -1.73
CLDN1-201ENST00000295522 KRTAP23-1A1A580 65 aa4.22□□□□□ -1.73
CLDN1-201ENST00000295522 LCE2DQ5TA82 110 aaPredicted RBP4.2□□□□□ -1.74
CLDN1-201ENST00000295522 FAT4Q6V0I7 4981 aa4.19□□□□□ -1.74
CLDN1-201ENST00000295522 MUC17Q685J3 4493 aa4.18□□□□□ -1.74
CLDN1-201ENST00000295522 KRTAP10-10P60014 251 aa4.09□□□□□ -1.75
CLDN1-201ENST00000295522 KRTAP19-2Q3LHN2 52 aa4.09□□□□□ -1.76
CLDN1-201ENST00000295522 KRTAP12-3P60328 96 aa4.04□□□□□ -1.76
CLDN1-201ENST00000295522 FLGP20930 4061 aaPredicted RBP4.02□□□□□ -1.77
CLDN1-201ENST00000295522 KRTAP19-1Q8IUB9 90 aa3.99□□□□□ -1.77
CLDN1-201ENST00000295522 KRTAP8-1Q8IUC2 63 aa3.98□□□□□ -1.77
CLDN1-201ENST00000295522 KRTAP10-12P60413 245 aa3.97□□□□□ -1.77
CLDN1-201ENST00000295522 SPRR2GQ9BYE4 73 aa3.96□□□□□ -1.78
CLDN1-201ENST00000295522 LCE2CQ5TA81 110 aa3.91□□□□□ -1.78
CLDN1-201ENST00000295522 MT1FP04733 61 aa3.89□□□□□ -1.79
CLDN1-201ENST00000295522 MT1HP80294 61 aa3.87□□□□□ -1.79
CLDN1-201ENST00000295522 MT2AP02795 61 aa3.86□□□□□ -1.79
CLDN1-201ENST00000295522 KRTAP10-7P60409 375 aaPredicted RBP3.83□□□□□ -1.8
CLDN1-201ENST00000295522 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
CLDN1-201ENST00000295522 MT1XP80297 61 aa3.8□□□□□ -1.8
CLDN1-201ENST00000295522 FSIP2Q5CZC0 6907 aa3.77□□□□□ -1.81
CLDN1-201ENST00000295522 KMT2DO14686 5537 aa3.76□□□□□ -1.81
CLDN1-201ENST00000295522 KRTAP19-5Q3LI72 72 aa3.75□□□□□ -1.81
CLDN1-201ENST00000295522 LCE3CQ5T5A8 94 aa3.75□□□□□ -1.81
CLDN1-201ENST00000295522 KRTAP9-8Q9BYQ0 159 aa3.75□□□□□ -1.81
CLDN1-201ENST00000295522 USH2AO75445 5202 aa3.74□□□□□ -1.81
CLDN1-201ENST00000295522 MT1BP07438 61 aa3.72□□□□□ -1.81
CLDN1-201ENST00000295522 LCE2AQ5TA79 106 aaPredicted RBP3.68□□□□□ -1.82
CLDN1-201ENST00000295522 KRTAP19-8Q3LI54 63 aa3.67□□□□□ -1.82
CLDN1-201ENST00000295522 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.82
CLDN1-201ENST00000295522 KRTAP9-6A8MVA2 160 aa3.65□□□□□ -1.83
CLDN1-201ENST00000295522 KRTAP4-8A0A0G2JLE6 195 aa3.61□□□□□ -1.83
CLDN1-201ENST00000295522 KRTAP4-8Q9BYQ9 185 aa3.61□□□□□ -1.83
CLDN1-201ENST00000295522 KRTAP9-3Q9BYQ3 159 aa3.57□□□□□ -1.84
CLDN1-201ENST00000295522 CRCT1Q9UGL9 99 aa3.54□□□□□ -1.84
CLDN1-201ENST00000295522 LCE2BO14633 110 aa3.52□□□□□ -1.85
CLDN1-201ENST00000295522 KRTAP2-3P0C7H8 128 aa3.51□□□□□ -1.85
CLDN1-201ENST00000295522 KRTAP2-4Q9BYR9 128 aa3.51□□□□□ -1.85
CLDN1-201ENST00000295522 KRTAP2-1Q9BYU5 128 aa3.51□□□□□ -1.85
CLDN1-201ENST00000295522 KRTAP12-4P60329 112 aa3.46□□□□□ -1.86
CLDN1-201ENST00000295522 SSPOA2VEC9 5147 aa3.45□□□□□ -1.86
CLDN1-201ENST00000295522 LOC100996750A0A140TA64 210 aa3.38□□□□□ -1.87
CLDN1-201ENST00000295522 DSTQ03001 7570 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms