RNA–Protein interactions for RNA: ENST00000273064.10

CNOT9-201, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT9, Length 4,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-201ENST00000273064 DNAH2Q9P225 4427 aa7.38□□□□□ -1.23
CNOT9-201ENST00000273064 DYNC1H1Q14204 4646 aaKnown RBP7.34□□□□□ -1.23
CNOT9-201ENST00000273064 KRTAP10-4P60372 401 aaPredicted RBP7.32□□□□□ -1.24
CNOT9-201ENST00000273064 KIAA1109Q2LD37 5005 aa7.3□□□□□ -1.24
CNOT9-201ENST00000273064 FAT3Q8TDW7 4589 aa7.3□□□□□ -1.24
CNOT9-201ENST00000273064 TPRXLQ17RH7 258 aa7.29□□□□□ -1.24
CNOT9-201ENST00000273064 NDUFAF8A1L188 74 aa7.28□□□□□ -1.24
CNOT9-201ENST00000273064 KRTAP4-5Q9BYR2 181 aa7.28□□□□□ -1.24
CNOT9-201ENST00000273064 DNAH3Q8TD57 4116 aa7.28□□□□□ -1.24
CNOT9-201ENST00000273064 VPS13BQ7Z7G8 4022 aa7.27□□□□□ -1.25
CNOT9-201ENST00000273064 RYR1P21817 5038 aa7.25□□□□□ -1.25
CNOT9-201ENST00000273064 HYDINQ4G0P3 5121 aa7.24□□□□□ -1.25
CNOT9-201ENST00000273064 KRTAP13-4Q3LI77 160 aa7.24□□□□□ -1.25
CNOT9-201ENST00000273064 LRP1Q07954 4544 aaKnown RBP7.23□□□□□ -1.25
CNOT9-201ENST00000273064 MT1HL1P0DM35 61 aa7.21□□□□□ -1.25
CNOT9-201ENST00000273064 LUZP6Q538Z0 58 aa7.2□□□□□ -1.26
CNOT9-201ENST00000273064 PKHD1P08F94 4074 aa7.19□□□□□ -1.26
CNOT9-201ENST00000273064 KRTAP12-2P59991 146 aa7.18□□□□□ -1.26
CNOT9-201ENST00000273064 KRTAP10-6P60371 365 aaPredicted RBP7.16□□□□□ -1.26
CNOT9-201ENST00000273064 HECTD4Q9Y4D8 3996 aa7.16□□□□□ -1.26
CNOT9-201ENST00000273064 SACSQ9NZJ4 4579 aa7.16□□□□□ -1.26
CNOT9-201ENST00000273064 DYNC2H1Q8NCM8 4307 aaKnown RBP7.15□□□□□ -1.26
CNOT9-201ENST00000273064 APOBP04114 4563 aaKnown RBP7.09□□□□□ -1.27
CNOT9-201ENST00000273064 PLAC4Q8WY50 150 aa7.09□□□□□ -1.27
CNOT9-201ENST00000273064 RYR3Q15413 4870 aa7.09□□□□□ -1.27
CNOT9-201ENST00000273064 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
CNOT9-201ENST00000273064 KRTAP12-1P59990 96 aa7.02□□□□□ -1.28
CNOT9-201ENST00000273064 KMT2CQ8NEZ4 4911 aaKnown RBP7.01□□□□□ -1.29
CNOT9-201ENST00000273064 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
CNOT9-201ENST00000273064 ALMS1Q8TCU4 4167 aa6.96□□□□□ -1.29
CNOT9-201ENST00000273064 FAT2Q9NYQ8 4349 aa6.95□□□□□ -1.3
CNOT9-201ENST00000273064 KRTAP10-10P60014 251 aa6.93□□□□□ -1.3
CNOT9-201ENST00000273064 KRTAP17-1Q9BYP8 105 aa6.92□□□□□ -1.3
CNOT9-201ENST00000273064 TNP1P09430 55 aa6.91□□□□□ -1.3
CNOT9-201ENST00000273064 LRP2P98164 4655 aa6.9□□□□□ -1.31
CNOT9-201ENST00000273064 LORP23490 312 aaPredicted RBP6.81□□□□□ -1.32
CNOT9-201ENST00000273064 RYR2Q92736 4967 aa6.77□□□□□ -1.33
CNOT9-201ENST00000273064 KRTAP4-1Q9BYQ7 146 aa6.71□□□□□ -1.34
CNOT9-201ENST00000273064 PKD1P98161 4303 aa6.7□□□□□ -1.34
CNOT9-201ENST00000273064 HERC2O95714 4834 aa6.65□□□□□ -1.34
CNOT9-201ENST00000273064 LPAP08519 4548 aa6.63□□□□□ -1.35
CNOT9-201ENST00000273064 EPPK1P58107 5090 aaKnown RBP6.6□□□□□ -1.35
CNOT9-201ENST00000273064 HSPG2P98160 4391 aa6.6□□□□□ -1.35
CNOT9-201ENST00000273064 PP632Q6XCG6 107 aa6.59□□□□□ -1.35
CNOT9-201ENST00000273064 KRTAP15-1Q3LI76 137 aa6.43□□□□□ -1.38
CNOT9-201ENST00000273064 MUC2Q02817 5179 aa6.43□□□□□ -1.38
CNOT9-201ENST00000273064 PCLOQ9Y6V0 5065 aa6.39□□□□□ -1.39
CNOT9-201ENST00000273064 ABCA13Q86UQ4 5058 aa6.37□□□□□ -1.39
CNOT9-201ENST00000273064 PKHD1L1Q86WI1 4243 aa6.35□□□□□ -1.39
CNOT9-201ENST00000273064 RNF213Q63HN8 5207 aa6.3□□□□□ -1.4
CNOT9-201ENST00000273064 PRO2289Q9P1D8 64 aa6.27□□□□□ -1.41
CNOT9-201ENST00000273064 HERC1Q15751 4861 aa6.25□□□□□ -1.41
CNOT9-201ENST00000273064 TNXBP22105 4242 aa6.23□□□□□ -1.41
CNOT9-201ENST00000273064 FAT4Q6V0I7 4981 aa6.2□□□□□ -1.42
CNOT9-201ENST00000273064 LCE3AQ5TA76 89 aa6.15□□□□□ -1.43
CNOT9-201ENST00000273064 FSIP2Q5CZC0 6907 aa6.12□□□□□ -1.43
CNOT9-201ENST00000273064 MT1HP80294 61 aa6.12□□□□□ -1.43
CNOT9-201ENST00000273064 BIRC6Q9NR09 4857 aa6.08□□□□□ -1.44
CNOT9-201ENST00000273064 UBR4Q5T4S7 5183 aa6.06□□□□□ -1.44
CNOT9-201ENST00000273064 MT2AP02795 61 aa6.06□□□□□ -1.44
CNOT9-201ENST00000273064 MT1FP04733 61 aa6.06□□□□□ -1.44
CNOT9-201ENST00000273064 KRTAP10-12P60413 245 aa6.05□□□□□ -1.44
CNOT9-201ENST00000273064 KRTAP12-3P60328 96 aa5.97□□□□□ -1.45
CNOT9-201ENST00000273064 KRTAP19-1Q8IUB9 90 aa5.92□□□□□ -1.46
CNOT9-201ENST00000273064 SPRR2GQ9BYE4 73 aa5.91□□□□□ -1.46
CNOT9-201ENST00000273064 MUC17Q685J3 4493 aa5.88□□□□□ -1.47
CNOT9-201ENST00000273064 LCE2CQ5TA81 110 aa5.85□□□□□ -1.47
CNOT9-201ENST00000273064 CRCT1Q9UGL9 99 aa5.85□□□□□ -1.47
CNOT9-201ENST00000273064 KRTAP19-2Q3LHN2 52 aa5.83□□□□□ -1.48
CNOT9-201ENST00000273064 HMCN2Q8NDA2 5059 aa5.79□□□□□ -1.48
CNOT9-201ENST00000273064 FLGP20930 4061 aaPredicted RBP5.75□□□□□ -1.49
CNOT9-201ENST00000273064 KRTAP9-8Q9BYQ0 159 aa5.72□□□□□ -1.49
CNOT9-201ENST00000273064 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
CNOT9-201ENST00000273064 OBSCNQ5VST9 7968 aa5.69□□□□□ -1.5
CNOT9-201ENST00000273064 KRTAP23-1A1A580 65 aa5.68□□□□□ -1.5
CNOT9-201ENST00000273064 MT1BP07438 61 aa5.62□□□□□ -1.51
CNOT9-201ENST00000273064 USH2AO75445 5202 aa5.6□□□□□ -1.51
CNOT9-201ENST00000273064 MT1XP80297 61 aa5.6□□□□□ -1.51
CNOT9-201ENST00000273064 KRTAP19-5Q3LI72 72 aa5.59□□□□□ -1.51
CNOT9-201ENST00000273064 INE1O15225 51 aa5.58□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP10-5P60370 271 aa5.57□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP4-8A0A0G2JLE6 195 aa5.56□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP4-8Q9BYQ9 185 aa5.56□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP8-1Q8IUC2 63 aa5.54□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP19-8Q3LI54 63 aa5.54□□□□□ -1.52
CNOT9-201ENST00000273064 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
CNOT9-201ENST00000273064 SYNE1Q8NF91 8797 aaKnown RBP5.48□□□□□ -1.53
CNOT9-201ENST00000273064 LCE2BO14633 110 aa5.42□□□□□ -1.54
CNOT9-201ENST00000273064 KMT2DO14686 5537 aa5.41□□□□□ -1.54
CNOT9-201ENST00000273064 DSTQ03001 7570 aaKnown RBP5.39□□□□□ -1.55
CNOT9-201ENST00000273064 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
CNOT9-201ENST00000273064 KRTAP4-7Q9BYR0 210 aa5.32□□□□□ -1.56
CNOT9-201ENST00000273064 FCGBPQ9Y6R7 5405 aaPredicted RBP5.28□□□□□ -1.56
CNOT9-201ENST00000273064 SPRR2FQ96RM1 72 aa5.25□□□□□ -1.57
CNOT9-201ENST00000273064 SPRR5A0A1B0GTR4 108 aa5.2□□□□□ -1.58
CNOT9-201ENST00000273064 MT1GP13640 62 aa5.08□□□□□ -1.6
CNOT9-201ENST00000273064 LCE2AQ5TA79 106 aaPredicted RBP5.02□□□□□ -1.61
CNOT9-201ENST00000273064 SYNE2Q8WXH0 6885 aaKnown RBP4.99□□□□□ -1.61
CNOT9-201ENST00000273064 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
CNOT9-201ENST00000273064 MUC12Q9UKN1 5478 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms