RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 EPPK1P58107 5090 aaKnown RBP8.73□□□□□ -1.01
VPS54-201ENST00000272322 LRP2P98164 4655 aa8.7□□□□□ -1.02
VPS54-201ENST00000272322 A0A1B0GU33 70 aa8.7□□□□□ -1.02
VPS54-201ENST00000272322 H0YAA0 97 aa8.69□□□□□ -1.02
VPS54-201ENST00000272322 KRTAP10-8P60410 259 aa8.69□□□□□ -1.02
VPS54-201ENST00000272322 COX6B2Q6YFQ2 88 aa8.68□□□□□ -1.02
VPS54-201ENST00000272322 CRIPTQ9P021 101 aa8.66□□□□□ -1.02
VPS54-201ENST00000272322 A0A0D9SG42 100 aa8.64□□□□□ -1.03
VPS54-201ENST00000272322 XP32Q5T750 250 aa8.63□□□□□ -1.03
VPS54-201ENST00000272322 ABCA13Q86UQ4 5058 aa8.6□□□□□ -1.03
VPS54-201ENST00000272322 CSAG1Q6PB30 78 aa8.59□□□□□ -1.03
VPS54-201ENST00000272322 H1FX-AS1Q4G0G2 97 aa8.58□□□□□ -1.04
VPS54-201ENST00000272322 RPL37P61927 97 aaKnown RBP8.56□□□□□ -1.04
VPS54-201ENST00000272322 MT1HL1P0DM35 61 aa8.5□□□□□ -1.05
VPS54-201ENST00000272322 KRTAP4-5Q9BYR2 181 aa8.49□□□□□ -1.05
VPS54-201ENST00000272322 KRTAP3-3Q9BYR6 98 aa8.46□□□□□ -1.05
VPS54-201ENST00000272322 S4R3F8 94 aa8.46□□□□□ -1.06
VPS54-201ENST00000272322 P0C880 135 aa8.44□□□□□ -1.06
VPS54-201ENST00000272322 KRTAP13-4Q3LI77 160 aa8.43□□□□□ -1.06
VPS54-201ENST00000272322 KRTAP10-6P60371 365 aaPredicted RBP8.38□□□□□ -1.07
VPS54-201ENST00000272322 MUC2Q02817 5179 aa8.36□□□□□ -1.07
VPS54-201ENST00000272322 K7ERS5 55 aa8.35□□□□□ -1.07
VPS54-201ENST00000272322 LINC01554Q52M75 96 aa8.35□□□□□ -1.07
VPS54-201ENST00000272322 KRTAP3-2Q9BYR7 98 aa8.3□□□□□ -1.08
VPS54-201ENST00000272322 SPINT4Q6UDR6 99 aa8.29□□□□□ -1.08
VPS54-201ENST00000272322 HERC2O95714 4834 aa8.23□□□□□ -1.09
VPS54-201ENST00000272322 J3QL48 77 aa8.2□□□□□ -1.1
VPS54-201ENST00000272322 C10orf95Q9H7T3 257 aa8.17□□□□□ -1.1
VPS54-201ENST00000272322 KRTAP25-1Q3LHN0 102 aa8.16□□□□□ -1.1
VPS54-201ENST00000272322 TPRXLQ17RH7 258 aa8.15□□□□□ -1.1
VPS54-201ENST00000272322 KRTAP12-2P59991 146 aa8.14□□□□□ -1.11
VPS54-201ENST00000272322 ROMO1P60602 79 aa8.11□□□□□ -1.11
VPS54-201ENST00000272322 M0QZ58 72 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 KRTAP4-1Q9BYQ7 146 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 HERC1Q15751 4861 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
VPS54-201ENST00000272322 R4GN34 69 aa7.98□□□□□ -1.13
VPS54-201ENST00000272322 LORP23490 312 aaPredicted RBP7.97□□□□□ -1.13
VPS54-201ENST00000272322 SEC61BP60468 96 aaKnown RBP7.95□□□□□ -1.14
VPS54-201ENST00000272322 PCLOQ9Y6V0 5065 aa7.93□□□□□ -1.14
VPS54-201ENST00000272322 FAT4Q6V0I7 4981 aa7.93□□□□□ -1.14
VPS54-201ENST00000272322 MUC17Q685J3 4493 aa7.9□□□□□ -1.15
VPS54-201ENST00000272322 RNF213Q63HN8 5207 aa7.86□□□□□ -1.15
VPS54-201ENST00000272322 BIRC6Q9NR09 4857 aa7.83□□□□□ -1.16
VPS54-201ENST00000272322 H3BS24 57 aa7.67□□□□□ -1.18
VPS54-201ENST00000272322 CAMK2N1Q7Z7J9 78 aa7.65□□□□□ -1.18
VPS54-201ENST00000272322 UBR4Q5T4S7 5183 aa7.65□□□□□ -1.19
VPS54-201ENST00000272322 KRTAP19-2Q3LHN2 52 aa7.59□□□□□ -1.19
VPS54-201ENST00000272322 HMCN2Q8NDA2 5059 aa7.58□□□□□ -1.2
VPS54-201ENST00000272322 FLGP20930 4061 aaPredicted RBP7.53□□□□□ -1.2
VPS54-201ENST00000272322 M0R2T5 61 aa7.53□□□□□ -1.2
VPS54-201ENST00000272322 NDUFAF8A1L188 74 aa7.47□□□□□ -1.21
VPS54-201ENST00000272322 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
VPS54-201ENST00000272322 LCE2CQ5TA81 110 aa7.26□□□□□ -1.25
VPS54-201ENST00000272322 PLAC4Q8WY50 150 aa7.24□□□□□ -1.25
VPS54-201ENST00000272322 KRTAP10-10P60014 251 aa7.21□□□□□ -1.26
VPS54-201ENST00000272322 TNP1P09430 55 aa7.15□□□□□ -1.27
VPS54-201ENST00000272322 MT1HP80294 61 aa7.14□□□□□ -1.27
VPS54-201ENST00000272322 KRTAP19-1Q8IUB9 90 aa7.09□□□□□ -1.27
VPS54-201ENST00000272322 MT1FP04733 61 aa7.07□□□□□ -1.28
VPS54-201ENST00000272322 USH2AO75445 5202 aa7.05□□□□□ -1.28
VPS54-201ENST00000272322 MT2AP02795 61 aa7.02□□□□□ -1.29
VPS54-201ENST00000272322 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
VPS54-201ENST00000272322 SPRR2GQ9BYE4 73 aa6.96□□□□□ -1.3
VPS54-201ENST00000272322 LUZP6Q538Z0 58 aa6.93□□□□□ -1.3
VPS54-201ENST00000272322 KRTAP9-8Q9BYQ0 159 aa6.92□□□□□ -1.3
VPS54-201ENST00000272322 LCE3AQ5TA76 89 aa6.87□□□□□ -1.31
VPS54-201ENST00000272322 KMT2DO14686 5537 aa6.84□□□□□ -1.31
VPS54-201ENST00000272322 FSIP2Q5CZC0 6907 aa6.83□□□□□ -1.32
VPS54-201ENST00000272322 MT1BP07438 61 aa6.72□□□□□ -1.33
VPS54-201ENST00000272322 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
VPS54-201ENST00000272322 MT1XP80297 61 aa6.66□□□□□ -1.34
VPS54-201ENST00000272322 KRTAP10-7P60409 375 aaPredicted RBP6.62□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP19-8Q3LI54 63 aa6.6□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP9-3Q9BYQ3 159 aa6.6□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP10-12P60413 245 aa6.56□□□□□ -1.36
VPS54-201ENST00000272322 KRTAP23-1A1A580 65 aa6.53□□□□□ -1.36
VPS54-201ENST00000272322 LCE2BO14633 110 aa6.49□□□□□ -1.37
VPS54-201ENST00000272322 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
VPS54-201ENST00000272322 KRTAP8-1Q8IUC2 63 aa6.43□□□□□ -1.38
VPS54-201ENST00000272322 A0A0A0MQY5 61 aa6.41□□□□□ -1.38
VPS54-201ENST00000272322 SPRR5A0A1B0GTR4 108 aa6.41□□□□□ -1.38
VPS54-201ENST00000272322 KRTAP4-8A0A0G2JLE6 195 aa6.4□□□□□ -1.39
VPS54-201ENST00000272322 KRTAP4-8Q9BYQ9 185 aa6.4□□□□□ -1.39
VPS54-201ENST00000272322 PRO2289Q9P1D8 64 aa6.38□□□□□ -1.39
VPS54-201ENST00000272322 KRTAP19-5Q3LI72 72 aa6.3□□□□□ -1.4
VPS54-201ENST00000272322 LCE2AQ5TA79 106 aaPredicted RBP6.23□□□□□ -1.41
VPS54-201ENST00000272322 SSPOA2VEC9 5147 aa6.19□□□□□ -1.42
VPS54-201ENST00000272322 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
VPS54-201ENST00000272322 DSTQ03001 7570 aaKnown RBP6.13□□□□□ -1.43
VPS54-201ENST00000272322 MUC12Q9UKN1 5478 aa6.05□□□□□ -1.44
VPS54-201ENST00000272322 LCE3CQ5T5A8 94 aa6.02□□□□□ -1.45
VPS54-201ENST00000272322 FCGBPQ9Y6R7 5405 aaPredicted RBP5.99□□□□□ -1.45
VPS54-201ENST00000272322 KRTAP9-6A8MVA2 160 aa5.94□□□□□ -1.46
VPS54-201ENST00000272322 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
VPS54-201ENST00000272322 CRCT1Q9UGL9 99 aa5.8□□□□□ -1.48
VPS54-201ENST00000272322 KRTAP4-3Q9BYR4 195 aa5.77□□□□□ -1.49
VPS54-201ENST00000272322 SYNE1Q8NF91 8797 aaKnown RBP5.76□□□□□ -1.49
VPS54-201ENST00000272322 MT1EP04732 61 aa5.74□□□□□ -1.49
VPS54-201ENST00000272322 MT1LQ93083 61 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms