RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 RPL37P61927 97 aaKnown RBP6.69□□□□□ -1.34
COL8A1-202ENST00000273342 KMT2CQ8NEZ4 4911 aaKnown RBP6.69□□□□□ -1.34
COL8A1-202ENST00000273342 SPINT4Q6UDR6 99 aa6.68□□□□□ -1.34
COL8A1-202ENST00000273342 A0A0A0MQY5 61 aa6.68□□□□□ -1.34
COL8A1-202ENST00000273342 KRTAP10-6P60371 365 aaPredicted RBP6.68□□□□□ -1.34
COL8A1-202ENST00000273342 TPRXLQ17RH7 258 aa6.66□□□□□ -1.34
COL8A1-202ENST00000273342 KRTAP3-3Q9BYR6 98 aa6.65□□□□□ -1.35
COL8A1-202ENST00000273342 KRTAP10-8P60410 259 aa6.64□□□□□ -1.35
COL8A1-202ENST00000273342 APOBP04114 4563 aaKnown RBP6.63□□□□□ -1.35
COL8A1-202ENST00000273342 HSPG2P98160 4391 aa6.62□□□□□ -1.35
COL8A1-202ENST00000273342 KRTAP10-4P60372 401 aaPredicted RBP6.6□□□□□ -1.35
COL8A1-202ENST00000273342 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.35
COL8A1-202ENST00000273342 FAT3Q8TDW7 4589 aa6.59□□□□□ -1.36
COL8A1-202ENST00000273342 S4R3F8 94 aa6.57□□□□□ -1.36
COL8A1-202ENST00000273342 PKHD1L1Q86WI1 4243 aa6.56□□□□□ -1.36
COL8A1-202ENST00000273342 A0A1B0GVY2 172 aa6.55□□□□□ -1.36
COL8A1-202ENST00000273342 KRTAP12-2P59991 146 aa6.54□□□□□ -1.36
COL8A1-202ENST00000273342 Q5VSD8 79 aa6.52□□□□□ -1.37
COL8A1-202ENST00000273342 NDUFAF8A1L188 74 aa6.5□□□□□ -1.37
COL8A1-202ENST00000273342 LPAP08519 4548 aa6.47□□□□□ -1.37
COL8A1-202ENST00000273342 XP32Q5T750 250 aa6.47□□□□□ -1.37
COL8A1-202ENST00000273342 KIAA1109Q2LD37 5005 aa6.46□□□□□ -1.38
COL8A1-202ENST00000273342 RYR2Q92736 4967 aa6.44□□□□□ -1.38
COL8A1-202ENST00000273342 KRTAP12-1P59990 96 aa6.41□□□□□ -1.38
COL8A1-202ENST00000273342 KRTAP17-1Q9BYP8 105 aa6.4□□□□□ -1.38
COL8A1-202ENST00000273342 TNXBP22105 4242 aa6.38□□□□□ -1.39
COL8A1-202ENST00000273342 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
COL8A1-202ENST00000273342 RYR3Q15413 4870 aa6.36□□□□□ -1.39
COL8A1-202ENST00000273342 LRP2P98164 4655 aa6.36□□□□□ -1.39
COL8A1-202ENST00000273342 RYR1P21817 5038 aa6.33□□□□□ -1.4
COL8A1-202ENST00000273342 M0QZ58 72 aa6.25□□□□□ -1.41
COL8A1-202ENST00000273342 ABCA13Q86UQ4 5058 aa6.22□□□□□ -1.41
COL8A1-202ENST00000273342 EPPK1P58107 5090 aaKnown RBP6.2□□□□□ -1.42
COL8A1-202ENST00000273342 R4GN34 69 aa6.19□□□□□ -1.42
COL8A1-202ENST00000273342 MT1HL1P0DM35 61 aa6.18□□□□□ -1.42
COL8A1-202ENST00000273342 KRTAP4-5Q9BYR2 181 aa6.17□□□□□ -1.42
COL8A1-202ENST00000273342 J3QL48 77 aa6.14□□□□□ -1.43
COL8A1-202ENST00000273342 LORP23490 312 aaPredicted RBP6.13□□□□□ -1.43
COL8A1-202ENST00000273342 MUC2Q02817 5179 aa6.11□□□□□ -1.43
COL8A1-202ENST00000273342 PLAC4Q8WY50 150 aa6.05□□□□□ -1.44
COL8A1-202ENST00000273342 SEC61BP60468 96 aaKnown RBP6.04□□□□□ -1.44
COL8A1-202ENST00000273342 CAMK2N1Q7Z7J9 78 aa5.95□□□□□ -1.46
COL8A1-202ENST00000273342 KRTAP4-1Q9BYQ7 146 aa5.9□□□□□ -1.46
COL8A1-202ENST00000273342 HERC2O95714 4834 aa5.86□□□□□ -1.47
COL8A1-202ENST00000273342 LUZP6Q538Z0 58 aa5.85□□□□□ -1.47
COL8A1-202ENST00000273342 MUC17Q685J3 4493 aa5.83□□□□□ -1.48
COL8A1-202ENST00000273342 FAT4Q6V0I7 4981 aa5.77□□□□□ -1.49
COL8A1-202ENST00000273342 HERC1Q15751 4861 aa5.74□□□□□ -1.49
COL8A1-202ENST00000273342 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
COL8A1-202ENST00000273342 PP632Q6XCG6 107 aa5.71□□□□□ -1.5
COL8A1-202ENST00000273342 RNF213Q63HN8 5207 aa5.67□□□□□ -1.5
COL8A1-202ENST00000273342 KRTAP19-2Q3LHN2 52 aa5.65□□□□□ -1.5
COL8A1-202ENST00000273342 TNP1P09430 55 aa5.64□□□□□ -1.51
COL8A1-202ENST00000273342 PCLOQ9Y6V0 5065 aa5.63□□□□□ -1.51
COL8A1-202ENST00000273342 M0R2T5 61 aa5.58□□□□□ -1.52
COL8A1-202ENST00000273342 FLGP20930 4061 aaPredicted RBP5.5□□□□□ -1.53
COL8A1-202ENST00000273342 UBR4Q5T4S7 5183 aa5.47□□□□□ -1.53
COL8A1-202ENST00000273342 HMCN2Q8NDA2 5059 aa5.42□□□□□ -1.54
COL8A1-202ENST00000273342 SPRR5A0A1B0GTR4 108 aa5.4□□□□□ -1.55
COL8A1-202ENST00000273342 LCE3AQ5TA76 89 aa5.38□□□□□ -1.55
COL8A1-202ENST00000273342 BIRC6Q9NR09 4857 aa5.38□□□□□ -1.55
COL8A1-202ENST00000273342 LOC100996750A0A140TA64 210 aa5.36□□□□□ -1.55
COL8A1-202ENST00000273342 KRTAP4-6Q9BYQ5 205 aa5.36□□□□□ -1.55
COL8A1-202ENST00000273342 KRTAP10-10P60014 251 aa5.33□□□□□ -1.56
COL8A1-202ENST00000273342 KRTAP19-1Q8IUB9 90 aa5.32□□□□□ -1.56
COL8A1-202ENST00000273342 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
COL8A1-202ENST00000273342 LCE2CQ5TA81 110 aa5.27□□□□□ -1.57
COL8A1-202ENST00000273342 SPRR2GQ9BYE4 73 aa5.26□□□□□ -1.57
COL8A1-202ENST00000273342 MT1HP80294 61 aa5.2□□□□□ -1.58
COL8A1-202ENST00000273342 MT1FP04733 61 aa5.18□□□□□ -1.58
COL8A1-202ENST00000273342 USH2AO75445 5202 aa5.14□□□□□ -1.59
COL8A1-202ENST00000273342 MT2AP02795 61 aa5.13□□□□□ -1.59
COL8A1-202ENST00000273342 LCE2BO14633 110 aa5.07□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP8-1Q8IUC2 63 aa5.07□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP12-3P60328 96 aa5.07□□□□□ -1.6
COL8A1-202ENST00000273342 PRO2289Q9P1D8 64 aa5.06□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
COL8A1-202ENST00000273342 KMT2DO14686 5537 aa5.04□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP10-12P60413 245 aa5.03□□□□□ -1.6
COL8A1-202ENST00000273342 MT1XP80297 61 aa5.03□□□□□ -1.6
COL8A1-202ENST00000273342 KRTAP10-7P60409 375 aaPredicted RBP5.01□□□□□ -1.61
COL8A1-202ENST00000273342 MT1BP07438 61 aa5□□□□□ -1.61
COL8A1-202ENST00000273342 KRTAP19-8Q3LI54 63 aa4.94□□□□□ -1.62
COL8A1-202ENST00000273342 FSIP2Q5CZC0 6907 aa4.94□□□□□ -1.62
COL8A1-202ENST00000273342 INE1O15225 51 aa4.93□□□□□ -1.62
COL8A1-202ENST00000273342 KRTAP19-5Q3LI72 72 aa4.82□□□□□ -1.64
COL8A1-202ENST00000273342 KRTAP9-3Q9BYQ3 159 aa4.8□□□□□ -1.64
COL8A1-202ENST00000273342 LCE2AQ5TA79 106 aaPredicted RBP4.77□□□□□ -1.65
COL8A1-202ENST00000273342 KRTAP4-8A0A0G2JLE6 195 aa4.75□□□□□ -1.65
COL8A1-202ENST00000273342 KRTAP4-8Q9BYQ9 185 aa4.75□□□□□ -1.65
COL8A1-202ENST00000273342 LCE3CQ5T5A8 94 aa4.74□□□□□ -1.65
COL8A1-202ENST00000273342 KRTAP9-6A8MVA2 160 aa4.69□□□□□ -1.66
COL8A1-202ENST00000273342 KRTAP4-7Q9BYR0 210 aa4.69□□□□□ -1.66
COL8A1-202ENST00000273342 KRTAP5-3Q6L8H2 238 aa4.54□□□□□ -1.68
COL8A1-202ENST00000273342 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
COL8A1-202ENST00000273342 KRTAP19-7Q3SYF9 63 aa4.47□□□□□ -1.69
COL8A1-202ENST00000273342 KRTAP2-3P0C7H8 128 aa4.43□□□□□ -1.7
COL8A1-202ENST00000273342 KRTAP2-4Q9BYR9 128 aa4.43□□□□□ -1.7
COL8A1-202ENST00000273342 KRTAP2-1Q9BYU5 128 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms