RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 C20orf166-AS1Q96NR2 134 aa3.84□□□□□ -1.79
CSDE1-201ENST00000261443 A0A0D9SG42 100 aa3.83□□□□□ -1.8
CSDE1-201ENST00000261443 KRTAP15-1Q3LI76 137 aa3.82□□□□□ -1.8
CSDE1-201ENST00000261443 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
CSDE1-201ENST00000261443 A0A0A0MQY5 61 aa3.81□□□□□ -1.8
CSDE1-201ENST00000261443 KMT2CQ8NEZ4 4911 aaKnown RBP3.8□□□□□ -1.8
CSDE1-201ENST00000261443 KRTAP10-1P60331 282 aa3.8□□□□□ -1.8
CSDE1-201ENST00000261443 KRTAP13-4Q3LI77 160 aa3.79□□□□□ -1.8
CSDE1-201ENST00000261443 RYR2Q92736 4967 aa3.78□□□□□ -1.8
CSDE1-201ENST00000261443 RPS29P62273 56 aaKnown RBP3.78□□□□□ -1.8
CSDE1-201ENST00000261443 KRTAP10-6P60371 365 aaPredicted RBP3.78□□□□□ -1.81
CSDE1-201ENST00000261443 MYCBP2O75592 4640 aa3.75□□□□□ -1.81
CSDE1-201ENST00000261443 TNXBP22105 4242 aa3.74□□□□□ -1.81
CSDE1-201ENST00000261443 J3QL48 77 aa3.74□□□□□ -1.81
CSDE1-201ENST00000261443 S4R3F8 94 aa3.73□□□□□ -1.81
CSDE1-201ENST00000261443 LRP1Q07954 4544 aaKnown RBP3.71□□□□□ -1.82
CSDE1-201ENST00000261443 FAT3Q8TDW7 4589 aa3.71□□□□□ -1.82
CSDE1-201ENST00000261443 RYR3Q15413 4870 aa3.7□□□□□ -1.82
CSDE1-201ENST00000261443 HSPG2P98160 4391 aa3.7□□□□□ -1.82
CSDE1-201ENST00000261443 KRTAP12-2P59991 146 aa3.7□□□□□ -1.82
CSDE1-201ENST00000261443 SMR3BP02814 79 aaPredicted RBP3.69□□□□□ -1.82
CSDE1-201ENST00000261443 KRTAP12-1P59990 96 aa3.65□□□□□ -1.83
CSDE1-201ENST00000261443 KRTAP10-4P60372 401 aaPredicted RBP3.65□□□□□ -1.83
CSDE1-201ENST00000261443 XP32Q5T750 250 aa3.65□□□□□ -1.83
CSDE1-201ENST00000261443 LPAP08519 4548 aa3.62□□□□□ -1.83
CSDE1-201ENST00000261443 LOC100996750A0A140TA64 210 aa3.6□□□□□ -1.83
CSDE1-201ENST00000261443 KRTAP4-6Q9BYQ5 205 aa3.6□□□□□ -1.83
CSDE1-201ENST00000261443 LUZP6Q538Z0 58 aa3.6□□□□□ -1.83
CSDE1-201ENST00000261443 A0A1B0GVY2 172 aa3.59□□□□□ -1.83
CSDE1-201ENST00000261443 KRTAP10-8P60410 259 aa3.59□□□□□ -1.83
CSDE1-201ENST00000261443 BIRC6Q9NR09 4857 aa3.59□□□□□ -1.83
CSDE1-201ENST00000261443 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
CSDE1-201ENST00000261443 KRTAP17-1Q9BYP8 105 aa3.58□□□□□ -1.84
CSDE1-201ENST00000261443 RYR1P21817 5038 aa3.58□□□□□ -1.84
CSDE1-201ENST00000261443 M0QZ58 72 aa3.55□□□□□ -1.84
CSDE1-201ENST00000261443 PLAC4Q8WY50 150 aa3.55□□□□□ -1.84
CSDE1-201ENST00000261443 EPPK1P58107 5090 aaKnown RBP3.54□□□□□ -1.84
CSDE1-201ENST00000261443 KIAA1109Q2LD37 5005 aa3.53□□□□□ -1.84
CSDE1-201ENST00000261443 ABCA13Q86UQ4 5058 aa3.5□□□□□ -1.85
CSDE1-201ENST00000261443 LRP2P98164 4655 aa3.48□□□□□ -1.85
CSDE1-201ENST00000261443 HERC2O95714 4834 aa3.47□□□□□ -1.85
CSDE1-201ENST00000261443 R4GN34 69 aa3.44□□□□□ -1.86
CSDE1-201ENST00000261443 MUC2Q02817 5179 aa3.4□□□□□ -1.86
CSDE1-201ENST00000261443 MUC17Q685J3 4493 aa3.39□□□□□ -1.87
CSDE1-201ENST00000261443 PP632Q6XCG6 107 aa3.37□□□□□ -1.87
CSDE1-201ENST00000261443 MT1HL1P0DM35 61 aa3.36□□□□□ -1.87
CSDE1-201ENST00000261443 KRTAP19-4Q3LI73 84 aa3.32□□□□□ -1.88
CSDE1-201ENST00000261443 Q5VSD8 79 aa3.32□□□□□ -1.88
CSDE1-201ENST00000261443 LORP23490 312 aaPredicted RBP3.32□□□□□ -1.88
CSDE1-201ENST00000261443 LCE2BO14633 110 aa3.32□□□□□ -1.88
CSDE1-201ENST00000261443 PCLOQ9Y6V0 5065 aa3.31□□□□□ -1.88
CSDE1-201ENST00000261443 CAMK2N1Q7Z7J9 78 aa3.31□□□□□ -1.88
CSDE1-201ENST00000261443 KRTAP4-5Q9BYR2 181 aa3.27□□□□□ -1.89
CSDE1-201ENST00000261443 SEC61BP60468 96 aaKnown RBP3.26□□□□□ -1.89
CSDE1-201ENST00000261443 KRTAP4-8Q9BYQ9 185 aa3.24□□□□□ -1.89
CSDE1-201ENST00000261443 SPRR5A0A1B0GTR4 108 aa3.22□□□□□ -1.89
CSDE1-201ENST00000261443 FLGP20930 4061 aaPredicted RBP3.21□□□□□ -1.9
CSDE1-201ENST00000261443 TNP1P09430 55 aa3.19□□□□□ -1.9
CSDE1-201ENST00000261443 FAT4Q6V0I7 4981 aa3.19□□□□□ -1.9
CSDE1-201ENST00000261443 HERC1Q15751 4861 aa3.18□□□□□ -1.9
CSDE1-201ENST00000261443 KRTAP4-1Q9BYQ7 146 aa3.18□□□□□ -1.9
CSDE1-201ENST00000261443 KRTAP19-2Q3LHN2 52 aa3.17□□□□□ -1.9
CSDE1-201ENST00000261443 RNF213Q63HN8 5207 aa3.17□□□□□ -1.9
CSDE1-201ENST00000261443 KRTAP23-1A1A580 65 aa3.17□□□□□ -1.9
CSDE1-201ENST00000261443 PRO2289Q9P1D8 64 aa3.15□□□□□ -1.9
CSDE1-201ENST00000261443 HMCN2Q8NDA2 5059 aa3.14□□□□□ -1.91
CSDE1-201ENST00000261443 INE1O15225 51 aa3.07□□□□□ -1.92
CSDE1-201ENST00000261443 KRTAP4-12Q9BQ66 201 aa3.06□□□□□ -1.92
CSDE1-201ENST00000261443 UBR4Q5T4S7 5183 aa3.03□□□□□ -1.92
CSDE1-201ENST00000261443 LCE3BQ5TA77 95 aa3□□□□□ -1.93
CSDE1-201ENST00000261443 KRTAP4-8A0A0G2JLE6 195 aa2.99□□□□□ -1.93
CSDE1-201ENST00000261443 LCE3AQ5TA76 89 aa2.99□□□□□ -1.93
CSDE1-201ENST00000261443 KRTAP9-2Q9BYQ4 174 aa2.99□□□□□ -1.93
CSDE1-201ENST00000261443 LCE2CQ5TA81 110 aa2.97□□□□□ -1.93
CSDE1-201ENST00000261443 KRTAP4-7Q9BYR0 210 aa2.95□□□□□ -1.94
CSDE1-201ENST00000261443 KRTAP9-6A0A140TA67 174 aa2.95□□□□□ -1.94
CSDE1-201ENST00000261443 LCE1DQ5T752 114 aa2.95□□□□□ -1.94
CSDE1-201ENST00000261443 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.91□□□□□ -1.94
CSDE1-201ENST00000261443 SPRR2GQ9BYE4 73 aa2.9□□□□□ -1.95
CSDE1-201ENST00000261443 KRTAP4-9Q9BYQ8 210 aa2.9□□□□□ -1.95
CSDE1-201ENST00000261443 KRTAP8-1Q8IUC2 63 aa2.89□□□□□ -1.95
CSDE1-201ENST00000261443 USH2AO75445 5202 aa2.88□□□□□ -1.95
CSDE1-201ENST00000261443 KRTAP19-1Q8IUB9 90 aa2.87□□□□□ -1.95
CSDE1-201ENST00000261443 KMT2DO14686 5537 aa2.84□□□□□ -1.95
CSDE1-201ENST00000261443 KRTAP12-3P60328 96 aa2.83□□□□□ -1.96
CSDE1-201ENST00000261443 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
CSDE1-201ENST00000261443 KRTAP9-4Q9BYQ2 154 aa2.83□□□□□ -1.96
CSDE1-201ENST00000261443 KRTAP10-12P60413 245 aa2.81□□□□□ -1.96
CSDE1-201ENST00000261443 M0R2T5 61 aa2.81□□□□□ -1.96
CSDE1-201ENST00000261443 MT1HP80294 61 aa2.8□□□□□ -1.96
CSDE1-201ENST00000261443 FSIP2Q5CZC0 6907 aa2.78□□□□□ -1.96
CSDE1-201ENST00000261443 MT1FP04733 61 aa2.77□□□□□ -1.97
CSDE1-201ENST00000261443 KRTAP9-8Q9BYQ0 159 aa2.77□□□□□ -1.97
CSDE1-201ENST00000261443 KRTAP10-10P60014 251 aa2.76□□□□□ -1.97
CSDE1-201ENST00000261443 MT2AP02795 61 aa2.75□□□□□ -1.97
CSDE1-201ENST00000261443 KRTAP10-5P60370 271 aa2.74□□□□□ -1.97
CSDE1-201ENST00000261443 MT1XP80297 61 aa2.73□□□□□ -1.97
CSDE1-201ENST00000261443 KRTAP19-8Q3LI54 63 aa2.71□□□□□ -1.98
CSDE1-201ENST00000261443 KRTAP10-7P60409 375 aaPredicted RBP2.69□□□□□ -1.98
CSDE1-201ENST00000261443 MT1BP07438 61 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms