RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 MYCBP2O75592 4640 aa9.65□□□□□ -0.86
PTPN12-201ENST00000248594 KRTAP15-1Q3LI76 137 aa9.63□□□□□ -0.87
PTPN12-201ENST00000248594 S4R3F8 94 aa9.52□□□□□ -0.89
PTPN12-201ENST00000248594 KRTAP10-6P60371 365 aaPredicted RBP9.5□□□□□ -0.89
PTPN12-201ENST00000248594 KRTAP12-2P59991 146 aa9.47□□□□□ -0.89
PTPN12-201ENST00000248594 SACSQ9NZJ4 4579 aa9.47□□□□□ -0.89
PTPN12-201ENST00000248594 PKD1P98161 4303 aa9.41□□□□□ -0.9
PTPN12-201ENST00000248594 LRP1Q07954 4544 aaKnown RBP9.4□□□□□ -0.9
PTPN12-201ENST00000248594 DYNC1H1Q14204 4646 aaKnown RBP9.39□□□□□ -0.91
PTPN12-201ENST00000248594 KMT2CQ8NEZ4 4911 aaKnown RBP9.35□□□□□ -0.91
PTPN12-201ENST00000248594 KRTAP3-2Q9BYR7 98 aa9.33□□□□□ -0.92
PTPN12-201ENST00000248594 RYR2Q92736 4967 aa9.3□□□□□ -0.92
PTPN12-201ENST00000248594 FAT3Q8TDW7 4589 aa9.3□□□□□ -0.92
PTPN12-201ENST00000248594 KRTAP3-3Q9BYR6 98 aa9.3□□□□□ -0.92
PTPN12-201ENST00000248594 KRTAP12-1P59990 96 aa9.23□□□□□ -0.93
PTPN12-201ENST00000248594 KRTAP10-8P60410 259 aa9.22□□□□□ -0.93
PTPN12-201ENST00000248594 HSPG2P98160 4391 aa9.17□□□□□ -0.94
PTPN12-201ENST00000248594 RYR3Q15413 4870 aa9.17□□□□□ -0.94
PTPN12-201ENST00000248594 APOBP04114 4563 aaKnown RBP9.16□□□□□ -0.94
PTPN12-201ENST00000248594 A0A1B0GVY2 172 aa9.14□□□□□ -0.95
PTPN12-201ENST00000248594 PLAC4Q8WY50 150 aa9.12□□□□□ -0.95
PTPN12-201ENST00000248594 SEC61BP60468 96 aaKnown RBP9.11□□□□□ -0.95
PTPN12-201ENST00000248594 XP32Q5T750 250 aa9.1□□□□□ -0.95
PTPN12-201ENST00000248594 LPAP08519 4548 aa9.09□□□□□ -0.95
PTPN12-201ENST00000248594 RPS29P62273 56 aaKnown RBP9.09□□□□□ -0.95
PTPN12-201ENST00000248594 M0QZ58 72 aa9.01□□□□□ -0.97
PTPN12-201ENST00000248594 PKHD1L1Q86WI1 4243 aa8.95□□□□□ -0.98
PTPN12-201ENST00000248594 LRP2P98164 4655 aa8.94□□□□□ -0.98
PTPN12-201ENST00000248594 R4GN34 69 aa8.9□□□□□ -0.99
PTPN12-201ENST00000248594 KIAA1109Q2LD37 5005 aa8.89□□□□□ -0.99
PTPN12-201ENST00000248594 RYR1P21817 5038 aa8.86□□□□□ -0.99
PTPN12-201ENST00000248594 EPPK1P58107 5090 aaKnown RBP8.83□□□□□ -1
PTPN12-201ENST00000248594 KRTAP10-4P60372 401 aaPredicted RBP8.81□□□□□ -1
PTPN12-201ENST00000248594 Q5VSD8 79 aa8.79□□□□□ -1
PTPN12-201ENST00000248594 CAMK2N1Q7Z7J9 78 aa8.68□□□□□ -1.02
PTPN12-201ENST00000248594 KRTAP17-1Q9BYP8 105 aa8.67□□□□□ -1.02
PTPN12-201ENST00000248594 TNXBP22105 4242 aa8.63□□□□□ -1.03
PTPN12-201ENST00000248594 ABCA13Q86UQ4 5058 aa8.62□□□□□ -1.03
PTPN12-201ENST00000248594 MUC2Q02817 5179 aa8.62□□□□□ -1.03
PTPN12-201ENST00000248594 LORP23490 312 aaPredicted RBP8.58□□□□□ -1.04
PTPN12-201ENST00000248594 BIRC6Q9NR09 4857 aa8.5□□□□□ -1.05
PTPN12-201ENST00000248594 J3QL48 77 aa8.46□□□□□ -1.06
PTPN12-201ENST00000248594 KRTAP4-5Q9BYR2 181 aa8.45□□□□□ -1.06
PTPN12-201ENST00000248594 HERC2O95714 4834 aa8.37□□□□□ -1.07
PTPN12-201ENST00000248594 PP632Q6XCG6 107 aa8.33□□□□□ -1.08
PTPN12-201ENST00000248594 MT1HL1P0DM35 61 aa8.32□□□□□ -1.08
PTPN12-201ENST00000248594 TNP1P09430 55 aa8.16□□□□□ -1.1
PTPN12-201ENST00000248594 PRO2289Q9P1D8 64 aa8.16□□□□□ -1.1
PTPN12-201ENST00000248594 FAT4Q6V0I7 4981 aa8.15□□□□□ -1.11
PTPN12-201ENST00000248594 PCLOQ9Y6V0 5065 aa8.1□□□□□ -1.11
PTPN12-201ENST00000248594 KRTAP4-1Q9BYQ7 146 aa8.09□□□□□ -1.11
PTPN12-201ENST00000248594 RNF213Q63HN8 5207 aa7.96□□□□□ -1.14
PTPN12-201ENST00000248594 HERC1Q15751 4861 aa7.92□□□□□ -1.14
PTPN12-201ENST00000248594 MUC17Q685J3 4493 aa7.88□□□□□ -1.15
PTPN12-201ENST00000248594 SPRR5A0A1B0GTR4 108 aa7.82□□□□□ -1.16
PTPN12-201ENST00000248594 HMCN2Q8NDA2 5059 aa7.73□□□□□ -1.17
PTPN12-201ENST00000248594 INE1O15225 51 aa7.69□□□□□ -1.18
PTPN12-201ENST00000248594 M0R2T5 61 aa7.68□□□□□ -1.18
PTPN12-201ENST00000248594 LCE3AQ5TA76 89 aa7.67□□□□□ -1.18
PTPN12-201ENST00000248594 UBR4Q5T4S7 5183 aa7.59□□□□□ -1.19
PTPN12-201ENST00000248594 KRTAP23-1A1A580 65 aa7.49□□□□□ -1.21
PTPN12-201ENST00000248594 KRTAP19-2Q3LHN2 52 aa7.48□□□□□ -1.21
PTPN12-201ENST00000248594 FLGP20930 4061 aaPredicted RBP7.47□□□□□ -1.21
PTPN12-201ENST00000248594 USH2AO75445 5202 aa7.32□□□□□ -1.24
PTPN12-201ENST00000248594 KRTAP10-10P60014 251 aa7.31□□□□□ -1.24
PTPN12-201ENST00000248594 KMT2DO14686 5537 aa7.28□□□□□ -1.24
PTPN12-201ENST00000248594 KRTAP12-3P60328 96 aa7.21□□□□□ -1.25
PTPN12-201ENST00000248594 KRTAP19-1Q8IUB9 90 aa7.16□□□□□ -1.26
PTPN12-201ENST00000248594 LCE2CQ5TA81 110 aa7.14□□□□□ -1.27
PTPN12-201ENST00000248594 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
PTPN12-201ENST00000248594 MT1FP04733 61 aa7.08□□□□□ -1.28
PTPN12-201ENST00000248594 FSIP2Q5CZC0 6907 aa7.07□□□□□ -1.28
PTPN12-201ENST00000248594 KRTAP10-12P60413 245 aa7.05□□□□□ -1.28
PTPN12-201ENST00000248594 SPRR2GQ9BYE4 73 aa7.05□□□□□ -1.28
PTPN12-201ENST00000248594 MT1HP80294 61 aa7.01□□□□□ -1.29
PTPN12-201ENST00000248594 MT2AP02795 61 aa6.97□□□□□ -1.29
PTPN12-201ENST00000248594 KRTAP10-7P60409 375 aaPredicted RBP6.89□□□□□ -1.31
PTPN12-201ENST00000248594 KRTAP10-5P60370 271 aa6.83□□□□□ -1.32
PTPN12-201ENST00000248594 MT1XP80297 61 aa6.81□□□□□ -1.32
PTPN12-201ENST00000248594 LCE2AQ5TA79 106 aaPredicted RBP6.8□□□□□ -1.32
PTPN12-201ENST00000248594 KRTAP9-8Q9BYQ0 159 aa6.78□□□□□ -1.32
PTPN12-201ENST00000248594 MT1BP07438 61 aa6.73□□□□□ -1.33
PTPN12-201ENST00000248594 KRTAP19-5Q3LI72 72 aa6.72□□□□□ -1.33
PTPN12-201ENST00000248594 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
PTPN12-201ENST00000248594 KRTAP4-8A0A0G2JLE6 195 aa6.63□□□□□ -1.35
PTPN12-201ENST00000248594 KRTAP4-8Q9BYQ9 185 aa6.63□□□□□ -1.35
PTPN12-201ENST00000248594 DSTQ03001 7570 aaKnown RBP6.63□□□□□ -1.35
PTPN12-201ENST00000248594 KRTAP9-6A8MVA2 160 aa6.62□□□□□ -1.35
PTPN12-201ENST00000248594 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
PTPN12-201ENST00000248594 OBSCNQ5VST9 7968 aa6.58□□□□□ -1.36
PTPN12-201ENST00000248594 KRTAP19-8Q3LI54 63 aa6.54□□□□□ -1.36
PTPN12-201ENST00000248594 KRTAP9-3Q9BYQ3 159 aa6.49□□□□□ -1.37
PTPN12-201ENST00000248594 FCGBPQ9Y6R7 5405 aaPredicted RBP6.45□□□□□ -1.38
PTPN12-201ENST00000248594 SYNE1Q8NF91 8797 aaKnown RBP6.39□□□□□ -1.39
PTPN12-201ENST00000248594 LCE2BO14633 110 aa6.37□□□□□ -1.39
PTPN12-201ENST00000248594 CRCT1Q9UGL9 99 aa6.32□□□□□ -1.4
PTPN12-201ENST00000248594 KRTAP2-3P0C7H8 128 aa6.32□□□□□ -1.4
PTPN12-201ENST00000248594 KRTAP2-4Q9BYR9 128 aa6.32□□□□□ -1.4
PTPN12-201ENST00000248594 KRTAP2-1Q9BYU5 128 aa6.32□□□□□ -1.4
PTPN12-201ENST00000248594 MUC12Q9UKN1 5478 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms