RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 TGP01266 2768 aa0.95□□□□□ -2.26
CCDC54-201ENST00000261058 STAB1Q9NY15 2570 aa0.94□□□□□ -2.26
CCDC54-201ENST00000261058 DMDP11532 3685 aa0.94□□□□□ -2.26
CCDC54-201ENST00000261058 PRM1P04553 51 aa0.94□□□□□ -2.26
CCDC54-201ENST00000261058 MUC5BQ9HC84 5762 aaPredicted RBP0.94□□□□□ -2.26
CCDC54-201ENST00000261058 CELSR3Q9NYQ7 3312 aa0.93□□□□□ -2.26
CCDC54-201ENST00000261058 ZANQ9Y493 2812 aa0.93□□□□□ -2.26
CCDC54-201ENST00000261058 DMXL2Q8TDJ6 3036 aa0.93□□□□□ -2.26
CCDC54-201ENST00000261058 NOTCH1P46531 2555 aa0.93□□□□□ -2.26
CCDC54-201ENST00000261058 CENPEQ02224 2701 aa0.93□□□□□ -2.26
CCDC54-201ENST00000261058 USP9XQ93008 2570 aaPredicted RBP0.92□□□□□ -2.26
CCDC54-201ENST00000261058 PKD1L1Q8TDX9 2849 aa0.92□□□□□ -2.26
CCDC54-201ENST00000261058 TACC2O95359 2948 aa0.92□□□□□ -2.26
CCDC54-201ENST00000261058 SRCAPQ6ZRS2 3230 aa0.92□□□□□ -2.26
CCDC54-201ENST00000261058 ZNF469Q96JG9 3925 aaPredicted RBP0.92□□□□□ -2.26
CCDC54-201ENST00000261058 PRKDCP78527 4128 aaKnown RBP0.92□□□□□ -2.26
CCDC54-201ENST00000261058 VPS13AQ96RL7 3174 aa0.92□□□□□ -2.26
CCDC54-201ENST00000261058 DNAH3Q8TD57 4116 aa0.92□□□□□ -2.26
CCDC54-201ENST00000261058 SMG1Q96Q15 3661 aaKnown RBP0.91□□□□□ -2.26
CCDC54-201ENST00000261058 NBEAL2Q6ZNJ1 2754 aa0.91□□□□□ -2.26
CCDC54-201ENST00000261058 ITPR2Q14571 2701 aa0.91□□□□□ -2.26
CCDC54-201ENST00000261058 ACACBO00763 2458 aa0.91□□□□□ -2.26
CCDC54-201ENST00000261058 TNXBP22105 4242 aa0.91□□□□□ -2.26
CCDC54-201ENST00000261058 DNAH10Q8IVF4 4471 aa0.9□□□□□ -2.26
CCDC54-201ENST00000261058 HIVEP1P15822 2718 aa0.9□□□□□ -2.26
CCDC54-201ENST00000261058 SMR3BP02814 79 aaPredicted RBP0.9□□□□□ -2.26
CCDC54-201ENST00000261058 LAMA5O15230 3695 aa0.9□□□□□ -2.26
CCDC54-201ENST00000261058 KALRNO60229 2985 aa0.9□□□□□ -2.27
CCDC54-201ENST00000261058 MXRA5Q9NR99 2828 aa0.9□□□□□ -2.27
CCDC54-201ENST00000261058 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 ANK3Q12955 4377 aaKnown RBP0.89□□□□□ -2.27
CCDC54-201ENST00000261058 CSMD1Q96PZ7 3565 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 FAT2Q9NYQ8 4349 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 CFAP47Q6ZTR5 3102 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 TEX15Q9BXT5 2789 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 FREM2Q5SZK8 3169 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 WDFY4Q6ZS81 3184 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 ZFYVE26Q68DK2 2539 aa0.89□□□□□ -2.27
CCDC54-201ENST00000261058 DNAH2Q9P225 4427 aa0.88□□□□□ -2.27
CCDC54-201ENST00000261058 ANKRD11Q6UB99 2663 aaPredicted RBP0.88□□□□□ -2.27
CCDC54-201ENST00000261058 TEP1Q99973 2627 aaKnown RBP0.88□□□□□ -2.27
CCDC54-201ENST00000261058 DCHS1Q96JQ0 3298 aa0.88□□□□□ -2.27
CCDC54-201ENST00000261058 DOPEY1Q5JWR5 2465 aa0.88□□□□□ -2.27
CCDC54-201ENST00000261058 PKHD1L1Q86WI1 4243 aa0.88□□□□□ -2.27
CCDC54-201ENST00000261058 KRTAP19-3Q7Z4W3 81 aa0.88□□□□□ -2.27
CCDC54-201ENST00000261058 SPTBN5Q9NRC6 3674 aaKnown RBP0.88□□□□□ -2.27
CCDC54-201ENST00000261058 FLNAP21333 2647 aaKnown RBP0.87□□□□□ -2.27
CCDC54-201ENST00000261058 DNAH7Q8WXX0 4024 aa0.87□□□□□ -2.27
CCDC54-201ENST00000261058 MYO18BQ8IUG5 2567 aa0.87□□□□□ -2.27
CCDC54-201ENST00000261058 TLN1Q9Y490 2541 aaKnown RBP0.87□□□□□ -2.27
CCDC54-201ENST00000261058 UNC79Q9P2D8 2635 aa0.87□□□□□ -2.27
CCDC54-201ENST00000261058 CUBNO60494 3623 aa0.87□□□□□ -2.27
CCDC54-201ENST00000261058 TLN2Q9Y4G6 2542 aa0.87□□□□□ -2.27
CCDC54-201ENST00000261058 SPTAN1Q13813 2472 aaKnown RBP0.87□□□□□ -2.27
CCDC54-201ENST00000261058 SVEP1Q4LDE5 3571 aa0.86□□□□□ -2.27
CCDC54-201ENST00000261058 NBEAL1Q6ZS30 2694 aa0.86□□□□□ -2.27
CCDC54-201ENST00000261058 TENM3Q9P273 2699 aa0.86□□□□□ -2.27
CCDC54-201ENST00000261058 FLGP20930 4061 aaPredicted RBP0.86□□□□□ -2.27
CCDC54-201ENST00000261058 GOLGB1Q14789 3259 aaKnown RBP0.85□□□□□ -2.27
CCDC54-201ENST00000261058 SPEGQ15772 3267 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 MT1AP04731 61 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 LAMA1P25391 3075 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 HRNRQ86YZ3 2850 aaPredicted RBP0.85□□□□□ -2.27
CCDC54-201ENST00000261058 AHNAKQ09666 5890 aaKnown RBP0.85□□□□□ -2.27
CCDC54-201ENST00000261058 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 FLNBO75369 2602 aaKnown RBP0.85□□□□□ -2.27
CCDC54-201ENST00000261058 LAMA3Q16787 3333 aa0.85□□□□□ -2.27
CCDC54-201ENST00000261058 STAB2Q8WWQ8 2551 aa0.84□□□□□ -2.27
CCDC54-201ENST00000261058 DNAH1Q9P2D7 4330 aa0.84□□□□□ -2.27
CCDC54-201ENST00000261058 UTRNP46939 3433 aa0.84□□□□□ -2.28
CCDC54-201ENST00000261058 EP400Q96L91 3159 aa0.84□□□□□ -2.28
CCDC54-201ENST00000261058 HUWE1Q7Z6Z7 4374 aaKnown RBP0.84□□□□□ -2.28
CCDC54-201ENST00000261058 HSPG2P98160 4391 aa0.83□□□□□ -2.28
CCDC54-201ENST00000261058 CEP295Q9C0D2 2601 aa0.83□□□□□ -2.28
CCDC54-201ENST00000261058 PKD1P98161 4303 aa0.83□□□□□ -2.28
CCDC54-201ENST00000261058 XIRP2A4UGR9 3374 aa0.83□□□□□ -2.28
CCDC54-201ENST00000261058 FAT3Q8TDW7 4589 aa0.83□□□□□ -2.28
CCDC54-201ENST00000261058 DNAH9Q9NYC9 4486 aa0.82□□□□□ -2.28
CCDC54-201ENST00000261058 CMYA5Q8N3K9 4069 aa0.82□□□□□ -2.28
CCDC54-201ENST00000261058 USP34Q70CQ2 3546 aa0.82□□□□□ -2.28
CCDC54-201ENST00000261058 FASNP49327 2511 aaKnown RBP0.82□□□□□ -2.28
CCDC54-201ENST00000261058 MUC3AQ02505 3323 aa0.81□□□□□ -2.28
CCDC54-201ENST00000261058 APOBP04114 4563 aaKnown RBP0.81□□□□□ -2.28
CCDC54-201ENST00000261058 CSMD2Q7Z408 3487 aa0.8□□□□□ -2.28
CCDC54-201ENST00000261058 HECTD4Q9Y4D8 3996 aa0.8□□□□□ -2.28
CCDC54-201ENST00000261058 DNAH6Q9C0G6 4158 aa0.8□□□□□ -2.28
CCDC54-201ENST00000261058 ADGRG4Q8IZF6 3080 aa0.8□□□□□ -2.28
CCDC54-201ENST00000261058 MYO9AB2RTY4 2548 aa0.8□□□□□ -2.28
CCDC54-201ENST00000261058 PLECQ15149 4684 aaKnown RBP0.79□□□□□ -2.28
CCDC54-201ENST00000261058 GPR98Q8WXG9 6306 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 TRRAPQ9Y4A5 3859 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 LOC400499M0QZD8 3231 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 SPRR2DP22532 72 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 SPRR2BP35325 72 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 MGAM2Q2M2H8 2515 aa0.79□□□□□ -2.28
CCDC54-201ENST00000261058 DNAH17Q9UFH2 4485 aa0.78□□□□□ -2.28
CCDC54-201ENST00000261058 LAMA2P24043 3122 aaKnown RBP0.78□□□□□ -2.28
CCDC54-201ENST00000261058 ASPMQ8IZT6 3477 aa0.78□□□□□ -2.28
CCDC54-201ENST00000261058 LRP1Q07954 4544 aaKnown RBP0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms