RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SPRR2GQ9BYE4 73 aa10.34□□□□□ -0.75
LSM4-201ENST00000252816 KLKP1Q107X0 134 aa10.33□□□□□ -0.76
LSM4-201ENST00000252816 MT1BP07438 61 aa10.29□□□□□ -0.76
LSM4-201ENST00000252816 MP68P56378 58 aa10.29□□□□□ -0.76
LSM4-201ENST00000252816 KRTAP19-8Q3LI54 63 aa10.27□□□□□ -0.77
LSM4-201ENST00000252816 A8MUN3 132 aa10.25□□□□□ -0.77
LSM4-201ENST00000252816 NDUFC1O43677 76 aa10.25□□□□□ -0.77
LSM4-201ENST00000252816 MACF1Q9UPN3 7388 aaKnown RBP10.24□□□□□ -0.77
LSM4-201ENST00000252816 Q5VV11 94 aa10.23□□□□□ -0.77
LSM4-201ENST00000252816 IMUPQ9GZP8 106 aa10.21□□□□□ -0.77
LSM4-201ENST00000252816 SCGB1A1P11684 91 aa10.16□□□□□ -0.78
LSM4-201ENST00000252816 H0YAA0 97 aa10.15□□□□□ -0.78
LSM4-201ENST00000252816 H3BPC8 53 aa10.15□□□□□ -0.78
LSM4-201ENST00000252816 CRIPTQ9P021 101 aa10.15□□□□□ -0.78
LSM4-201ENST00000252816 SYNE2Q8WXH0 6885 aaKnown RBP10.09□□□□□ -0.79
LSM4-201ENST00000252816 A6NN06 94 aa10.09□□□□□ -0.79
LSM4-201ENST00000252816 MT-ATP8P03928 68 aa10.06□□□□□ -0.8
LSM4-201ENST00000252816 ADM2Q7Z4H4 148 aa10.06□□□□□ -0.8
LSM4-201ENST00000252816 DMAC1Q96GE9 116 aa10.03□□□□□ -0.8
LSM4-201ENST00000252816 KRTAP10-5P60370 271 aa10.01□□□□□ -0.81
LSM4-201ENST00000252816 K7ERU9 68 aa10□□□□□ -0.81
LSM4-201ENST00000252816 KRTAP6-3Q3LI67 103 aa9.97□□□□□ -0.81
LSM4-201ENST00000252816 TRAV7A0A075B6U4 112 aa9.91□□□□□ -0.82
LSM4-201ENST00000252816 SMIM20Q8N5G0 67 aa9.88□□□□□ -0.83
LSM4-201ENST00000252816 P0C880 135 aa9.87□□□□□ -0.83
LSM4-201ENST00000252816 KRTAP3-2Q9BYR7 98 aa9.82□□□□□ -0.84
LSM4-201ENST00000252816 C20orf197Q8N268 126 aa9.78□□□□□ -0.84
LSM4-201ENST00000252816 ACYP2P14621 99 aa9.77□□□□□ -0.85
LSM4-201ENST00000252816 R4GN34 69 aa9.77□□□□□ -0.85
LSM4-201ENST00000252816 SNURFQ9Y675 71 aa9.73□□□□□ -0.85
LSM4-201ENST00000252816 M0QZ58 72 aa9.71□□□□□ -0.86
LSM4-201ENST00000252816 MT1XP80297 61 aa9.67□□□□□ -0.86
LSM4-201ENST00000252816 PLAC4Q8WY50 150 aa9.67□□□□□ -0.86
LSM4-201ENST00000252816 SPTSSBQ8NFR3 76 aa9.61□□□□□ -0.87
LSM4-201ENST00000252816 PRO2289Q9P1D8 64 aa9.61□□□□□ -0.87
LSM4-201ENST00000252816 SERP2Q8N6R1 65 aa9.6□□□□□ -0.87
LSM4-201ENST00000252816 CHKB-CPT1BH3BT56 60 aa9.58□□□□□ -0.88
LSM4-201ENST00000252816 LINC01554Q52M75 96 aa9.57□□□□□ -0.88
LSM4-201ENST00000252816 KRTAP5-9P26371 169 aa9.56□□□□□ -0.88
LSM4-201ENST00000252816 SPANXA2-OT1Q8N9U9 137 aa9.55□□□□□ -0.88
LSM4-201ENST00000252816 MUC12Q9UKN1 5478 aa9.53□□□□□ -0.88
LSM4-201ENST00000252816 NEBP20929 6669 aa9.48□□□□□ -0.89
LSM4-201ENST00000252816 KMT2DO14686 5537 aa9.43□□□□□ -0.9
LSM4-201ENST00000252816 KRTAP12-2P59991 146 aa9.38□□□□□ -0.91
LSM4-201ENST00000252816 COX7CP15954 63 aa9.32□□□□□ -0.92
LSM4-201ENST00000252816 COA5Q86WW8 74 aa9.31□□□□□ -0.92
LSM4-201ENST00000252816 MDN1Q9NU22 5596 aa9.3□□□□□ -0.92
LSM4-201ENST00000252816 SPRR2FQ96RM1 72 aa9.29□□□□□ -0.92
LSM4-201ENST00000252816 KRTAP13-4Q3LI77 160 aa9.27□□□□□ -0.93
LSM4-201ENST00000252816 KRTAP8-1Q8IUC2 63 aa9.27□□□□□ -0.93
LSM4-201ENST00000252816 KRTAP4-8A0A0G2JLE6 195 aa9.23□□□□□ -0.93
LSM4-201ENST00000252816 KRTAP10-7P60409 375 aaPredicted RBP9.23□□□□□ -0.93
LSM4-201ENST00000252816 KRTAP4-8Q9BYQ9 185 aa9.23□□□□□ -0.93
LSM4-201ENST00000252816 CYSTM1Q9H1C7 97 aa9.23□□□□□ -0.93
LSM4-201ENST00000252816 H7BZZ5 65 aa9.19□□□□□ -0.94
LSM4-201ENST00000252816 KRTAP20-1Q3LI63 56 aa9.18□□□□□ -0.94
LSM4-201ENST00000252816 KRTAP10-12P60413 245 aa9.16□□□□□ -0.94
LSM4-201ENST00000252816 SPRR2EP22531 72 aa9.13□□□□□ -0.95
LSM4-201ENST00000252816 SPRR2BP35325 72 aa9.13□□□□□ -0.95
LSM4-201ENST00000252816 SPRR2AP35326 72 aa9.13□□□□□ -0.95
LSM4-201ENST00000252816 SEC61GP60059 68 aa9.05□□□□□ -0.96
LSM4-201ENST00000252816 LCE1AQ5T7P2 110 aa9.05□□□□□ -0.96
LSM4-201ENST00000252816 SERP1Q9Y6X1 66 aa9.05□□□□□ -0.96
LSM4-201ENST00000252816 ANAPC13Q9BS18 74 aa9.01□□□□□ -0.97
LSM4-201ENST00000252816 CAMK2N1Q7Z7J9 78 aa8.99□□□□□ -0.97
LSM4-201ENST00000252816 A0A0D9SG42 100 aa8.96□□□□□ -0.98
LSM4-201ENST00000252816 KRTAP2-3P0C7H8 128 aa8.96□□□□□ -0.98
LSM4-201ENST00000252816 SPATA8Q6RVD6 105 aa8.96□□□□□ -0.98
LSM4-201ENST00000252816 KRTAP2-4Q9BYR9 128 aa8.96□□□□□ -0.98
LSM4-201ENST00000252816 A0A1B0GU33 70 aa8.94□□□□□ -0.98
LSM4-201ENST00000252816 CCDC179H3BU77 68 aa8.88□□□□□ -0.99
LSM4-201ENST00000252816 SPRR2DP22532 72 aa8.82□□□□□ -1
LSM4-201ENST00000252816 SPINT4Q6UDR6 99 aa8.81□□□□□ -1
LSM4-201ENST00000252816 A0A1B0GU69 56 aa8.8□□□□□ -1
LSM4-201ENST00000252816 KRTAP12-1P59990 96 aa8.8□□□□□ -1
LSM4-201ENST00000252816 KRTAP2-2Q9BYT5 123 aa8.69□□□□□ -1.02
LSM4-201ENST00000252816 KRTAP2-1Q9BYU5 128 aa8.69□□□□□ -1.02
LSM4-201ENST00000252816 ATP5EP56381 51 aaPredicted RBP8.68□□□□□ -1.02
LSM4-201ENST00000252816 SMIM26A0A096LP01 95 aa8.66□□□□□ -1.02
LSM4-201ENST00000252816 A8MU10 97 aa8.66□□□□□ -1.02
LSM4-201ENST00000252816 KRTAP19-7Q3SYF9 63 aa8.64□□□□□ -1.03
LSM4-201ENST00000252816 LCE3BQ5TA77 95 aa8.58□□□□□ -1.04
LSM4-201ENST00000252816 MT1EP04732 61 aa8.55□□□□□ -1.04
LSM4-201ENST00000252816 PRR15LQ9BU68 103 aa8.53□□□□□ -1.04
LSM4-201ENST00000252816 LINC01558Q9Y6Z2 57 aa8.52□□□□□ -1.05
LSM4-201ENST00000252816 TMEM258P61165 79 aa8.49□□□□□ -1.05
LSM4-201ENST00000252816 LCE5AQ5TCM9 118 aa8.47□□□□□ -1.05
LSM4-201ENST00000252816 KRTAP19-3Q7Z4W3 81 aa8.45□□□□□ -1.06
LSM4-201ENST00000252816 KRTAP19-5Q3LI72 72 aa8.44□□□□□ -1.06
LSM4-201ENST00000252816 C10orf95Q9H7T3 257 aa8.42□□□□□ -1.06
LSM4-201ENST00000252816 TNP1P09430 55 aa8.31□□□□□ -1.08
LSM4-201ENST00000252816 LCE3AQ5TA76 89 aa8.29□□□□□ -1.08
LSM4-201ENST00000252816 UQCR11O14957 56 aa8.27□□□□□ -1.09
LSM4-201ENST00000252816 MT1GP13640 62 aa8.25□□□□□ -1.09
LSM4-201ENST00000252816 DSTQ03001 7570 aaKnown RBP8.2□□□□□ -1.1
LSM4-201ENST00000252816 MT1LQ93083 61 aa8.19□□□□□ -1.1
LSM4-201ENST00000252816 PP632Q6XCG6 107 aa8.14□□□□□ -1.11
LSM4-201ENST00000252816 MT1MQ8N339 61 aa8.13□□□□□ -1.11
LSM4-201ENST00000252816 MIR22HGQ0VDD5 57 aa8.11□□□□□ -1.11
LSM4-201ENST00000252816 PSPHP1O15172 72 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms