RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 KRTAP10-4P60372 401 aaPredicted RBP5.17□□□□□ -1.58
PKNOX1-201ENST00000291547 LYSTQ99698 3801 aa5.17□□□□□ -1.58
PKNOX1-201ENST00000291547 INE1O15225 51 aa5.16□□□□□ -1.58
PKNOX1-201ENST00000291547 KRTAP3-1Q9BYR8 98 aa5.16□□□□□ -1.58
PKNOX1-201ENST00000291547 KRTAP10-6P60371 365 aaPredicted RBP5.13□□□□□ -1.59
PKNOX1-201ENST00000291547 DNAH10Q8IVF4 4471 aa5.12□□□□□ -1.59
PKNOX1-201ENST00000291547 DNAH17Q9UFH2 4485 aa5.11□□□□□ -1.59
PKNOX1-201ENST00000291547 DNAH5Q8TE73 4624 aa5.1□□□□□ -1.59
PKNOX1-201ENST00000291547 MT1HL1P0DM35 61 aa5.09□□□□□ -1.6
PKNOX1-201ENST00000291547 DYNC2H1Q8NCM8 4307 aaKnown RBP5.08□□□□□ -1.6
PKNOX1-201ENST00000291547 DNAH11Q96DT5 4516 aa5.07□□□□□ -1.6
PKNOX1-201ENST00000291547 KRTAP4-5Q9BYR2 181 aa5.06□□□□□ -1.6
PKNOX1-201ENST00000291547 DNAH7Q8WXX0 4024 aa5.05□□□□□ -1.6
PKNOX1-201ENST00000291547 KMT2AQ03164 3969 aa5.03□□□□□ -1.6
PKNOX1-201ENST00000291547 DYNC1H1Q14204 4646 aaKnown RBP5.02□□□□□ -1.61
PKNOX1-201ENST00000291547 DNAH2Q9P225 4427 aa4.99□□□□□ -1.61
PKNOX1-201ENST00000291547 LRP1BQ9NZR2 4599 aa4.98□□□□□ -1.61
PKNOX1-201ENST00000291547 DNAH6Q9C0G6 4158 aa4.98□□□□□ -1.61
PKNOX1-201ENST00000291547 KRTAP3-2Q9BYR7 98 aa4.97□□□□□ -1.61
PKNOX1-201ENST00000291547 SACSQ9NZJ4 4579 aa4.92□□□□□ -1.62
PKNOX1-201ENST00000291547 FAT2Q9NYQ8 4349 aa4.91□□□□□ -1.62
PKNOX1-201ENST00000291547 RYR2Q92736 4967 aa4.89□□□□□ -1.63
PKNOX1-201ENST00000291547 FAT1Q14517 4588 aa4.89□□□□□ -1.63
PKNOX1-201ENST00000291547 KRTAP3-3Q9BYR6 98 aa4.86□□□□□ -1.63
PKNOX1-201ENST00000291547 HYDINQ4G0P3 5121 aa4.86□□□□□ -1.63
PKNOX1-201ENST00000291547 DNAH8Q96JB1 4490 aa4.85□□□□□ -1.63
PKNOX1-201ENST00000291547 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
PKNOX1-201ENST00000291547 HECTD4Q9Y4D8 3996 aa4.82□□□□□ -1.64
PKNOX1-201ENST00000291547 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
PKNOX1-201ENST00000291547 FRAS1Q86XX4 4008 aa4.8□□□□□ -1.64
PKNOX1-201ENST00000291547 KRTAP10-12P60413 245 aa4.79□□□□□ -1.64
PKNOX1-201ENST00000291547 RYR3Q15413 4870 aa4.78□□□□□ -1.64
PKNOX1-201ENST00000291547 KIAA1109Q2LD37 5005 aa4.78□□□□□ -1.64
PKNOX1-201ENST00000291547 VPS13BQ7Z7G8 4022 aa4.76□□□□□ -1.65
PKNOX1-201ENST00000291547 RYR1P21817 5038 aa4.76□□□□□ -1.65
PKNOX1-201ENST00000291547 APOBP04114 4563 aaKnown RBP4.76□□□□□ -1.65
PKNOX1-201ENST00000291547 KRTAP17-1Q9BYP8 105 aa4.74□□□□□ -1.65
PKNOX1-201ENST00000291547 KRTAP12-3P60328 96 aa4.71□□□□□ -1.66
PKNOX1-201ENST00000291547 KMT2CQ8NEZ4 4911 aaKnown RBP4.71□□□□□ -1.66
PKNOX1-201ENST00000291547 PKD1P98161 4303 aa4.69□□□□□ -1.66
PKNOX1-201ENST00000291547 PKHD1P08F94 4074 aa4.67□□□□□ -1.66
PKNOX1-201ENST00000291547 BIRC6Q9NR09 4857 aa4.63□□□□□ -1.67
PKNOX1-201ENST00000291547 HSPG2P98160 4391 aa4.62□□□□□ -1.67
PKNOX1-201ENST00000291547 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
PKNOX1-201ENST00000291547 LRP1Q07954 4544 aaKnown RBP4.59□□□□□ -1.67
PKNOX1-201ENST00000291547 KRTAP10-5P60370 271 aa4.55□□□□□ -1.68
PKNOX1-201ENST00000291547 HERC2O95714 4834 aa4.54□□□□□ -1.68
PKNOX1-201ENST00000291547 KRTAP4-1Q9BYQ7 146 aa4.53□□□□□ -1.68
PKNOX1-201ENST00000291547 EPPK1P58107 5090 aaKnown RBP4.51□□□□□ -1.69
PKNOX1-201ENST00000291547 LORP23490 312 aaPredicted RBP4.49□□□□□ -1.69
PKNOX1-201ENST00000291547 FAT3Q8TDW7 4589 aa4.48□□□□□ -1.69
PKNOX1-201ENST00000291547 MYCBP2O75592 4640 aa4.46□□□□□ -1.7
PKNOX1-201ENST00000291547 SPRR5A0A1B0GTR4 108 aa4.4□□□□□ -1.7
PKNOX1-201ENST00000291547 TNXBP22105 4242 aa4.36□□□□□ -1.71
PKNOX1-201ENST00000291547 ABCA13Q86UQ4 5058 aa4.36□□□□□ -1.71
PKNOX1-201ENST00000291547 PKHD1L1Q86WI1 4243 aa4.35□□□□□ -1.71
PKNOX1-201ENST00000291547 MT1HP80294 61 aa4.35□□□□□ -1.71
PKNOX1-201ENST00000291547 KRTAP8-1Q8IUC2 63 aa4.34□□□□□ -1.71
PKNOX1-201ENST00000291547 LRP2P98164 4655 aa4.3□□□□□ -1.72
PKNOX1-201ENST00000291547 HERC1Q15751 4861 aa4.28□□□□□ -1.72
PKNOX1-201ENST00000291547 LPAP08519 4548 aa4.24□□□□□ -1.73
PKNOX1-201ENST00000291547 PCLOQ9Y6V0 5065 aa4.23□□□□□ -1.73
PKNOX1-201ENST00000291547 MT2AP02795 61 aa4.22□□□□□ -1.73
PKNOX1-201ENST00000291547 MT1FP04733 61 aa4.16□□□□□ -1.74
PKNOX1-201ENST00000291547 LCE2CQ5TA81 110 aa4.13□□□□□ -1.75
PKNOX1-201ENST00000291547 SPRR2GQ9BYE4 73 aa4.12□□□□□ -1.75
PKNOX1-201ENST00000291547 KRTAP19-2Q3LHN2 52 aa4.07□□□□□ -1.76
PKNOX1-201ENST00000291547 KRTAP19-5Q3LI72 72 aa4.07□□□□□ -1.76
PKNOX1-201ENST00000291547 KRTAP10-7P60409 375 aaPredicted RBP4.05□□□□□ -1.76
PKNOX1-201ENST00000291547 LCE3CQ5T5A8 94 aa4.05□□□□□ -1.76
PKNOX1-201ENST00000291547 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
PKNOX1-201ENST00000291547 HMCN2Q8NDA2 5059 aa4.03□□□□□ -1.76
PKNOX1-201ENST00000291547 KRTAP9-8Q9BYQ0 159 aa4.01□□□□□ -1.77
PKNOX1-201ENST00000291547 SPRR2FQ96RM1 72 aa4□□□□□ -1.77
PKNOX1-201ENST00000291547 KRTAP19-1Q8IUB9 90 aa3.99□□□□□ -1.77
PKNOX1-201ENST00000291547 RNF213Q63HN8 5207 aa3.97□□□□□ -1.77
PKNOX1-201ENST00000291547 KRTAP19-8Q3LI54 63 aa3.95□□□□□ -1.78
PKNOX1-201ENST00000291547 FLGP20930 4061 aaPredicted RBP3.94□□□□□ -1.78
PKNOX1-201ENST00000291547 KRTAP19-4Q3LI73 84 aa3.94□□□□□ -1.78
PKNOX1-201ENST00000291547 KRTAP9-3Q9BYQ3 159 aa3.9□□□□□ -1.79
PKNOX1-201ENST00000291547 FAT4Q6V0I7 4981 aa3.89□□□□□ -1.79
PKNOX1-201ENST00000291547 UBR4Q5T4S7 5183 aa3.88□□□□□ -1.79
PKNOX1-201ENST00000291547 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
PKNOX1-201ENST00000291547 MT1BP07438 61 aa3.86□□□□□ -1.79
PKNOX1-201ENST00000291547 MUC2Q02817 5179 aa3.85□□□□□ -1.79
PKNOX1-201ENST00000291547 LCE3BQ5TA77 95 aa3.84□□□□□ -1.79
PKNOX1-201ENST00000291547 LCE2AQ5TA79 106 aaPredicted RBP3.83□□□□□ -1.8
PKNOX1-201ENST00000291547 MT1XP80297 61 aa3.78□□□□□ -1.8
PKNOX1-201ENST00000291547 LCE2BO14633 110 aa3.77□□□□□ -1.81
PKNOX1-201ENST00000291547 MT1GP13640 62 aa3.73□□□□□ -1.81
PKNOX1-201ENST00000291547 SYNE1Q8NF91 8797 aaKnown RBP3.68□□□□□ -1.82
PKNOX1-201ENST00000291547 SPRR2EP22531 72 aa3.68□□□□□ -1.82
PKNOX1-201ENST00000291547 SPRR2BP35325 72 aa3.68□□□□□ -1.82
PKNOX1-201ENST00000291547 SPRR2AP35326 72 aa3.68□□□□□ -1.82
PKNOX1-201ENST00000291547 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
PKNOX1-201ENST00000291547 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
PKNOX1-201ENST00000291547 LCE2DQ5TA82 110 aaPredicted RBP3.62□□□□□ -1.83
PKNOX1-201ENST00000291547 KRTAP9-2Q9BYQ4 174 aa3.6□□□□□ -1.83
PKNOX1-201ENST00000291547 KRTAP4-8A0A0G2JLE6 195 aa3.59□□□□□ -1.84
PKNOX1-201ENST00000291547 KRTAP4-8Q9BYQ9 185 aa3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms