RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 KRTAP10-2P60368 255 aa10.86□□□□□ -0.67
RARA-201ENST00000254066 KRTAP17-1Q9BYP8 105 aa10.84□□□□□ -0.67
RARA-201ENST00000254066 RYR1P21817 5038 aa10.78□□□□□ -0.68
RARA-201ENST00000254066 LRP1BQ9NZR2 4599 aa10.77□□□□□ -0.68
RARA-201ENST00000254066 KRTAP10-1P60331 282 aa10.76□□□□□ -0.69
RARA-201ENST00000254066 TPRXLQ17RH7 258 aa10.76□□□□□ -0.69
RARA-201ENST00000254066 FLG2Q5D862 2391 aaPredicted RBP10.75□□□□□ -0.69
RARA-201ENST00000254066 HSPG2P98160 4391 aa10.74□□□□□ -0.69
RARA-201ENST00000254066 KRTAP4-5Q9BYR2 181 aa10.69□□□□□ -0.7
RARA-201ENST00000254066 PCLOQ9Y6V0 5065 aa10.68□□□□□ -0.7
RARA-201ENST00000254066 KRTAP10-6P60371 365 aaPredicted RBP10.68□□□□□ -0.7
RARA-201ENST00000254066 APOBP04114 4563 aaKnown RBP10.68□□□□□ -0.7
RARA-201ENST00000254066 C9orf92A6NGG3 77 aa10.68□□□□□ -0.7
RARA-201ENST00000254066 DNAH5Q8TE73 4624 aa10.68□□□□□ -0.7
RARA-201ENST00000254066 KRTAP13-4Q3LI77 160 aa10.59□□□□□ -0.71
RARA-201ENST00000254066 ABCA13Q86UQ4 5058 aa10.57□□□□□ -0.72
RARA-201ENST00000254066 Q5VSD8 79 aa10.55□□□□□ -0.72
RARA-201ENST00000254066 KRTAP3-2Q9BYR7 98 aa10.54□□□□□ -0.72
RARA-201ENST00000254066 A0A0D9SG42 100 aa10.54□□□□□ -0.72
RARA-201ENST00000254066 KRTAP3-3Q9BYR6 98 aa10.53□□□□□ -0.72
RARA-201ENST00000254066 C10orf95Q9H7T3 257 aa10.51□□□□□ -0.73
RARA-201ENST00000254066 SMR3BP02814 79 aaPredicted RBP10.48□□□□□ -0.73
RARA-201ENST00000254066 S4R3F8 94 aa10.47□□□□□ -0.73
RARA-201ENST00000254066 VPS13BQ7Z7G8 4022 aa10.46□□□□□ -0.74
RARA-201ENST00000254066 FAT1Q14517 4588 aa10.41□□□□□ -0.74
RARA-201ENST00000254066 KRTAP12-2P59991 146 aa10.34□□□□□ -0.75
RARA-201ENST00000254066 XP32Q5T750 250 aa10.33□□□□□ -0.76
RARA-201ENST00000254066 J3QL48 77 aa10.27□□□□□ -0.76
RARA-201ENST00000254066 KRTAP12-1P59990 96 aa10.27□□□□□ -0.76
RARA-201ENST00000254066 DMBT1Q9UGM3 2413 aaPredicted RBP10.26□□□□□ -0.77
RARA-201ENST00000254066 KRTAP10-4P60372 401 aaPredicted RBP10.26□□□□□ -0.77
RARA-201ENST00000254066 CAMK2N1Q7Z7J9 78 aa10.21□□□□□ -0.77
RARA-201ENST00000254066 PKHD1L1Q86WI1 4243 aa10.21□□□□□ -0.78
RARA-201ENST00000254066 MYCBP2O75592 4640 aa10.19□□□□□ -0.78
RARA-201ENST00000254066 M0QZ58 72 aa10.15□□□□□ -0.78
RARA-201ENST00000254066 HERC1Q15751 4861 aa10.15□□□□□ -0.79
RARA-201ENST00000254066 KRTAP10-8P60410 259 aa10.09□□□□□ -0.79
RARA-201ENST00000254066 FAT3Q8TDW7 4589 aa10.02□□□□□ -0.8
RARA-201ENST00000254066 LRP1Q07954 4544 aaKnown RBP10□□□□□ -0.81
RARA-201ENST00000254066 MT1HL1P0DM35 61 aa9.96□□□□□ -0.82
RARA-201ENST00000254066 PLAC4Q8WY50 150 aa9.91□□□□□ -0.82
RARA-201ENST00000254066 HMCN2Q8NDA2 5059 aa9.81□□□□□ -0.84
RARA-201ENST00000254066 TNXBP22105 4242 aa9.77□□□□□ -0.85
RARA-201ENST00000254066 PRO2289Q9P1D8 64 aa9.67□□□□□ -0.86
RARA-201ENST00000254066 PP632Q6XCG6 107 aa9.65□□□□□ -0.86
RARA-201ENST00000254066 R4GN34 69 aa9.64□□□□□ -0.87
RARA-201ENST00000254066 UBR4Q5T4S7 5183 aa9.54□□□□□ -0.88
RARA-201ENST00000254066 LRP2P98164 4655 aa9.49□□□□□ -0.89
RARA-201ENST00000254066 LPAP08519 4548 aa9.29□□□□□ -0.92
RARA-201ENST00000254066 LORP23490 312 aaPredicted RBP9.27□□□□□ -0.93
RARA-201ENST00000254066 RNF213Q63HN8 5207 aa9.26□□□□□ -0.93
RARA-201ENST00000254066 KRTAP23-1A1A580 65 aa9.24□□□□□ -0.93
RARA-201ENST00000254066 SPRR5A0A1B0GTR4 108 aa9.22□□□□□ -0.93
RARA-201ENST00000254066 INE1O15225 51 aa9.21□□□□□ -0.94
RARA-201ENST00000254066 TNP1P09430 55 aa9.03□□□□□ -0.96
RARA-201ENST00000254066 MUC17Q685J3 4493 aa9.01□□□□□ -0.97
RARA-201ENST00000254066 MUC2Q02817 5179 aa8.95□□□□□ -0.98
RARA-201ENST00000254066 LCE2AQ5TA79 106 aaPredicted RBP8.88□□□□□ -0.99
RARA-201ENST00000254066 FAT4Q6V0I7 4981 aa8.8□□□□□ -1
RARA-201ENST00000254066 KRTAP19-2Q3LHN2 52 aa8.79□□□□□ -1
RARA-201ENST00000254066 KRTAP4-1Q9BYQ7 146 aa8.74□□□□□ -1.01
RARA-201ENST00000254066 KRTAP9-2Q9BYQ4 174 aa8.68□□□□□ -1.02
RARA-201ENST00000254066 LCE2CQ5TA81 110 aa8.55□□□□□ -1.04
RARA-201ENST00000254066 LCE2DQ5TA82 110 aaPredicted RBP8.48□□□□□ -1.05
RARA-201ENST00000254066 MT1HP80294 61 aa8.47□□□□□ -1.05
RARA-201ENST00000254066 KRTAP9-6A0A140TA67 174 aa8.41□□□□□ -1.06
RARA-201ENST00000254066 FLGP20930 4061 aaPredicted RBP8.39□□□□□ -1.07
RARA-201ENST00000254066 LCE3AQ5TA76 89 aa8.38□□□□□ -1.07
RARA-201ENST00000254066 SPRR2GQ9BYE4 73 aa8.36□□□□□ -1.07
RARA-201ENST00000254066 M0R2T5 61 aa8.34□□□□□ -1.07
RARA-201ENST00000254066 KRTAP8-1Q8IUC2 63 aa8.29□□□□□ -1.08
RARA-201ENST00000254066 CRCT1Q9UGL9 99 aa8.21□□□□□ -1.09
RARA-201ENST00000254066 KRTAP19-1Q8IUB9 90 aa8.2□□□□□ -1.1
RARA-201ENST00000254066 KRTAP9-8Q9BYQ0 159 aa8.01□□□□□ -1.13
RARA-201ENST00000254066 FSIP2Q5CZC0 6907 aa8□□□□□ -1.13
RARA-201ENST00000254066 KRTAP12-3P60328 96 aa7.99□□□□□ -1.13
RARA-201ENST00000254066 KRTAP10-12P60413 245 aa7.98□□□□□ -1.13
RARA-201ENST00000254066 MT2AP02795 61 aa7.89□□□□□ -1.15
RARA-201ENST00000254066 KRTAP19-8Q3LI54 63 aa7.89□□□□□ -1.15
RARA-201ENST00000254066 KRTAP10-5P60370 271 aa7.81□□□□□ -1.16
RARA-201ENST00000254066 MT1FP04733 61 aa7.8□□□□□ -1.16
RARA-201ENST00000254066 KRTAP10-10P60014 251 aa7.8□□□□□ -1.16
RARA-201ENST00000254066 MT1XP80297 61 aa7.77□□□□□ -1.17
RARA-201ENST00000254066 KRTAP9-3Q9BYQ3 159 aa7.76□□□□□ -1.17
RARA-201ENST00000254066 LCE2BO14633 110 aa7.69□□□□□ -1.18
RARA-201ENST00000254066 USH2AO75445 5202 aa7.69□□□□□ -1.18
RARA-201ENST00000254066 MT1BP07438 61 aa7.68□□□□□ -1.18
RARA-201ENST00000254066 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.63□□□□□ -1.19
RARA-201ENST00000254066 SSPOA2VEC9 5147 aa7.61□□□□□ -1.19
RARA-201ENST00000254066 LCE3CQ5T5A8 94 aa7.59□□□□□ -1.19
RARA-201ENST00000254066 KRTAP9-7A8MTY7 169 aa7.56□□□□□ -1.2
RARA-201ENST00000254066 KRTAP10-7P60409 375 aaPredicted RBP7.56□□□□□ -1.2
RARA-201ENST00000254066 KRTAP19-6Q3LI70 58 aa7.51□□□□□ -1.21
RARA-201ENST00000254066 FCGBPQ9Y6R7 5405 aaPredicted RBP7.48□□□□□ -1.21
RARA-201ENST00000254066 KRTAP2-3P0C7H8 128 aa7.4□□□□□ -1.22
RARA-201ENST00000254066 KRTAP2-4Q9BYR9 128 aa7.4□□□□□ -1.22
RARA-201ENST00000254066 KRTAP2-1Q9BYU5 128 aa7.4□□□□□ -1.22
RARA-201ENST00000254066 KRTAP19-5Q3LI72 72 aa7.38□□□□□ -1.23
RARA-201ENST00000254066 KRTAP9-6A8MVA2 160 aa7.27□□□□□ -1.25
RARA-201ENST00000254066 KRTAP19-4Q3LI73 84 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms