RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 XP32Q5T750 250 aa9.57□□□□□ -0.88
SHKBP1-201ENST00000291842 RPL37P61927 97 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-201ENST00000291842 MT1HL1P0DM35 61 aa9.53□□□□□ -0.88
SHKBP1-201ENST00000291842 H0YAA0 97 aa9.47□□□□□ -0.89
SHKBP1-201ENST00000291842 EPPK1P58107 5090 aaKnown RBP9.46□□□□□ -0.9
SHKBP1-201ENST00000291842 ADM2Q7Z4H4 148 aa9.45□□□□□ -0.9
SHKBP1-201ENST00000291842 A0A1B0GU33 70 aa9.45□□□□□ -0.9
SHKBP1-201ENST00000291842 PRAC1Q96KF2 57 aa9.45□□□□□ -0.9
SHKBP1-201ENST00000291842 H1FX-AS1Q4G0G2 97 aa9.41□□□□□ -0.9
SHKBP1-201ENST00000291842 KRTAP3-3Q9BYR6 98 aa9.38□□□□□ -0.91
SHKBP1-201ENST00000291842 LPAP08519 4548 aa9.37□□□□□ -0.91
SHKBP1-201ENST00000291842 LRP2P98164 4655 aa9.33□□□□□ -0.92
SHKBP1-201ENST00000291842 KRTAP4-5Q9BYR2 181 aa9.3□□□□□ -0.92
SHKBP1-201ENST00000291842 S4R3F8 94 aa9.3□□□□□ -0.92
SHKBP1-201ENST00000291842 LINC01554Q52M75 96 aa9.27□□□□□ -0.93
SHKBP1-201ENST00000291842 ABCA13Q86UQ4 5058 aa9.24□□□□□ -0.93
SHKBP1-201ENST00000291842 KRTAP10-6P60371 365 aaPredicted RBP9.24□□□□□ -0.93
SHKBP1-201ENST00000291842 TPRXLQ17RH7 258 aa9.22□□□□□ -0.93
SHKBP1-201ENST00000291842 KRTAP3-2Q9BYR7 98 aa9.19□□□□□ -0.94
SHKBP1-201ENST00000291842 KRTAP13-4Q3LI77 160 aa9.16□□□□□ -0.94
SHKBP1-201ENST00000291842 CSAG1Q6PB30 78 aa9.14□□□□□ -0.95
SHKBP1-201ENST00000291842 P0C880 135 aa9.13□□□□□ -0.95
SHKBP1-201ENST00000291842 A0A0D9SG42 100 aa9.11□□□□□ -0.95
SHKBP1-201ENST00000291842 K7ERS5 55 aa9.05□□□□□ -0.96
SHKBP1-201ENST00000291842 J3QL48 77 aa8.95□□□□□ -0.98
SHKBP1-201ENST00000291842 CRIPTQ9P021 101 aa8.95□□□□□ -0.98
SHKBP1-201ENST00000291842 HERC2O95714 4834 aa8.91□□□□□ -0.98
SHKBP1-201ENST00000291842 SEC61BP60468 96 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-201ENST00000291842 KRTAP4-1Q9BYQ7 146 aa8.87□□□□□ -0.99
SHKBP1-201ENST00000291842 KRTAP25-1Q3LHN0 102 aa8.87□□□□□ -0.99
SHKBP1-201ENST00000291842 MUC17Q685J3 4493 aa8.86□□□□□ -0.99
SHKBP1-201ENST00000291842 KRTAP12-2P59991 146 aa8.84□□□□□ -0.99
SHKBP1-201ENST00000291842 ROMO1P60602 79 aa8.84□□□□□ -0.99
SHKBP1-201ENST00000291842 SPINT4Q6UDR6 99 aa8.79□□□□□ -1
SHKBP1-201ENST00000291842 KRTAP12-1P59990 96 aa8.76□□□□□ -1.01
SHKBP1-201ENST00000291842 M0QZ58 72 aa8.73□□□□□ -1.01
SHKBP1-201ENST00000291842 MUC2Q02817 5179 aa8.67□□□□□ -1.02
SHKBP1-201ENST00000291842 BIRC6Q9NR09 4857 aa8.65□□□□□ -1.02
SHKBP1-201ENST00000291842 R4GN34 69 aa8.64□□□□□ -1.03
SHKBP1-201ENST00000291842 LORP23490 312 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-201ENST00000291842 KRTAP19-2Q3LHN2 52 aa8.63□□□□□ -1.03
SHKBP1-201ENST00000291842 C10orf95Q9H7T3 257 aa8.62□□□□□ -1.03
SHKBP1-201ENST00000291842 A0A0A0MQY5 61 aa8.61□□□□□ -1.03
SHKBP1-201ENST00000291842 HERC1Q15751 4861 aa8.55□□□□□ -1.04
SHKBP1-201ENST00000291842 PCLOQ9Y6V0 5065 aa8.48□□□□□ -1.05
SHKBP1-201ENST00000291842 HMCN2Q8NDA2 5059 aa8.38□□□□□ -1.07
SHKBP1-201ENST00000291842 FLGP20930 4061 aaPredicted RBP8.37□□□□□ -1.07
SHKBP1-201ENST00000291842 FAT4Q6V0I7 4981 aa8.26□□□□□ -1.09
SHKBP1-201ENST00000291842 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
SHKBP1-201ENST00000291842 CAMK2N1Q7Z7J9 78 aa8.19□□□□□ -1.1
SHKBP1-201ENST00000291842 NDUFAF8A1L188 74 aa8.14□□□□□ -1.11
SHKBP1-201ENST00000291842 RNF213Q63HN8 5207 aa8.1□□□□□ -1.11
SHKBP1-201ENST00000291842 UBR4Q5T4S7 5183 aa8.07□□□□□ -1.12
SHKBP1-201ENST00000291842 M0R2T5 61 aa8.05□□□□□ -1.12
SHKBP1-201ENST00000291842 KRTAP15-1Q3LI76 137 aa8.05□□□□□ -1.12
SHKBP1-201ENST00000291842 MT1HP80294 61 aa7.99□□□□□ -1.13
SHKBP1-201ENST00000291842 KRTAP19-1Q8IUB9 90 aa7.91□□□□□ -1.14
SHKBP1-201ENST00000291842 SPRR2GQ9BYE4 73 aa7.89□□□□□ -1.15
SHKBP1-201ENST00000291842 LUZP6Q538Z0 58 aa7.88□□□□□ -1.15
SHKBP1-201ENST00000291842 MT1FP04733 61 aa7.84□□□□□ -1.15
SHKBP1-201ENST00000291842 KRTAP10-10P60014 251 aa7.84□□□□□ -1.15
SHKBP1-201ENST00000291842 MT2AP02795 61 aa7.82□□□□□ -1.16
SHKBP1-201ENST00000291842 PP632Q6XCG6 107 aa7.82□□□□□ -1.16
SHKBP1-201ENST00000291842 TNP1P09430 55 aa7.82□□□□□ -1.16
SHKBP1-201ENST00000291842 PLAC4Q8WY50 150 aa7.82□□□□□ -1.16
SHKBP1-201ENST00000291842 KRTAP9-8Q9BYQ0 159 aa7.78□□□□□ -1.16
SHKBP1-201ENST00000291842 KRTAP23-1A1A580 65 aa7.57□□□□□ -1.2
SHKBP1-201ENST00000291842 KRTAP19-8Q3LI54 63 aa7.55□□□□□ -1.2
SHKBP1-201ENST00000291842 MT1BP07438 61 aa7.52□□□□□ -1.21
SHKBP1-201ENST00000291842 LCE3AQ5TA76 89 aa7.48□□□□□ -1.21
SHKBP1-201ENST00000291842 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
SHKBP1-201ENST00000291842 KRTAP10-5P60370 271 aa7.44□□□□□ -1.22
SHKBP1-201ENST00000291842 MT1XP80297 61 aa7.43□□□□□ -1.22
SHKBP1-201ENST00000291842 KRTAP10-7P60409 375 aaPredicted RBP7.25□□□□□ -1.25
SHKBP1-201ENST00000291842 SPRR5A0A1B0GTR4 108 aa7.24□□□□□ -1.25
SHKBP1-201ENST00000291842 KRTAP10-12P60413 245 aa7.22□□□□□ -1.25
SHKBP1-201ENST00000291842 KRTAP8-1Q8IUC2 63 aa7.22□□□□□ -1.25
SHKBP1-201ENST00000291842 LCE2BO14633 110 aa7.22□□□□□ -1.25
SHKBP1-201ENST00000291842 USH2AO75445 5202 aa7.16□□□□□ -1.26
SHKBP1-201ENST00000291842 LCE2AQ5TA79 106 aaPredicted RBP7.16□□□□□ -1.26
SHKBP1-201ENST00000291842 PRO2289Q9P1D8 64 aa7.13□□□□□ -1.27
SHKBP1-201ENST00000291842 KRTAP12-3P60328 96 aa7.1□□□□□ -1.27
SHKBP1-201ENST00000291842 KMT2DO14686 5537 aa6.96□□□□□ -1.3
SHKBP1-201ENST00000291842 KRTAP19-5Q3LI72 72 aa6.9□□□□□ -1.3
SHKBP1-201ENST00000291842 KRTAP4-8A0A0G2JLE6 195 aa6.87□□□□□ -1.31
SHKBP1-201ENST00000291842 KRTAP4-8Q9BYQ9 185 aa6.87□□□□□ -1.31
SHKBP1-201ENST00000291842 LCE3CQ5T5A8 94 aa6.67□□□□□ -1.34
SHKBP1-201ENST00000291842 SSPOA2VEC9 5147 aa6.64□□□□□ -1.35
SHKBP1-201ENST00000291842 FSIP2Q5CZC0 6907 aa6.62□□□□□ -1.35
SHKBP1-201ENST00000291842 KRTAP19-7Q3SYF9 63 aa6.62□□□□□ -1.35
SHKBP1-201ENST00000291842 KRTAP4-7Q9BYR0 210 aa6.52□□□□□ -1.37
SHKBP1-201ENST00000291842 KRTAP9-6A8MVA2 160 aa6.46□□□□□ -1.37
SHKBP1-201ENST00000291842 KRTAP19-6Q3LI70 58 aa6.46□□□□□ -1.37
SHKBP1-201ENST00000291842 INE1O15225 51 aa6.45□□□□□ -1.38
SHKBP1-201ENST00000291842 MT1EP04732 61 aa6.43□□□□□ -1.38
SHKBP1-201ENST00000291842 MT1LQ93083 61 aa6.4□□□□□ -1.38
SHKBP1-201ENST00000291842 FCGBPQ9Y6R7 5405 aaPredicted RBP6.23□□□□□ -1.41
SHKBP1-201ENST00000291842 KRTAP19-4Q3LI73 84 aa6.2□□□□□ -1.42
SHKBP1-201ENST00000291842 LCE2DQ5TA82 110 aaPredicted RBP6.17□□□□□ -1.42
SHKBP1-201ENST00000291842 MUC12Q9UKN1 5478 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms