RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
LMX1A-201ENST00000294816 KRTAP13-4Q3LI77 160 aa5.36□□□□□ -1.55
LMX1A-201ENST00000294816 LORP23490 312 aaPredicted RBP5.33□□□□□ -1.56
LMX1A-201ENST00000294816 KRTAP10-6P60371 365 aaPredicted RBP5.32□□□□□ -1.56
LMX1A-201ENST00000294816 PKD1P98161 4303 aa5.32□□□□□ -1.56
LMX1A-201ENST00000294816 NDUFAF8A1L188 74 aa5.32□□□□□ -1.56
LMX1A-201ENST00000294816 FAT2Q9NYQ8 4349 aa5.31□□□□□ -1.56
LMX1A-201ENST00000294816 HYDINQ4G0P3 5121 aa5.31□□□□□ -1.56
LMX1A-201ENST00000294816 S4R3F8 94 aa5.27□□□□□ -1.57
LMX1A-201ENST00000294816 FAT1Q14517 4588 aa5.23□□□□□ -1.57
LMX1A-201ENST00000294816 KRTAP12-2P59991 146 aa5.22□□□□□ -1.57
LMX1A-201ENST00000294816 PKHD1P08F94 4074 aa5.22□□□□□ -1.57
LMX1A-201ENST00000294816 KRTAP10-8P60410 259 aa5.21□□□□□ -1.57
LMX1A-201ENST00000294816 SACSQ9NZJ4 4579 aa5.21□□□□□ -1.57
LMX1A-201ENST00000294816 KRTAP15-1Q3LI76 137 aa5.19□□□□□ -1.58
LMX1A-201ENST00000294816 DYNC1H1Q14204 4646 aaKnown RBP5.16□□□□□ -1.58
LMX1A-201ENST00000294816 KRTAP12-1P59990 96 aa5.13□□□□□ -1.59
LMX1A-201ENST00000294816 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
LMX1A-201ENST00000294816 XP32Q5T750 250 aa5.1□□□□□ -1.59
LMX1A-201ENST00000294816 PKHD1L1Q86WI1 4243 aa5.09□□□□□ -1.59
LMX1A-201ENST00000294816 APOBP04114 4563 aaKnown RBP5.07□□□□□ -1.6
LMX1A-201ENST00000294816 MYCBP2O75592 4640 aa5.07□□□□□ -1.6
LMX1A-201ENST00000294816 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
LMX1A-201ENST00000294816 HSPG2P98160 4391 aa5.05□□□□□ -1.6
LMX1A-201ENST00000294816 LRP1Q07954 4544 aaKnown RBP5.03□□□□□ -1.6
LMX1A-201ENST00000294816 FAT3Q8TDW7 4589 aa5.03□□□□□ -1.6
LMX1A-201ENST00000294816 A0A1B0GVY2 172 aa5.02□□□□□ -1.61
LMX1A-201ENST00000294816 M0QZ58 72 aa5.01□□□□□ -1.61
LMX1A-201ENST00000294816 RYR2Q92736 4967 aa5.01□□□□□ -1.61
LMX1A-201ENST00000294816 SEC61BP60468 96 aaKnown RBP5.01□□□□□ -1.61
LMX1A-201ENST00000294816 Q5VSD8 79 aa4.96□□□□□ -1.61
LMX1A-201ENST00000294816 R4GN34 69 aa4.96□□□□□ -1.62
LMX1A-201ENST00000294816 PLAC4Q8WY50 150 aa4.92□□□□□ -1.62
LMX1A-201ENST00000294816 BIRC6Q9NR09 4857 aa4.92□□□□□ -1.62
LMX1A-201ENST00000294816 KMT2CQ8NEZ4 4911 aaKnown RBP4.9□□□□□ -1.63
LMX1A-201ENST00000294816 RYR3Q15413 4870 aa4.9□□□□□ -1.63
LMX1A-201ENST00000294816 TNXBP22105 4242 aa4.89□□□□□ -1.63
LMX1A-201ENST00000294816 LUZP6Q538Z0 58 aa4.86□□□□□ -1.63
LMX1A-201ENST00000294816 LPAP08519 4548 aa4.86□□□□□ -1.63
LMX1A-201ENST00000294816 LRP2P98164 4655 aa4.82□□□□□ -1.64
LMX1A-201ENST00000294816 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
LMX1A-201ENST00000294816 MT1HL1P0DM35 61 aa4.77□□□□□ -1.65
LMX1A-201ENST00000294816 HERC2O95714 4834 aa4.76□□□□□ -1.65
LMX1A-201ENST00000294816 KRTAP17-1Q9BYP8 105 aa4.74□□□□□ -1.65
LMX1A-201ENST00000294816 EPPK1P58107 5090 aaKnown RBP4.7□□□□□ -1.66
LMX1A-201ENST00000294816 PP632Q6XCG6 107 aa4.67□□□□□ -1.66
LMX1A-201ENST00000294816 KIAA1109Q2LD37 5005 aa4.66□□□□□ -1.66
LMX1A-201ENST00000294816 RYR1P21817 5038 aa4.66□□□□□ -1.66
LMX1A-201ENST00000294816 KRTAP4-1Q9BYQ7 146 aa4.57□□□□□ -1.68
LMX1A-201ENST00000294816 TNP1P09430 55 aa4.56□□□□□ -1.68
LMX1A-201ENST00000294816 ABCA13Q86UQ4 5058 aa4.55□□□□□ -1.68
LMX1A-201ENST00000294816 PCLOQ9Y6V0 5065 aa4.49□□□□□ -1.69
LMX1A-201ENST00000294816 KRTAP4-5Q9BYR2 181 aa4.48□□□□□ -1.69
LMX1A-201ENST00000294816 MUC17Q685J3 4493 aa4.48□□□□□ -1.69
LMX1A-201ENST00000294816 KRTAP19-2Q3LHN2 52 aa4.39□□□□□ -1.71
LMX1A-201ENST00000294816 SPRR5A0A1B0GTR4 108 aa4.37□□□□□ -1.71
LMX1A-201ENST00000294816 MUC2Q02817 5179 aa4.35□□□□□ -1.71
LMX1A-201ENST00000294816 LCE3AQ5TA76 89 aa4.28□□□□□ -1.72
LMX1A-201ENST00000294816 FLGP20930 4061 aaPredicted RBP4.27□□□□□ -1.73
LMX1A-201ENST00000294816 M0R2T5 61 aa4.24□□□□□ -1.73
LMX1A-201ENST00000294816 PRO2289Q9P1D8 64 aa4.22□□□□□ -1.73
LMX1A-201ENST00000294816 HERC1Q15751 4861 aa4.19□□□□□ -1.74
LMX1A-201ENST00000294816 HMCN2Q8NDA2 5059 aa4.17□□□□□ -1.74
LMX1A-201ENST00000294816 KRTAP19-1Q8IUB9 90 aa4.16□□□□□ -1.74
LMX1A-201ENST00000294816 SPRR2GQ9BYE4 73 aa4.15□□□□□ -1.74
LMX1A-201ENST00000294816 FAT4Q6V0I7 4981 aa4.13□□□□□ -1.75
LMX1A-201ENST00000294816 KRTAP10-10P60014 251 aa4.13□□□□□ -1.75
LMX1A-201ENST00000294816 INE1O15225 51 aa4.11□□□□□ -1.75
LMX1A-201ENST00000294816 KRTAP8-1Q8IUC2 63 aa4.06□□□□□ -1.76
LMX1A-201ENST00000294816 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
LMX1A-201ENST00000294816 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
LMX1A-201ENST00000294816 MT1FP04733 61 aa4.03□□□□□ -1.76
LMX1A-201ENST00000294816 KRTAP10-12P60413 245 aa4.01□□□□□ -1.77
LMX1A-201ENST00000294816 MT2AP02795 61 aa4□□□□□ -1.77
LMX1A-201ENST00000294816 MT1HP80294 61 aa3.98□□□□□ -1.77
LMX1A-201ENST00000294816 KRTAP10-5P60370 271 aa3.96□□□□□ -1.78
LMX1A-201ENST00000294816 MT1XP80297 61 aa3.95□□□□□ -1.78
LMX1A-201ENST00000294816 LCE4AQ5TA78 99 aa3.95□□□□□ -1.78
LMX1A-201ENST00000294816 RNF213Q63HN8 5207 aa3.93□□□□□ -1.78
LMX1A-201ENST00000294816 KRTAP9-4Q9BYQ2 154 aa3.93□□□□□ -1.78
LMX1A-201ENST00000294816 KRTAP10-7P60409 375 aaPredicted RBP3.92□□□□□ -1.78
LMX1A-201ENST00000294816 UBR4Q5T4S7 5183 aa3.91□□□□□ -1.78
LMX1A-201ENST00000294816 MT1BP07438 61 aa3.91□□□□□ -1.78
LMX1A-201ENST00000294816 KRTAP19-8Q3LI54 63 aa3.91□□□□□ -1.78
LMX1A-201ENST00000294816 KRTAP9-6A0A140TA67 174 aa3.9□□□□□ -1.79
LMX1A-201ENST00000294816 KRTAP9-7A8MTY7 169 aa3.9□□□□□ -1.79
LMX1A-201ENST00000294816 KRTAP9-8Q9BYQ0 159 aa3.9□□□□□ -1.79
LMX1A-201ENST00000294816 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
LMX1A-201ENST00000294816 KRTAP19-5Q3LI72 72 aa3.81□□□□□ -1.8
LMX1A-201ENST00000294816 LCE5AQ5TCM9 118 aa3.8□□□□□ -1.8
LMX1A-201ENST00000294816 LCE3CQ5T5A8 94 aa3.79□□□□□ -1.8
LMX1A-201ENST00000294816 KMT2DO14686 5537 aa3.71□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP9-3Q9BYQ3 159 aa3.71□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP9-2Q9BYQ4 174 aa3.71□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP9-6A8MVA2 160 aa3.68□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP4-8A0A0G2JLE6 195 aa3.67□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP4-8Q9BYQ9 185 aa3.67□□□□□ -1.82
LMX1A-201ENST00000294816 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.83
LMX1A-201ENST00000294816 USH2AO75445 5202 aa3.62□□□□□ -1.83
LMX1A-201ENST00000294816 KRTAP2-3P0C7H8 128 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms